Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07955

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,803,451	+				+0.9
1,803,598	+				-0.3
1,803,599	-				+1.0
1,803,599	-				-1.8
1,803,604	+				+0.2
1,803,604	+				+0.6
1,803,604	+				-0.3
1,803,605	-				+0.2
1,803,629	-				+1.0
1,803,629	-				-0.6
1,803,691	+				-0.6
1,803,691	+				-0.7
1,803,691	+				+0.7
1,803,691	+				-0.1
1,803,691	+				+1.2
1,803,691	+				+0.4
1,803,692	-				-0.3
1,803,692	-				-3.0
1,803,692	-				+1.7
1,803,692	-				-1.3
1,803,692	-				-0.2
1,803,704	+				-2.1
1,803,704	+				+4.1
1,803,705	-				-1.1
1,803,705	-				+0.5
1,803,759	+				-1.0
1,803,760	-				-0.3
1,803,760	-				+0.3
1,803,761	+				+1.0
1,803,761	+				-0.7
1,803,762	-				-1.5
1,803,762	-				+2.4
1,803,773	+				+0.3
1,803,773	+				+1.2
1,803,845	+		DDA3937_RS07950	0.14	+2.5
1,803,846	-		DDA3937_RS07950	0.14	+0.4
1,803,953	+		DDA3937_RS07950	0.29	+1.1
1,803,953	+		DDA3937_RS07950	0.29	+0.5
1,803,953	+		DDA3937_RS07950	0.29	-0.3
1,803,954	-		DDA3937_RS07950	0.29	-1.1
1,803,954	-		DDA3937_RS07950	0.29	+0.7
1,804,029	+		DDA3937_RS07950	0.40	-1.8
1,804,029	+		DDA3937_RS07950	0.40	+1.7
1,804,030	-		DDA3937_RS07950	0.40	+1.4
1,804,042	+		DDA3937_RS07950	0.42	-0.6
1,804,042	+		DDA3937_RS07950	0.42	+0.6
1,804,042	+		DDA3937_RS07950	0.42	-0.3
1,804,042	+		DDA3937_RS07950	0.42	-1.0
1,804,042	+		DDA3937_RS07950	0.42	+1.2
1,804,042	+		DDA3937_RS07950	0.42	-0.6
1,804,042	+		DDA3937_RS07950	0.42	+0.4
1,804,042	+		DDA3937_RS07950	0.42	-1.8
1,804,043	-		DDA3937_RS07950	0.42	+0.0
1,804,043	-		DDA3937_RS07950	0.42	-1.8
1,804,043	-		DDA3937_RS07950	0.42	-0.4
1,804,153	-		DDA3937_RS07950	0.57	-2.0
1,804,170	+		DDA3937_RS07950	0.59	+0.2
1,804,170	+		DDA3937_RS07950	0.59	-1.3
1,804,170	+		DDA3937_RS07950	0.59	+0.2
1,804,171	-		DDA3937_RS07950	0.60	+0.4
1,804,171	-		DDA3937_RS07950	0.60	+0.3
1,804,171	-		DDA3937_RS07950	0.60	+0.2
1,804,173	+		DDA3937_RS07950	0.60	+0.7
1,804,173	+				-0.3
1,804,173	+		DDA3937_RS07950	0.60	-0.4
1,804,174	-		DDA3937_RS07950	0.60	-1.6
1,804,174	-		DDA3937_RS07950	0.60	-1.6
1,804,174	-		DDA3937_RS07950	0.60	+0.5
1,804,191	-		DDA3937_RS07950	0.62	+0.7
1,804,221	+		DDA3937_RS07950	0.67	-1.1
1,804,221	+		DDA3937_RS07950	0.67	-0.8
1,804,221	+		DDA3937_RS07950	0.67	+0.3
1,804,221	+		DDA3937_RS07950	0.67	-0.3
1,804,222	-		DDA3937_RS07950	0.67	+0.3
1,804,222	-		DDA3937_RS07950	0.67	-0.7
1,804,222	-		DDA3937_RS07950	0.67	-0.5
1,804,222	-		DDA3937_RS07950	0.67	-0.4
1,804,371	+				+0.7
1,804,395	+				-0.1
1,804,396	-				+0.7
1,804,458	+				+0.3
1,804,459	-				-1.1
1,804,577	+		DDA3937_RS07955	0.14	-0.9
1,804,916	+		DDA3937_RS07955	0.50	-1.0
1,805,153	-		DDA3937_RS07955	0.75	-0.1
1,805,153	-		DDA3937_RS07955	0.75	+0.0
1,805,226	+		DDA3937_RS07955	0.83	+1.3
1,805,227	-		DDA3937_RS07955	0.83	-1.4
1,805,254	+		DDA3937_RS07955	0.86	-0.7
1,805,254	+		DDA3937_RS07955	0.86	+0.7
1,805,356	-				+1.7
1,805,365	+				-0.8
1,805,365	+				-0.3
1,805,391	+				+0.4
1,805,392	-				-0.7
1,805,435	+				-1.3
1,805,435	+				-0.6
1,805,463	-				-0.3
1,805,469	+				-1.0
1,805,493	+				-1.7
1,805,493	+				+0.3
1,805,493	+				-1.4
1,805,493	+				-0.5
1,805,493	+				+0.0
1,805,493	+				+0.5
1,805,493	+				+1.6
1,805,493	+				+0.3
1,805,493	+				-0.9
1,805,493	+				+0.3
1,805,493	+				+1.1
1,805,493	+				+1.7
1,805,493	+				+1.5
1,805,493	+				-0.4
1,805,493	+				-0.8
1,805,493	+				+0.9
1,805,493	+				-1.6
1,805,493	+				+0.9
1,805,493	+				-0.9
1,805,493	+				+0.2
1,805,493	+				+1.7
1,805,494	-				-1.6
1,805,494	-				+1.7
1,805,494	-				-0.8
1,805,494	-				+0.4
1,805,494	-				-2.1
1,805,494	-				-0.1
1,805,494	-				+0.4
1,805,494	-				-2.4
1,805,494	-				-0.5
1,805,494	-				+0.6
1,805,494	-				-0.9
1,805,494	-				-0.6
1,805,494	-				-0.6
1,805,494	-				-0.6
1,805,494	-				-1.0
1,805,494	-				-0.6
1,805,495	+				-0.6
1,805,495	+				-0.7
1,805,495	+				-0.3
1,805,495	+				+1.3
1,805,496	-				-0.7
1,805,496	-				-2.1
1,805,496	-				-0.9
1,805,496	-				-0.8
1,805,496	-				+0.2
1,805,496	-				+0.1
1,805,496	-				-0.9
1,805,496	-				+0.8
1,805,496	-				-2.0
1,805,496	-				-1.1
1,805,567	+				+0.1
1,805,568	+				+1.2
1,805,568	+				+4.3
1,805,568	+				-0.8
1,805,569	-				-2.2
1,805,569	-				+0.6
1,805,569	-				+2.3
1,805,569	-				+0.2
1,805,614	-				-0.3
1,805,687	-		DDA3937_RS07960	0.16	-2.0
1,805,687	-		DDA3937_RS07960	0.16	-1.9
1,805,687	-		DDA3937_RS07960	0.16	-0.0
1,805,687	-		DDA3937_RS07960	0.16	-1.8
1,805,913	+		DDA3937_RS07960	0.46	-0.5
1,805,953	+		DDA3937_RS07960	0.51	-0.7
1,805,953	+		DDA3937_RS07960	0.51	-1.1
1,805,953	+		DDA3937_RS07960	0.51	-1.2
1,805,954	-		DDA3937_RS07960	0.51	-0.4
1,805,991	+		DDA3937_RS07960	0.56	-0.7
1,806,169	+				+1.3
1,806,170	-		DDA3937_RS07960	0.79	-0.3
1,806,189	+		DDA3937_RS07960	0.82	+0.2
1,806,189	+		DDA3937_RS07960	0.82	-1.0
1,806,189	+		DDA3937_RS07960	0.82	-2.7
1,806,189	+		DDA3937_RS07960	0.82	-1.1
1,806,189	+		DDA3937_RS07960	0.82	+0.4
1,806,189	+		DDA3937_RS07960	0.82	-0.1
1,806,189	+		DDA3937_RS07960	0.82	-0.5
1,806,190	-		DDA3937_RS07960	0.82	-1.8
1,806,190	-		DDA3937_RS07960	0.82	+0.7
1,806,190	-		DDA3937_RS07960	0.82	-1.1
1,806,190	-		DDA3937_RS07960	0.82	-1.7
1,806,190	-		DDA3937_RS07960	0.82	-1.3
1,806,190	-		DDA3937_RS07960	0.82	-0.3
1,806,190	-		DDA3937_RS07960	0.82	-0.2
1,806,192	+		DDA3937_RS07960	0.82	+0.4
1,806,192	+		DDA3937_RS07960	0.82	-0.6
1,806,334	+				-0.6
1,806,334	+				-0.6
1,806,334	+				+0.4
1,806,335	-				-1.1
1,806,335	-				-0.6
1,806,346	+				-0.6
1,806,347	-				+0.2