Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07875

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,781,201	-		DDA3937_RS07870	0.16	+0.4
1,781,251	+		DDA3937_RS07870	0.21	-1.7
1,781,251	+		DDA3937_RS07870	0.21	-0.3
1,781,252	-		DDA3937_RS07870	0.21	-1.0
1,781,252	-		DDA3937_RS07870	0.21	+0.3
1,781,252	-		DDA3937_RS07870	0.21	-0.7
1,781,254	+		DDA3937_RS07870	0.21	+0.2
1,781,254	+		DDA3937_RS07870	0.21	+1.1
1,781,254	+		DDA3937_RS07870	0.21	-1.4
1,781,255	-		DDA3937_RS07870	0.21	+4.2
1,781,255	-		DDA3937_RS07870	0.21	-1.6
1,781,255	-		DDA3937_RS07870	0.21	-0.6
1,781,255	-		DDA3937_RS07870	0.21	-0.6
1,781,433	-		DDA3937_RS07870	0.38	-2.0
1,781,433	-		DDA3937_RS07870	0.38	+0.8
1,781,493	-				+0.7
1,781,685	+		DDA3937_RS07870	0.63	+0.0
1,781,686	-		DDA3937_RS07870	0.63	-1.2
1,781,773	+		DDA3937_RS07870	0.71	+0.0
1,781,852	+		DDA3937_RS07870	0.79	-1.4
1,782,163	+				-0.8
1,782,163	+				-0.3
1,782,163	+				+0.7
1,782,164	-				+0.7
1,782,269	+				-1.1
1,782,269	+				-0.6
1,782,270	-				+0.5
1,782,545	+		DDA3937_RS07875	0.16	-1.3
1,782,923	-		DDA3937_RS07875	0.34	-1.0
1,782,923	-		DDA3937_RS07875	0.34	+0.2
1,782,979	+		DDA3937_RS07875	0.37	-0.8
1,783,092	+		DDA3937_RS07875	0.42	-2.3
1,783,093	-		DDA3937_RS07875	0.42	-0.8
1,783,108	+		DDA3937_RS07875	0.43	+0.4
1,783,109	-		DDA3937_RS07875	0.43	-0.7
1,783,109	-		DDA3937_RS07875	0.43	-0.5
1,783,109	-		DDA3937_RS07875	0.43	+0.0
1,783,109	-		DDA3937_RS07875	0.43	-1.7
1,783,113	+		DDA3937_RS07875	0.43	-1.1
1,783,113	+		DDA3937_RS07875	0.43	-0.4
1,783,113	+		DDA3937_RS07875	0.43	+0.4
1,783,113	+		DDA3937_RS07875	0.43	+0.2
1,783,114	-		DDA3937_RS07875	0.43	-0.8
1,783,129	+		DDA3937_RS07875	0.44	+0.2
1,783,130	-		DDA3937_RS07875	0.44	-1.8
1,783,130	-		DDA3937_RS07875	0.44	-2.1
1,783,130	-		DDA3937_RS07875	0.44	-0.3
1,783,180	-		DDA3937_RS07875	0.46	+1.0
1,783,180	-		DDA3937_RS07875	0.46	-1.5
1,783,180	-		DDA3937_RS07875	0.46	-2.7
1,783,240	+		DDA3937_RS07875	0.49	+0.9
1,783,241	-		DDA3937_RS07875	0.49	-1.0
1,783,241	-		DDA3937_RS07875	0.49	-0.1
1,783,241	-		DDA3937_RS07875	0.49	+0.1
1,783,241	-		DDA3937_RS07875	0.49	-1.3
1,783,259	-		DDA3937_RS07875	0.50	-0.3
1,783,284	-		DDA3937_RS07875	0.51	-0.2
1,783,284	-		DDA3937_RS07875	0.51	+0.7
1,783,325	+		DDA3937_RS07875	0.53	-1.7
1,783,360	+		DDA3937_RS07875	0.55	-1.3
1,783,426	+		DDA3937_RS07875	0.58	-1.7
1,783,426	+		DDA3937_RS07875	0.58	-1.0
1,783,427	-				-0.3
1,783,463	-		DDA3937_RS07875	0.59	-0.3
1,783,466	+		DDA3937_RS07875	0.60	-2.2
1,783,467	-		DDA3937_RS07875	0.60	-0.5
1,783,467	-		DDA3937_RS07875	0.60	-0.4
1,783,510	+		DDA3937_RS07875	0.62	-0.4
1,783,510	+		DDA3937_RS07875	0.62	-0.4
1,783,511	-		DDA3937_RS07875	0.62	-0.7
1,783,511	-		DDA3937_RS07875	0.62	+0.0
1,783,511	-		DDA3937_RS07875	0.62	+0.1
1,783,594	+		DDA3937_RS07875	0.66	+0.6
1,783,675	+		DDA3937_RS07875	0.69	-1.0
1,783,676	-		DDA3937_RS07875	0.69	-0.6
1,783,676	-		DDA3937_RS07875	0.69	-0.8
1,783,762	+		DDA3937_RS07875	0.74	-0.8
1,783,762	+				+0.2
1,783,763	-		DDA3937_RS07875	0.74	+0.0
1,783,763	-		DDA3937_RS07875	0.74	+1.1
1,783,763	-		DDA3937_RS07875	0.74	+0.6
1,783,836	+		DDA3937_RS07875	0.77	-1.3
1,783,837	-		DDA3937_RS07875	0.77	+0.5
1,783,837	-		DDA3937_RS07875	0.77	-0.0
1,783,873	-		DDA3937_RS07875	0.79	-1.3
1,783,933	+		DDA3937_RS07875	0.82	+1.7
1,783,933	+		DDA3937_RS07875	0.82	+0.2
1,783,933	+		DDA3937_RS07875	0.82	-0.8
1,783,933	+		DDA3937_RS07875	0.82	-2.5
1,783,934	-		DDA3937_RS07875	0.82	-0.8
1,783,934	-		DDA3937_RS07875	0.82	-0.7
1,784,236	+				-1.7
1,784,237	-				-0.3
1,784,237	-				+2.1
1,784,313	-				-0.5
1,784,323	+				-1.1
1,784,323	+				+1.2
1,784,324	-				-0.6
1,784,324	-				+0.3
1,784,324	-				+0.7
1,784,324	-				+0.6
1,784,326	+				-1.3
1,784,326	+				+0.2
1,784,327	-				+2.2
1,784,327	-				-0.8
1,784,373	-				+0.2
1,784,375	+				+0.7
1,784,375	+				-0.7
1,784,375	+				-1.7
1,784,375	+				-0.7
1,784,375	+				-0.3
1,784,376	-				-1.3
1,784,376	-				-0.7
1,784,376	-				-2.7
1,784,376	-				-2.0
1,784,376	-				+0.2
1,784,376	-				-0.3
1,784,379	-				-1.8
1,784,379	-				-0.3
1,784,408	+				+0.7
1,784,408	+				-0.1
1,784,408	+				-0.8
1,784,408	+				+0.4
1,784,408	+				-1.3
1,784,408	+				-0.3
1,784,411	+				-1.3
1,784,412	-				-0.6
1,784,412	-				-0.6
1,784,412	-				-0.1
1,784,412	-				-0.6
1,784,421	+				+1.2
1,784,463	+				+0.3
1,784,561	+		DDA3937_RS07880	0.14	-0.6
1,784,562	-		DDA3937_RS07880	0.14	-0.4
1,784,685	+		DDA3937_RS07880	0.24	+0.3
1,784,685	+		DDA3937_RS07880	0.24	+0.4
1,784,686	-		DDA3937_RS07880	0.24	+0.4
1,784,686	-		DDA3937_RS07880	0.24	+0.3
1,784,745	+				-1.1
1,784,745	+		DDA3937_RS07880	0.29	+0.3
1,784,745	+				+1.7
1,784,745	+		DDA3937_RS07880	0.29	-1.0
1,784,746	-		DDA3937_RS07880	0.29	-0.5
1,784,746	-		DDA3937_RS07880	0.29	+0.0
1,784,746	-		DDA3937_RS07880	0.29	-0.4
1,784,746	-		DDA3937_RS07880	0.29	-0.1
1,784,746	-		DDA3937_RS07880	0.29	-2.3
1,784,747	+				-0.3
1,784,790	+		DDA3937_RS07880	0.32	+0.0
1,784,791	-		DDA3937_RS07880	0.32	-0.9
1,784,791	-		DDA3937_RS07880	0.32	+0.5
1,784,791	-		DDA3937_RS07880	0.32	-0.1
1,784,791	-		DDA3937_RS07880	0.32	-1.4
1,784,793	-		DDA3937_RS07880	0.32	-0.2
1,784,827	-		DDA3937_RS07880	0.35	+0.3
1,785,090	+		DDA3937_RS07880	0.56	-1.3
1,785,090	+		DDA3937_RS07880	0.56	-0.6
1,785,090	+		DDA3937_RS07880	0.56	-0.7
1,785,090	+		DDA3937_RS07880	0.56	-2.2
1,785,090	+		DDA3937_RS07880	0.56	-1.2
1,785,090	+		DDA3937_RS07880	0.56	+0.6
1,785,090	+		DDA3937_RS07880	0.56	-1.5
1,785,091	-		DDA3937_RS07880	0.56	-0.1
1,785,091	-		DDA3937_RS07880	0.56	-0.7
1,785,091	-		DDA3937_RS07880	0.56	-1.1
1,785,091	-		DDA3937_RS07880	0.56	-0.3
1,785,091	-		DDA3937_RS07880	0.56	-0.3
1,785,114	+		DDA3937_RS07880	0.57	-0.7
1,785,115	-		DDA3937_RS07880	0.57	-0.1
1,785,115	-		DDA3937_RS07880	0.57	+0.5
1,785,115	-		DDA3937_RS07880	0.57	-2.4
1,785,257	+		DDA3937_RS07880	0.69	-2.4
1,785,283	+		DDA3937_RS07880	0.71	-0.8