Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS07825 and DDA3937_RS07830 are separated by 32 nucleotides DDA3937_RS07830 and DDA3937_RS07835 overlap by 1 nucleotides DDA3937_RS07835 and DDA3937_RS07840 are separated by 85 nucleotides
DDA3937_RS07825: DDA3937_RS07825 - [citrate (pro-3S)-lyase] ligase, at 1,767,497 to 1,768,540
_RS07825
DDA3937_RS07830: DDA3937_RS07830 - citrate lyase acyl carrier protein, at 1,768,573 to 1,768,863
_RS07830
DDA3937_RS07835: DDA3937_RS07835 - citrate (pro-3S)-lyase subunit beta, at 1,768,863 to 1,769,753
_RS07835
DDA3937_RS07840: DDA3937_RS07840 - citrate lyase subunit alpha, at 1,769,839 to 1,771,368
_RS07840
Position (kb) 1768
1769 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1767.676 kb on + strand, within DDA3937_RS07825 at 1767.676 kb on + strand, within DDA3937_RS07825 at 1767.992 kb on + strand, within DDA3937_RS07825 at 1768.317 kb on - strand, within DDA3937_RS07825 at 1768.317 kb on - strand, within DDA3937_RS07825 at 1768.317 kb on - strand, within DDA3937_RS07825 at 1769.350 kb on - strand, within DDA3937_RS07835 at 1769.398 kb on - strand, within DDA3937_RS07835
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,767,676 + DDA3937_RS07825 0.17 +0.3 1,767,676 + DDA3937_RS07825 0.17 -0.5 1,767,992 + DDA3937_RS07825 0.47 -0.4 1,768,317 - DDA3937_RS07825 0.79 +4.6 1,768,317 - DDA3937_RS07825 0.79 -1.4 1,768,317 - DDA3937_RS07825 0.79 -0.4 1,769,350 - DDA3937_RS07835 0.55 -0.6 1,769,398 - DDA3937_RS07835 0.60 -0.8
Or see this region's nucleotide sequence