Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07590

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,712,803	+		DDA3937_RS07580	0.56	-1.8
1,712,809	+		DDA3937_RS07580	0.57	-0.5
1,712,844	-		DDA3937_RS07580	0.63	-1.9
1,712,933	-		DDA3937_RS07580	0.80	-0.4
1,712,933	-		DDA3937_RS07580	0.80	-1.0
1,712,972	-		DDA3937_RS07580	0.87	-0.8
1,712,972	-		DDA3937_RS07580	0.87	-1.1
1,712,975	+		DDA3937_RS07580	0.87	-0.5
1,712,976	-		DDA3937_RS07580	0.87	-0.5
1,712,976	-				+1.8
1,712,978	+		DDA3937_RS07580	0.88	+0.8
1,712,978	+		DDA3937_RS07580	0.88	-1.1
1,712,979	-		DDA3937_RS07580	0.88	-0.8
1,713,024	-				+0.1
1,713,024	-				-1.0
1,713,027	-				-0.4
1,713,036	+				-1.2
1,713,037	-				-1.5
1,713,037	-				+1.2
1,713,064	-				-0.3
1,713,064	-				+0.5
1,713,095	+				-0.7
1,713,120	+				+0.9
1,713,120	+				+0.5
1,713,121	-				-1.7
1,713,123	-				-1.3
1,713,144	-				-1.0
1,713,161	+				-1.4
1,713,162	-				+0.5
1,713,221	+				-0.5
1,713,228	+				-0.9
1,713,229	-				+0.9
1,713,270	+				+0.9
1,713,270	+				+0.1
1,713,270	+				+0.2
1,713,271	-				-1.4
1,713,271	-				+0.0
1,713,314	-				-0.0
1,713,376	-				-1.4
1,713,376	-				-0.8
1,713,376	-				-2.0
1,713,376	-				-1.4
1,713,376	-				-3.3
1,713,778	-				-0.4
1,713,778	-				+0.5
1,713,782	+				+0.8
1,713,782	+				+0.8
1,713,782	+				-2.2
1,713,783	-				-0.6
1,713,783	-				+0.8
1,713,842	+				+0.4
1,713,842	+				-1.1
1,713,842	+				+0.5
1,713,843	-				+0.8
1,713,843	-				-0.7
1,713,843	-				+2.0
1,713,885	-		DDA3937_RS07590	0.15	-0.7
1,713,885	-		DDA3937_RS07590	0.15	+0.2
1,713,906	+		DDA3937_RS07590	0.19	-0.2
1,713,907	-		DDA3937_RS07590	0.19	-1.2
1,713,908	+		DDA3937_RS07590	0.19	-2.3
1,713,908	+		DDA3937_RS07590	0.19	-0.3
1,713,909	-		DDA3937_RS07590	0.19	+0.4
1,713,938	+		DDA3937_RS07590	0.24	-0.9
1,713,938	+		DDA3937_RS07590	0.24	-0.5
1,713,939	-		DDA3937_RS07590	0.25	+0.2
1,713,939	-		DDA3937_RS07590	0.25	-0.9
1,713,939	-		DDA3937_RS07590	0.25	-0.1
1,713,939	-				+1.8
1,713,960	+		DDA3937_RS07590	0.28	-1.7
1,713,960	+		DDA3937_RS07590	0.28	-1.1
1,713,961	-		DDA3937_RS07590	0.28	-0.5
1,713,961	-		DDA3937_RS07590	0.28	-0.0
1,713,961	-		DDA3937_RS07590	0.28	-1.9
1,714,008	+		DDA3937_RS07590	0.37	-1.5
1,714,008	+		DDA3937_RS07590	0.37	-1.7
1,714,008	+		DDA3937_RS07590	0.37	-1.2
1,714,008	+		DDA3937_RS07590	0.37	-1.5
1,714,009	-		DDA3937_RS07590	0.37	-1.7
1,714,009	-		DDA3937_RS07590	0.37	+1.0
1,714,063	+		DDA3937_RS07590	0.46	-0.0
1,714,063	+		DDA3937_RS07590	0.46	-1.7
1,714,064	-		DDA3937_RS07590	0.47	-0.3
1,714,123	+		DDA3937_RS07590	0.57	-1.0
1,714,123	+		DDA3937_RS07590	0.57	+0.4
1,714,123	+		DDA3937_RS07590	0.57	-0.2
1,714,123	+		DDA3937_RS07590	0.57	-1.0
1,714,124	-		DDA3937_RS07590	0.57	-0.9
1,714,124	-		DDA3937_RS07590	0.57	-0.1
1,714,133	+		DDA3937_RS07590	0.59	+1.8
1,714,133	+		DDA3937_RS07590	0.59	+1.0
1,714,133	+		DDA3937_RS07590	0.59	-0.5
1,714,134	-		DDA3937_RS07590	0.59	-1.5
1,714,171	+		DDA3937_RS07590	0.65	-0.5
1,714,260	-		DDA3937_RS07590	0.81	-1.7
1,714,260	-		DDA3937_RS07590	0.81	+0.5
1,714,281	-		DDA3937_RS07590	0.85	-1.0
1,714,281	-		DDA3937_RS07590	0.85	-0.3
1,714,281	-		DDA3937_RS07590	0.85	-0.5
1,714,323	-				+1.0
1,714,323	-				+3.6
1,714,323	-				+0.2
1,714,345	+				-0.4
1,714,345	+				-0.5
1,714,346	-				+0.2
1,714,376	+				-0.6
1,714,376	+				-0.5
1,714,377	-				+0.1
1,714,377	-				+0.2
1,714,377	-				+0.2
1,714,377	-				+0.5
1,714,381	-				-0.1
1,714,381	-				-1.5
1,714,381	-				+0.2
1,714,381	-				-0.7
1,714,383	+				-0.4
1,714,384	-				+1.0
1,714,384	-				-1.0
1,714,384	-				+0.8
1,714,384	-				-0.2
1,714,405	+				-0.5
1,714,405	+				-1.9
1,714,406	-				-0.0
1,714,406	-				+1.3
1,714,406	-				+0.8
1,714,434	-				-0.3
1,714,434	-				+0.1
1,714,441	+				-1.3
1,714,441	+				+0.4
1,714,442	-				-0.4
1,714,442	-				+0.5
1,714,450	-				+1.3
1,714,484	-				+0.3
1,714,487	+				-0.2
1,714,487	+				-0.2
1,714,492	+				+0.2
1,714,492	+				+0.2
1,714,492	+				+0.8
1,714,493	-				+0.5
1,714,493	-				-0.8
1,714,493	-				-0.0
1,714,493	-				+0.7
1,714,504	-				-1.7
1,714,504	-				-2.0
1,714,504	-				-1.6
1,714,549	-				-1.0
1,714,569	+				+0.5
1,714,570	-				-0.4
1,714,588	+				-1.5
1,714,588	+				-0.2
1,714,594	+				-1.0
1,714,594	+				-1.4
1,714,594	+				-1.4
1,714,594	+				+0.1
1,714,594	+				+0.8
1,714,595	-				-1.8
1,714,595	-				-1.4
1,714,595	-				-0.4
1,714,595	-				-0.5
1,714,595	-				-0.2
1,714,595	-				+0.1
1,714,595	-				-0.8
1,714,595	-				-0.3
1,714,595	-				+1.1
1,714,595	-				-0.3
1,714,595	-				+0.8
1,714,595	-				+0.9
1,714,621	+				+0.2
1,714,622	-				-0.4
1,714,622	-				-1.0
1,714,625	+				-0.1
1,714,625	+				-1.7
1,714,625	+				-0.9
1,714,625	+				-0.3
1,714,625	+				-2.1
1,714,625	+				+1.4
1,714,626	-				+0.8
1,714,626	-				-0.5
1,714,626	-				+2.1
1,714,626	-				-0.4
1,714,626	-				-0.8
1,714,628	+				-0.5
1,714,715	+				+0.6
1,714,715	+				-0.1
1,714,716	-				-0.1
1,714,716	-				+0.0
1,714,716	-				-0.8
1,714,716	-				-1.0
1,714,716	-				+0.2
1,714,746	-				-1.0
1,714,857	+				-0.2
1,714,857	+				-0.7
1,714,857	+				-0.3
1,714,857	+				+1.9
1,714,857	+				-0.6
1,714,857	+				-0.0
1,714,857	+				+0.5
1,714,858	-				+2.1
1,714,858	-				-0.0
1,714,858	-				+0.1
1,714,858	-				-3.0
1,714,858	-				+0.3
1,714,858	-				-1.5
1,714,858	-				-0.4
1,714,861	+				-0.2
1,714,861	+				-1.1
1,714,861	+				-0.7
1,714,861	+				-0.3
1,714,861	+				-0.9
1,714,861	+				-1.0
1,714,861	+				-1.0
1,714,861	+				-0.5
1,714,862	-				-1.4
1,714,862	-				+0.8
1,714,862	-				-1.4
1,714,862	-				+0.2
1,714,862	-				+1.8
1,714,862	-				-0.3
1,714,862	-				-0.1
1,714,871	-				+0.5
1,714,880	+				+0.9
1,714,880	+				-1.7
1,714,940	+		DDA3937_RS07595	0.13	-0.8
1,714,940	+		DDA3937_RS07595	0.13	-2.3
1,714,940	+		DDA3937_RS07595	0.13	-1.3
1,714,941	-		DDA3937_RS07595	0.13	+0.1
1,714,973	+		DDA3937_RS07595	0.17	-0.2
1,715,035	-		DDA3937_RS07595	0.26	-1.7
1,715,035	-		DDA3937_RS07595	0.26	-0.8
1,715,035	-		DDA3937_RS07595	0.26	-0.7
1,715,078	+		DDA3937_RS07595	0.32	-0.0
1,715,078	+		DDA3937_RS07595	0.32	+0.1
1,715,078	+		DDA3937_RS07595	0.32	+0.1
1,715,078	+		DDA3937_RS07595	0.32	-0.2
1,715,079	-		DDA3937_RS07595	0.32	-1.9
1,715,079	-		DDA3937_RS07595	0.32	-2.5
1,715,079	-		DDA3937_RS07595	0.32	-0.5
1,715,079	-		DDA3937_RS07595	0.32	+0.0
1,715,079	-		DDA3937_RS07595	0.32	-1.1
1,715,227	-		DDA3937_RS07595	0.53	+0.3
1,715,227	-		DDA3937_RS07595	0.53	-0.7
1,715,227	-		DDA3937_RS07595	0.53	-0.2
1,715,227	-		DDA3937_RS07595	0.53	-1.6
1,715,285	+		DDA3937_RS07595	0.61	-0.7
1,715,285	+		DDA3937_RS07595	0.61	-0.5
1,715,365	-		DDA3937_RS07595	0.72	+0.2
1,715,365	-		DDA3937_RS07595	0.72	-1.7