Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06460 and DDA3937_RS06465 are separated by 17 nucleotides DDA3937_RS06465 and DDA3937_RS06470 are separated by 138 nucleotides
DDA3937_RS06460: DDA3937_RS06460 - 2-oxoglutarate dehydrogenase E1 component, at 1,442,155 to 1,444,962
_RS06460
DDA3937_RS06465: DDA3937_RS06465 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 1,444,980 to 1,446,206
_RS06465
DDA3937_RS06470: DDA3937_RS06470 - ADP-forming succinate--CoA ligase subunit beta, at 1,446,345 to 1,447,511
_RS06470
Position (kb)
1444
1445
1446
1447 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1444.900 kb on + strand at 1444.960 kb on + strand at 1444.968 kb on + strand at 1446.204 kb on + strand at 1446.249 kb on + strand at 1446.252 kb on + strand at 1446.252 kb on + strand at 1446.252 kb on + strand at 1446.252 kb on + strand at 1446.252 kb on + strand at 1446.259 kb on + strand at 1446.259 kb on + strand at 1446.259 kb on + strand at 1446.260 kb on - strand at 1446.260 kb on - strand at 1446.594 kb on + strand, within DDA3937_RS06470 at 1447.132 kb on + strand, within DDA3937_RS06470
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,444,900 + +0.3 1,444,960 + -0.4 1,444,968 + -0.1 1,446,204 + -0.4 1,446,249 + -0.6 1,446,252 + +0.2 1,446,252 + +0.0 1,446,252 + -1.2 1,446,252 + -0.4 1,446,252 + -0.4 1,446,259 + -0.4 1,446,259 + -0.4 1,446,259 + +0.2 1,446,260 - +0.2 1,446,260 - +0.4 1,446,594 + DDA3937_RS06470 0.21 +2.9 1,447,132 + DDA3937_RS06470 0.67 -0.2
Or see this region's nucleotide sequence