Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05970

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,341,934	+		DDA3937_RS05960	0.46	+0.3
1,341,934	+		DDA3937_RS05960	0.46	-1.1
1,342,152	+		DDA3937_RS05960	0.80	-1.0
1,342,153	-		DDA3937_RS05960	0.80	+0.9
1,342,183	+		DDA3937_RS05960	0.85	-0.5
1,342,284	+				+0.9
1,342,285	-				+0.1
1,342,285	-				-0.7
1,342,285	-				+0.1
1,342,287	+				-0.4
1,342,517	+		DDA3937_RS05965	0.39	-0.8
1,342,517	+		DDA3937_RS05965	0.39	-0.2
1,342,517	+		DDA3937_RS05965	0.39	-0.2
1,342,517	+		DDA3937_RS05965	0.39	-0.1
1,342,539	+		DDA3937_RS05965	0.42	-0.1
1,342,540	-		DDA3937_RS05965	0.42	-0.7
1,342,551	+		DDA3937_RS05965	0.44	-2.0
1,342,732	-		DDA3937_RS05965	0.70	-0.2
1,343,257	-		DDA3937_RS05970	0.13	-0.9
1,343,376	-		DDA3937_RS05970	0.18	-0.9
1,343,405	-		DDA3937_RS05970	0.19	-0.2
1,343,520	+		DDA3937_RS05970	0.24	-1.6
1,343,520	+		DDA3937_RS05970	0.24	-1.9
1,343,521	-		DDA3937_RS05970	0.24	-0.7
1,343,521	-		DDA3937_RS05970	0.24	-1.0
1,343,521	-		DDA3937_RS05970	0.24	+0.3
1,343,522	+		DDA3937_RS05970	0.24	-0.4
1,343,522	+		DDA3937_RS05970	0.24	+0.9
1,343,522	+		DDA3937_RS05970	0.24	-0.8
1,343,523	-		DDA3937_RS05970	0.24	-1.9
1,343,523	-		DDA3937_RS05970	0.24	+0.2
1,343,523	-		DDA3937_RS05970	0.24	-0.6
1,343,523	-				-0.1
1,343,523	-		DDA3937_RS05970	0.24	+0.3
1,343,523	-		DDA3937_RS05970	0.24	-1.8
1,343,601	+		DDA3937_RS05970	0.27	-0.4
1,343,601	+		DDA3937_RS05970	0.27	+0.9
1,343,602	-		DDA3937_RS05970	0.28	-0.2
1,343,728	-		DDA3937_RS05970	0.33	-3.0
1,343,742	+		DDA3937_RS05970	0.33	-0.5
1,343,884	+		DDA3937_RS05970	0.39	+0.1
1,344,072	+		DDA3937_RS05970	0.47	+0.9
1,344,073	-		DDA3937_RS05970	0.47	-1.3
1,344,075	+		DDA3937_RS05970	0.47	+1.7
1,344,075	+		DDA3937_RS05970	0.47	-0.4
1,344,075	+		DDA3937_RS05970	0.47	-2.2
1,344,075	+		DDA3937_RS05970	0.47	-0.6
1,344,076	-		DDA3937_RS05970	0.47	+0.1
1,344,076	-		DDA3937_RS05970	0.47	-2.4
1,344,076	-		DDA3937_RS05970	0.47	-1.8
1,344,076	-		DDA3937_RS05970	0.47	+0.5
1,344,101	-		DDA3937_RS05970	0.48	-1.4
1,344,119	-		DDA3937_RS05970	0.49	+0.1
1,344,162	-		DDA3937_RS05970	0.51	-1.9
1,344,405	+		DDA3937_RS05970	0.61	-0.9
1,344,419	+		DDA3937_RS05970	0.61	-0.7
1,344,624	-		DDA3937_RS05970	0.70	+0.9
1,344,624	-		DDA3937_RS05970	0.70	-0.4
1,344,667	+		DDA3937_RS05970	0.71	-0.2
1,344,667	+		DDA3937_RS05970	0.71	-1.3
1,344,668	-		DDA3937_RS05970	0.71	-0.2
1,344,674	-		DDA3937_RS05970	0.72	-0.7
1,344,738	-		DDA3937_RS05970	0.74	+0.9
1,344,836	+		DDA3937_RS05970	0.78	-1.0
1,344,837	-				+0.9
1,345,299	+				-0.4
1,345,381	+				-1.4
1,345,382	-				-1.6
1,345,422	+				-0.9
1,345,423	-				+0.3
1,345,426	-				-2.7
1,345,482	+				-1.0
1,345,482	+				-0.4
1,345,483	-				+0.3
1,345,483	-		DDA3937_RS05975	0.10	-0.8
1,345,483	-		DDA3937_RS05975	0.10	-1.0
1,345,498	+				+2.5
1,345,498	+		DDA3937_RS05975	0.13	-0.3
1,345,498	+		DDA3937_RS05975	0.13	+0.3
1,345,499	-		DDA3937_RS05975	0.13	+1.1
1,345,584	+		DDA3937_RS05975	0.27	-1.7
1,345,584	+		DDA3937_RS05975	0.27	-1.4
1,345,584	+		DDA3937_RS05975	0.27	-0.1
1,345,584	+		DDA3937_RS05975	0.27	-1.5
1,345,585	-		DDA3937_RS05975	0.28	-1.5
1,345,585	-		DDA3937_RS05975	0.28	-1.9
1,345,585	-		DDA3937_RS05975	0.28	-0.4
1,345,585	-		DDA3937_RS05975	0.28	+1.2
1,345,585	-		DDA3937_RS05975	0.28	-0.9
1,345,585	-		DDA3937_RS05975	0.28	+0.7
1,345,626	+		DDA3937_RS05975	0.35	-1.1
1,345,627	-		DDA3937_RS05975	0.35	+1.9
1,345,635	+		DDA3937_RS05975	0.36	-1.9
1,345,635	+		DDA3937_RS05975	0.36	-1.3
1,345,635	+		DDA3937_RS05975	0.36	-0.6
1,345,635	+		DDA3937_RS05975	0.36	-0.4
1,345,692	+		DDA3937_RS05975	0.46	+0.1
1,345,723	+		DDA3937_RS05975	0.51	+0.3
1,345,723	+		DDA3937_RS05975	0.51	-0.5
1,345,724	-		DDA3937_RS05975	0.52	-0.1
1,345,772	+		DDA3937_RS05975	0.60	-0.5
1,345,772	+		DDA3937_RS05975	0.60	-0.4
1,345,773	-		DDA3937_RS05975	0.60	-0.3
1,345,773	-		DDA3937_RS05975	0.60	-0.9
1,345,773	-		DDA3937_RS05975	0.60	-0.9
1,345,807	+		DDA3937_RS05975	0.66	-1.2
1,345,834	+		DDA3937_RS05975	0.70	-0.1
1,345,835	-		DDA3937_RS05975	0.71	-0.5
1,345,835	-		DDA3937_RS05975	0.71	-1.0
1,345,835	-		DDA3937_RS05975	0.71	+0.6
1,345,835	-		DDA3937_RS05975	0.71	+0.3
1,345,845	+		DDA3937_RS05975	0.72	-1.2
1,345,846	-		DDA3937_RS05975	0.73	-2.8
1,345,846	-		DDA3937_RS05975	0.73	+0.9
1,345,875	+		DDA3937_RS05975	0.77	-0.6
1,345,875	+		DDA3937_RS05975	0.77	+0.3
1,345,875	+		DDA3937_RS05975	0.77	-1.1
1,345,875	+		DDA3937_RS05975	0.77	+0.1
1,345,876	-		DDA3937_RS05975	0.78	-1.3
1,346,005	+				-0.6
1,346,006	-				-0.1
1,346,006	-				-1.7
1,346,006	-				+0.8
1,346,010	+				+0.3
1,346,011	-				-0.6
1,346,011	-				-0.9
1,346,026	+				-0.7
1,346,029	+				-0.0
1,346,029	+				-0.7
1,346,029	+				+0.4
1,346,029	+				+0.3
1,346,029	+				-1.4
1,346,030	-				+0.0
1,346,183	-				-1.2
1,346,183	-				+0.0
1,346,236	+				-1.4
1,346,236	+				-0.9
1,346,236	+				+1.3
1,346,236	+				-0.3
1,346,236	+				+0.3
1,346,237	-				-1.4
1,346,237	-				-0.0
1,346,237	-				+0.2
1,346,237	-				-0.2
1,346,260	+				-0.6
1,346,260	+				+1.4
1,346,261	-				+1.6
1,346,261	-				+1.2
1,346,263	+				+1.5
1,346,263	+				+0.3
1,346,264	-				-1.3
1,346,312	-				-1.0
1,346,312	-				-0.3
1,346,312	-				-0.7
1,346,325	+				-0.9
1,346,330	+				-1.1
1,346,331	-				+0.6
1,346,332	+				-0.7
1,346,333	-				-1.1
1,346,333	-				+2.3
1,346,339	+				+0.2
1,346,359	+				-0.4