Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05565

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,241,861	-				+0.4
1,241,861	-				+0.1
1,241,861	-				+0.0
1,241,861	-				+1.2
1,241,865	+				-0.6
1,241,866	-				-0.2
1,241,866	-				+3.7
1,241,866	-				+1.0
1,241,866	-				-1.2
1,241,870	+				-1.0
1,241,870	+				-0.1
1,241,870	+				+0.0
1,241,870	+				-0.7
1,241,870	+				-1.1
1,241,870	+				-1.3
1,241,871	-				+0.4
1,241,871	-				-0.8
1,241,933	+				-0.7
1,241,966	+				+0.7
1,241,966	+				-1.6
1,241,966	+				-1.3
1,241,967	-				+2.0
1,241,967	-				+0.4
1,241,967	-				+0.8
1,241,967	-				+0.8
1,241,986	-				-0.6
1,242,084	+		DDA3937_RS05560	0.20	-0.2
1,242,085	-		DDA3937_RS05560	0.20	-0.2
1,242,085	-		DDA3937_RS05560	0.20	-1.9
1,242,253	-		DDA3937_RS05560	0.54	-1.0
1,242,518	+				+0.4
1,242,520	+				-1.2
1,242,520	+				-1.0
1,242,582	+				-0.4
1,242,617	+				-1.3
1,242,672	+				-0.8
1,242,673	-				-1.1
1,242,673	-				+0.0
1,242,673	-				-0.9
1,242,686	+				-1.7
1,242,686	+				-0.6
1,242,687	-				-0.2
1,242,687	-				-0.3
1,242,701	-				-0.7
1,242,738	-				+0.2
1,242,752	-				+1.4
1,242,752	-				-0.6
1,242,773	+				+1.0
1,242,773	+				-0.5
1,242,773	+				-0.1
1,242,774	-				-2.1
1,242,774	-				+0.4
1,242,774	-				-1.3
1,242,854	+				+3.3
1,242,893	+				-0.8
1,242,893	+				+1.0
1,242,893	+				+0.3
1,242,893	+				+0.4
1,242,893	+				+0.3
1,242,894	-				+0.7
1,242,900	-				+1.2
1,242,923	+				+1.0
1,242,923	+				+0.0
1,242,923	+				-0.6
1,242,923	+				-1.2
1,242,924	-				-1.3
1,242,964	+		DDA3937_RS05565	0.11	+0.2
1,242,964	+		DDA3937_RS05565	0.11	-1.9
1,242,965	-		DDA3937_RS05565	0.11	+0.4
1,243,013	+		DDA3937_RS05565	0.15	-0.2
1,243,013	+		DDA3937_RS05565	0.15	+0.0
1,243,013	+		DDA3937_RS05565	0.15	-0.2
1,243,013	+		DDA3937_RS05565	0.15	+0.2
1,243,014	-		DDA3937_RS05565	0.15	-0.5
1,243,014	-		DDA3937_RS05565	0.15	-0.7
1,243,018	+		DDA3937_RS05565	0.15	+0.4
1,243,019	-		DDA3937_RS05565	0.15	+0.5
1,243,055	+		DDA3937_RS05565	0.18	-1.8
1,243,098	-		DDA3937_RS05565	0.22	+0.1
1,243,136	-		DDA3937_RS05565	0.25	+0.0
1,243,168	-		DDA3937_RS05565	0.28	-0.3
1,243,168	-		DDA3937_RS05565	0.28	-2.0
1,243,175	+		DDA3937_RS05565	0.28	+1.3
1,243,188	+		DDA3937_RS05565	0.29	+1.0
1,243,251	+		DDA3937_RS05565	0.35	+1.1
1,243,251	+		DDA3937_RS05565	0.35	+0.3
1,243,251	+		DDA3937_RS05565	0.35	-0.2
1,243,251	+				+1.0
1,243,251	+		DDA3937_RS05565	0.35	+1.0
1,243,251	+		DDA3937_RS05565	0.35	-1.0
1,243,252	-		DDA3937_RS05565	0.35	-1.3
1,243,252	-		DDA3937_RS05565	0.35	+0.8
1,243,252	-		DDA3937_RS05565	0.35	-1.0
1,243,252	-		DDA3937_RS05565	0.35	-0.6
1,243,265	+		DDA3937_RS05565	0.36	-0.5
1,243,265	+		DDA3937_RS05565	0.36	-0.4
1,243,282	+		DDA3937_RS05565	0.37	-1.2
1,243,282	+		DDA3937_RS05565	0.37	+0.4
1,243,282	+		DDA3937_RS05565	0.37	-1.5
1,243,283	-		DDA3937_RS05565	0.37	-0.8
1,243,344	+		DDA3937_RS05565	0.42	+0.0
1,243,344	+		DDA3937_RS05565	0.42	-1.8
1,243,345	-		DDA3937_RS05565	0.42	-2.1
1,243,350	+		DDA3937_RS05565	0.43	-1.8
1,243,350	+		DDA3937_RS05565	0.43	-1.6
1,243,351	-		DDA3937_RS05565	0.43	-0.2
1,243,424	+		DDA3937_RS05565	0.49	+0.9
1,243,424	+		DDA3937_RS05565	0.49	-1.1
1,243,431	+		DDA3937_RS05565	0.50	-0.6
1,243,431	+		DDA3937_RS05565	0.50	-0.7
1,243,431	+		DDA3937_RS05565	0.50	-0.6
1,243,431	+		DDA3937_RS05565	0.50	-1.1
1,243,431	+		DDA3937_RS05565	0.50	-1.7
1,243,431	+		DDA3937_RS05565	0.50	-0.6
1,243,431	+		DDA3937_RS05565	0.50	-1.2
1,243,431	+		DDA3937_RS05565	0.50	-1.5
1,243,432	-		DDA3937_RS05565	0.50	-0.4
1,243,432	-		DDA3937_RS05565	0.50	-1.1
1,243,432	-		DDA3937_RS05565	0.50	-0.3
1,243,432	-		DDA3937_RS05565	0.50	-0.4
1,243,432	-		DDA3937_RS05565	0.50	+0.4
1,243,490	+		DDA3937_RS05565	0.55	+0.4
1,243,491	-		DDA3937_RS05565	0.55	-1.4
1,243,529	+		DDA3937_RS05565	0.58	+0.0
1,243,529	+		DDA3937_RS05565	0.58	-0.8
1,243,666	+		DDA3937_RS05565	0.69	-1.3
1,243,666	+		DDA3937_RS05565	0.69	-0.2
1,243,667	-		DDA3937_RS05565	0.69	+0.1
1,243,667	-		DDA3937_RS05565	0.69	-1.5
1,243,679	+		DDA3937_RS05565	0.70	-0.7
1,243,696	+		DDA3937_RS05565	0.72	-0.9
1,243,850	+		DDA3937_RS05565	0.84	+0.4
1,243,851	-		DDA3937_RS05565	0.85	-1.0
1,243,952	+				-1.1
1,243,952	+				+2.9
1,243,952	+				-1.0
1,243,953	-				+1.4
1,243,953	-				+0.4
1,243,953	-				-0.2
1,244,132	+				-2.0
1,244,133	-				-0.8
1,244,133	-				+0.6
1,244,207	+		DDA3937_RS05570	0.13	-1.5
1,244,266	+		DDA3937_RS05570	0.25	-0.8
1,244,267	-		DDA3937_RS05570	0.25	-0.4
1,244,267	-		DDA3937_RS05570	0.25	-1.9
1,244,304	+		DDA3937_RS05570	0.33	-1.7
1,244,345	+		DDA3937_RS05570	0.41	-0.9
1,244,345	+		DDA3937_RS05570	0.41	-1.8
1,244,345	+		DDA3937_RS05570	0.41	-0.1
1,244,346	-		DDA3937_RS05570	0.41	+0.4
1,244,346	-		DDA3937_RS05570	0.41	-0.6
1,244,346	-		DDA3937_RS05570	0.41	-3.1
1,244,346	-		DDA3937_RS05570	0.41	-0.5
1,244,346	-		DDA3937_RS05570	0.41	-0.8
1,244,349	+		DDA3937_RS05570	0.42	-0.9
1,244,350	-		DDA3937_RS05570	0.42	-1.1
1,244,350	-		DDA3937_RS05570	0.42	+2.0
1,244,350	-		DDA3937_RS05570	0.42	-0.0
1,244,549	+		DDA3937_RS05570	0.81	-0.1
1,244,550	-		DDA3937_RS05570	0.82	-2.5
1,244,596	+				-0.7
1,244,597	-				-1.2
1,244,597	-				+0.7
1,244,597	-				-1.9
1,244,597	-				-1.6
1,244,624	+				+2.0
1,244,624	+				+1.4
1,244,679	+				+3.0
1,244,680	-				+0.1
1,244,739	+				-0.8
1,244,740	-				+0.2
1,244,740	-				-1.1
1,244,800	+				-0.2
1,244,843	-		DDA3937_RS05575	0.12	+0.3