Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05010

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,121,348	+		DDA3937_RS04995	0.71	-1.0
1,121,398	-		DDA3937_RS04995	0.75	+0.2
1,121,487	+		DDA3937_RS04995	0.82	-2.1
1,121,487	+		DDA3937_RS04995	0.82	-1.7
1,121,487	+		DDA3937_RS04995	0.82	+1.3
1,121,488	-		DDA3937_RS04995	0.82	+0.0
1,121,566	+		DDA3937_RS04995	0.89	+0.1
1,121,597	-				-0.7
1,121,684	+				+0.1
1,121,684	+				-0.7
1,121,685	-				-2.4
1,121,706	-				-1.4
1,121,721	+				-0.4
1,121,772	-				+0.4
1,121,772	-				-0.8
1,121,842	+		DDA3937_RS05000	0.71	-1.3
1,121,872	-				-1.3
1,121,872	-				-0.9
1,121,872	-				-0.3
1,121,883	+				+0.4
1,121,884	-				+0.4
1,121,895	-				+0.7
1,122,035	+				-0.8
1,122,040	+				+0.5
1,122,041	-				+0.1
1,122,099	+				-0.1
1,122,099	+				-0.2
1,122,099	+				-1.5
1,122,099	+				-0.8
1,122,100	-				-0.9
1,122,100	-				-0.9
1,122,100	-				+2.0
1,122,124	+				+0.4
1,122,162	+				-1.7
1,122,162	+				+2.6
1,122,162	+				+3.6
1,122,168	+				+0.4
1,122,168	+				+0.3
1,122,168	+				-1.1
1,122,168	+				-0.8
1,122,169	-				+3.6
1,122,169	-				-0.6
1,122,211	+				-0.4
1,122,211	+				+1.0
1,122,212	-				-2.1
1,122,212	-				-0.9
1,122,240	-				+0.0
1,122,283	+				-0.1
1,122,283	+				+3.3
1,122,283	+				-0.8
1,122,284	-				-1.9
1,122,285	+				-1.6
1,122,285	+				-0.8
1,122,285	+				-0.4
1,122,286	-				+1.0
1,122,286	-				-0.2
1,122,286	-				+0.7
1,122,286	-				-1.0
1,122,286	-				-0.3
1,122,354	+		DDA3937_RS05010	0.14	-0.4
1,122,354	+		DDA3937_RS05010	0.14	+0.4
1,122,354	+		DDA3937_RS05010	0.14	+2.0
1,122,354	+		DDA3937_RS05010	0.14	+0.4
1,122,355	-		DDA3937_RS05010	0.14	-0.8
1,122,355	-		DDA3937_RS05010	0.14	-1.0
1,122,355	-		DDA3937_RS05010	0.14	+0.7
1,122,410	-		DDA3937_RS05010	0.19	+0.4
1,122,445	-		DDA3937_RS05010	0.22	-0.3
1,122,522	+		DDA3937_RS05010	0.29	-1.8
1,122,523	-		DDA3937_RS05010	0.29	-1.3
1,122,543	+		DDA3937_RS05010	0.31	-0.6
1,122,553	+		DDA3937_RS05010	0.31	-0.2
1,122,553	+		DDA3937_RS05010	0.31	-1.0
1,122,553	+		DDA3937_RS05010	0.31	+0.4
1,122,553	+		DDA3937_RS05010	0.31	-0.8
1,122,553	+		DDA3937_RS05010	0.31	-0.1
1,122,553	+		DDA3937_RS05010	0.31	-1.4
1,122,553	+		DDA3937_RS05010	0.31	-1.8
1,122,553	+		DDA3937_RS05010	0.31	-0.3
1,122,553	+		DDA3937_RS05010	0.31	-0.9
1,122,554	-		DDA3937_RS05010	0.32	-0.7
1,122,554	-		DDA3937_RS05010	0.32	-2.0
1,122,554	-		DDA3937_RS05010	0.32	-1.7
1,122,554	-		DDA3937_RS05010	0.32	-0.1
1,122,610	+		DDA3937_RS05010	0.36	-1.6
1,122,610	+		DDA3937_RS05010	0.36	-2.6
1,122,610	+		DDA3937_RS05010	0.36	+0.2
1,122,611	-		DDA3937_RS05010	0.36	-1.0
1,122,611	-		DDA3937_RS05010	0.36	-0.9
1,122,611	-		DDA3937_RS05010	0.36	-1.5
1,122,611	-		DDA3937_RS05010	0.36	-3.0
1,122,611	-		DDA3937_RS05010	0.36	+0.0
1,122,611	-		DDA3937_RS05010	0.36	+0.3
1,122,664	+		DDA3937_RS05010	0.41	-0.6
1,122,664	+		DDA3937_RS05010	0.41	-0.3
1,122,665	-		DDA3937_RS05010	0.41	-1.3
1,122,665	-		DDA3937_RS05010	0.41	+1.0
1,122,665	-		DDA3937_RS05010	0.41	-2.6
1,122,665	-		DDA3937_RS05010	0.41	-0.2
1,122,720	+		DDA3937_RS05010	0.46	+0.0
1,122,720	+		DDA3937_RS05010	0.46	-0.3
1,122,726	+		DDA3937_RS05010	0.46	-2.0
1,122,726	+		DDA3937_RS05010	0.46	-1.4
1,122,726	+		DDA3937_RS05010	0.46	+0.0
1,122,726	+		DDA3937_RS05010	0.46	+0.0
1,122,727	-		DDA3937_RS05010	0.46	-0.7
1,122,727	-		DDA3937_RS05010	0.46	-0.8
1,122,751	+		DDA3937_RS05010	0.49	-0.9
1,122,751	+		DDA3937_RS05010	0.49	-0.3
1,122,751	+		DDA3937_RS05010	0.49	-1.7
1,122,752	-		DDA3937_RS05010	0.49	-1.7
1,122,752	-		DDA3937_RS05010	0.49	-1.6
1,122,794	-		DDA3937_RS05010	0.52	+0.8
1,122,818	-		DDA3937_RS05010	0.54	-0.6
1,122,932	+		DDA3937_RS05010	0.64	-2.0
1,122,932	+		DDA3937_RS05010	0.64	-1.1
1,122,932	+		DDA3937_RS05010	0.64	-0.3
1,122,963	+		DDA3937_RS05010	0.67	-0.2
1,123,062	+		DDA3937_RS05010	0.75	-4.4
1,123,062	+		DDA3937_RS05010	0.75	+0.4
1,123,063	-		DDA3937_RS05010	0.76	-0.8
1,123,063	-		DDA3937_RS05010	0.76	-1.0
1,123,130	+		DDA3937_RS05010	0.81	+0.8
1,123,161	+		DDA3937_RS05010	0.84	+1.3
1,123,183	+				+2.0
1,123,184	-		DDA3937_RS05010	0.86	+0.8
1,123,184	-		DDA3937_RS05010	0.86	-0.7
1,123,184	-		DDA3937_RS05010	0.86	-1.7
1,123,184	-		DDA3937_RS05010	0.86	-1.0
1,123,225	+		DDA3937_RS05010	0.90	+1.3
1,123,225	+		DDA3937_RS05010	0.90	-1.2
1,123,226	-		DDA3937_RS05010	0.90	-0.6
1,123,251	-				+0.3
1,123,278	+				-0.7
1,123,278	+				-0.5
1,123,278	+				-0.6
1,123,279	-				+1.8
1,123,342	+				-0.0
1,123,343	-				-0.7
1,123,366	+				-0.7
1,123,366	+				+0.5
1,123,366	+				-1.7
1,123,366	+				-1.1
1,123,366	+				-1.8
1,123,366	+				+1.0
1,123,366	+				-0.5
1,123,366	+				-2.0
1,123,366	+				+0.4
1,123,366	+				-1.2
1,123,366	+				-1.4
1,123,366	+				+0.2
1,123,367	-				+1.0
1,123,367	-				+1.7
1,123,367	-				-0.9
1,123,367	-				-1.1
1,123,368	+				+1.2
1,123,368	+				-0.5
1,123,368	+				-1.8
1,123,368	+				-0.7
1,123,368	+				-0.3
1,123,368	+				-0.3
1,123,369	-				-1.6
1,123,441	+		DDA3937_RS05015	0.11	+0.3
1,123,441	+		DDA3937_RS05015	0.11	-0.8
1,123,441	+		DDA3937_RS05015	0.11	+1.4
1,123,442	-		DDA3937_RS05015	0.12	-1.5
1,123,442	-		DDA3937_RS05015	0.12	-1.8
1,123,444	+		DDA3937_RS05015	0.12	+0.8
1,123,444	+		DDA3937_RS05015	0.12	-0.1
1,123,444	+		DDA3937_RS05015	0.12	+0.5
1,123,444	+		DDA3937_RS05015	0.12	-1.9
1,123,445	-		DDA3937_RS05015	0.12	+0.4
1,123,445	-		DDA3937_RS05015	0.12	+1.4
1,123,579	-		DDA3937_RS05015	0.40	-0.7
1,123,579	-		DDA3937_RS05015	0.40	+0.7
1,123,656	+		DDA3937_RS05015	0.56	-2.0
1,123,657	-		DDA3937_RS05015	0.56	-0.8
1,123,760	+		DDA3937_RS05015	0.78	-2.6
1,123,760	+		DDA3937_RS05015	0.78	+0.2
1,123,761	-		DDA3937_RS05015	0.78	+3.5
1,123,762	+		DDA3937_RS05015	0.78	-0.8
1,123,762	+		DDA3937_RS05015	0.78	-0.1
1,123,762	+		DDA3937_RS05015	0.78	+0.9
1,123,762	+		DDA3937_RS05015	0.78	-0.2
1,123,763	-		DDA3937_RS05015	0.79	+1.4
1,123,763	-		DDA3937_RS05015	0.79	+1.0
1,123,911	-				-0.7
1,123,983	+		DDA3937_RS05020	0.12	+2.2
1,123,983	+		DDA3937_RS05020	0.12	-0.5
1,123,983	+		DDA3937_RS05020	0.12	-0.3
1,123,984	-		DDA3937_RS05020	0.12	-1.6
1,123,984	-		DDA3937_RS05020	0.12	+0.4
1,123,992	+		DDA3937_RS05020	0.13	-1.1
1,123,993	-		DDA3937_RS05020	0.13	-0.6
1,124,010	+		DDA3937_RS05020	0.14	+0.0
1,124,011	-		DDA3937_RS05020	0.14	-1.3
1,124,011	-		DDA3937_RS05020	0.14	+0.5
1,124,011	-		DDA3937_RS05020	0.14	-1.5
1,124,017	+		DDA3937_RS05020	0.15	-0.2
1,124,265	-		DDA3937_RS05020	0.39	+2.0