Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04920

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,100,969	+				+0.3
1,101,031	+				+0.1
1,101,031	+				-0.3
1,101,032	-				+0.0
1,101,039	+				+2.0
1,101,039	+				+0.7
1,101,133	+				-1.6
1,101,138	-				-0.5
1,101,209	-				-0.5
1,101,235	+				+0.0
1,101,241	+				-2.4
1,101,242	-				-0.6
1,101,382	+				-0.3
1,101,382	+				-0.1
1,101,388	+				+3.4
1,101,420	+				-0.2
1,101,446	+				-0.5
1,101,453	-				-0.1
1,101,453	-				-1.8
1,101,464	+				-0.6
1,101,464	+				-1.6
1,101,471	-				-1.8
1,101,568	+				-0.3
1,101,618	-				-0.4
1,101,618	-				-0.2
1,101,788	+				-0.7
1,101,932	+				-1.5
1,101,932	+				+2.0
1,101,933	-				-0.2
1,101,999	+				-0.6
1,102,037	-				-0.2
1,102,098	+				-0.8
1,102,099	-				-0.9
1,102,099	-				-1.0
1,102,101	+				-0.3
1,102,102	-				+3.8
1,102,102	-				+1.5
1,102,102	-				+0.2
1,102,102	-				+1.5
1,102,148	+				-1.3
1,102,148	+				-0.7
1,102,148	+				+2.0
1,102,149	-				-0.2
1,102,150	+				-2.5
1,102,150	+				-1.6
1,102,150	+				-0.6
1,102,151	-				+2.5
1,102,151	-				+0.7
1,102,151	-				-0.0
1,102,151	-				-0.6
1,102,238	-				+0.2
1,102,400	+		DDA3937_RS04920	0.15	-0.2
1,102,401	-		DDA3937_RS04920	0.15	-0.6
1,102,401	-		DDA3937_RS04920	0.15	+0.0
1,102,402	+		DDA3937_RS04920	0.15	-0.8
1,102,402	+		DDA3937_RS04920	0.15	-0.8
1,102,402	+		DDA3937_RS04920	0.15	-0.9
1,102,403	-		DDA3937_RS04920	0.15	+1.3
1,102,545	-		DDA3937_RS04920	0.19	+0.3
1,102,545	-		DDA3937_RS04920	0.19	-2.5
1,102,573	-		DDA3937_RS04920	0.20	-0.8
1,102,573	-		DDA3937_RS04920	0.20	-0.8
1,102,573	-		DDA3937_RS04920	0.20	-1.2
1,102,576	+		DDA3937_RS04920	0.20	+2.0
1,102,576	+		DDA3937_RS04920	0.20	-0.0
1,102,576	+		DDA3937_RS04920	0.20	-0.3
1,102,592	+		DDA3937_RS04920	0.21	+0.3
1,102,708	+				-0.6
1,102,726	+		DDA3937_RS04920	0.25	-0.5
1,102,726	+		DDA3937_RS04920	0.25	-0.7
1,102,727	-		DDA3937_RS04920	0.25	-0.6
1,102,863	+		DDA3937_RS04920	0.29	+0.2
1,102,864	-		DDA3937_RS04920	0.29	-0.6
1,102,922	+		DDA3937_RS04920	0.31	-0.1
1,102,923	-		DDA3937_RS04920	0.31	-0.6
1,102,923	-		DDA3937_RS04920	0.31	-1.3
1,102,923	-		DDA3937_RS04920	0.31	+1.4
1,102,964	+		DDA3937_RS04920	0.33	-0.3
1,102,965	-		DDA3937_RS04920	0.33	-0.8
1,103,026	+		DDA3937_RS04920	0.35	-0.2
1,103,064	-		DDA3937_RS04920	0.36	-0.2
1,103,064	-		DDA3937_RS04920	0.36	-1.2
1,103,105	+		DDA3937_RS04920	0.37	-0.8
1,103,105	+		DDA3937_RS04920	0.37	+0.7
1,103,106	-		DDA3937_RS04920	0.37	-0.5
1,103,125	+		DDA3937_RS04920	0.38	-0.6
1,103,125	+		DDA3937_RS04920	0.38	-0.7
1,103,126	-		DDA3937_RS04920	0.38	-2.4
1,103,126	-		DDA3937_RS04920	0.38	-0.2
1,103,126	-		DDA3937_RS04920	0.38	-1.0
1,103,126	-		DDA3937_RS04920	0.38	-0.3
1,103,157	+		DDA3937_RS04920	0.39	-1.7
1,103,174	-		DDA3937_RS04920	0.39	-0.2
1,103,245	+				+0.0
1,103,246	-		DDA3937_RS04920	0.42	+0.4
1,103,246	-		DDA3937_RS04920	0.42	+1.0
1,103,248	+		DDA3937_RS04920	0.42	-0.3
1,103,249	-		DDA3937_RS04920	0.42	-0.5
1,103,400	-		DDA3937_RS04920	0.46	+0.4
1,103,420	-		DDA3937_RS04920	0.47	-1.2
1,103,522	-		DDA3937_RS04920	0.50	+0.2
1,103,528	+		DDA3937_RS04920	0.51	-0.6
1,103,528	+		DDA3937_RS04920	0.51	+0.3
1,103,529	-		DDA3937_RS04920	0.51	-2.1
1,103,545	+		DDA3937_RS04920	0.51	+0.1
1,103,545	+		DDA3937_RS04920	0.51	-0.5
1,103,545	+		DDA3937_RS04920	0.51	-1.3
1,103,545	+		DDA3937_RS04920	0.51	+0.3
1,103,545	+		DDA3937_RS04920	0.51	-1.5
1,103,545	+		DDA3937_RS04920	0.51	-1.1
1,103,545	+		DDA3937_RS04920	0.51	-0.1
1,103,546	-		DDA3937_RS04920	0.51	-1.3
1,103,546	-		DDA3937_RS04920	0.51	-0.8
1,103,546	-				-0.6
1,103,546	-		DDA3937_RS04920	0.51	+0.3
1,103,565	+		DDA3937_RS04920	0.52	-1.4
1,103,566	-		DDA3937_RS04920	0.52	-1.2
1,103,751	+		DDA3937_RS04920	0.58	-0.5
1,103,752	-		DDA3937_RS04920	0.58	+1.0
1,103,752	-		DDA3937_RS04920	0.58	-0.2
1,103,752	-		DDA3937_RS04920	0.58	+0.2
1,103,774	+		DDA3937_RS04920	0.58	+0.1
1,103,827	+		DDA3937_RS04920	0.60	+1.0
1,103,980	+		DDA3937_RS04920	0.65	-0.1
1,103,981	-		DDA3937_RS04920	0.65	+0.4
1,103,984	+		DDA3937_RS04920	0.65	+0.7
1,103,984	+		DDA3937_RS04920	0.65	-1.0
1,103,984	+		DDA3937_RS04920	0.65	-0.7
1,103,985	-				+1.0
1,103,985	-		DDA3937_RS04920	0.65	-0.7
1,104,106	-		DDA3937_RS04920	0.69	+0.8
1,104,179	+		DDA3937_RS04920	0.71	+0.1
1,104,193	+		DDA3937_RS04920	0.72	+0.1
1,104,293	+		DDA3937_RS04920	0.75	+0.8
1,104,294	-		DDA3937_RS04920	0.75	-1.0
1,104,338	+		DDA3937_RS04920	0.76	-2.2
1,104,339	-		DDA3937_RS04920	0.76	+1.7
1,104,339	-		DDA3937_RS04920	0.76	+0.5
1,104,348	-		DDA3937_RS04920	0.77	-0.4
1,104,485	+		DDA3937_RS04920	0.81	+0.1
1,104,529	+		DDA3937_RS04920	0.82	-0.9
1,104,529	+		DDA3937_RS04920	0.82	+0.3
1,104,529	+		DDA3937_RS04920	0.82	-0.5
1,104,530	-		DDA3937_RS04920	0.82	-1.0
1,104,530	-		DDA3937_RS04920	0.82	-1.5
1,104,533	+		DDA3937_RS04920	0.82	-0.5
1,104,533	+		DDA3937_RS04920	0.82	-0.9
1,104,533	+		DDA3937_RS04920	0.82	-1.0
1,104,533	+		DDA3937_RS04920	0.82	+0.6
1,104,534	-		DDA3937_RS04920	0.82	-0.4
1,104,534	-		DDA3937_RS04920	0.82	-1.1
1,104,534	-		DDA3937_RS04920	0.82	-0.6
1,104,539	+		DDA3937_RS04920	0.83	-0.1
1,104,539	+		DDA3937_RS04920	0.83	+1.3
1,104,539	+		DDA3937_RS04920	0.83	-0.2
1,104,539	+		DDA3937_RS04920	0.83	-1.9
1,104,539	+				+2.3
1,104,539	+		DDA3937_RS04920	0.83	-0.2
1,104,539	+		DDA3937_RS04920	0.83	-1.2
1,104,539	+		DDA3937_RS04920	0.83	+0.0
1,104,539	+		DDA3937_RS04920	0.83	-0.5
1,104,539	+		DDA3937_RS04920	0.83	-2.2
1,104,540	-		DDA3937_RS04920	0.83	+0.3
1,104,540	-		DDA3937_RS04920	0.83	-0.6
1,104,540	-		DDA3937_RS04920	0.83	-0.5
1,104,540	-		DDA3937_RS04920	0.83	-0.5
1,104,540	-		DDA3937_RS04920	0.83	-0.9
1,104,540	-		DDA3937_RS04920	0.83	-2.3
1,104,540	-		DDA3937_RS04920	0.83	+0.0
1,104,540	-		DDA3937_RS04920	0.83	+0.4
1,104,540	-		DDA3937_RS04920	0.83	+0.0
1,104,540	-		DDA3937_RS04920	0.83	-1.0
1,104,540	-		DDA3937_RS04920	0.83	-0.3
1,104,540	-		DDA3937_RS04920	0.83	-0.1
1,104,541	+		DDA3937_RS04920	0.83	+0.6
1,104,541	+		DDA3937_RS04920	0.83	+0.7
1,104,541	+		DDA3937_RS04920	0.83	+0.2
1,104,541	+		DDA3937_RS04920	0.83	-0.7
1,104,541	+		DDA3937_RS04920	0.83	-2.4
1,104,542	-		DDA3937_RS04920	0.83	+0.1
1,104,542	-		DDA3937_RS04920	0.83	-1.5
1,104,661	+		DDA3937_RS04920	0.86	-0.6
1,104,708	+		DDA3937_RS04920	0.88	+0.6
1,104,755	+				+1.0
1,104,755	+		DDA3937_RS04920	0.89	-0.5
1,104,756	-		DDA3937_RS04920	0.89	+0.1
1,104,756	-		DDA3937_RS04920	0.89	-0.3
1,104,760	+		DDA3937_RS04920	0.90	+1.6
1,104,810	+				+0.7
1,104,843	-				-1.3
1,104,870	+				-0.6
1,104,926	-				-0.7
1,104,928	+				-0.4
1,104,929	-				-0.3
1,104,952	+				-1.3
1,104,956	-				+0.2
1,105,075	+				+0.4
1,105,091	+				-0.2
1,105,092	-				+0.4
1,105,176	+				+0.2
1,105,202	+				-1.7
1,105,255	+				-0.6
1,105,255	+				-0.6
1,105,255	+				-0.1
1,105,370	+		DDA3937_RS04925	0.20	+0.4
1,105,371	-		DDA3937_RS04925	0.20	+1.9
1,105,371	-		DDA3937_RS04925	0.20	-0.2
1,105,392	+		DDA3937_RS04925	0.22	+0.9
1,105,393	-		DDA3937_RS04925	0.22	-2.9
1,105,407	-		DDA3937_RS04925	0.24	-0.8
1,105,432	-		DDA3937_RS04925	0.26	-0.1
1,105,432	-		DDA3937_RS04925	0.26	+2.8
1,105,462	+		DDA3937_RS04925	0.29	-0.4
1,105,462	+		DDA3937_RS04925	0.29	+0.4
1,105,463	-		DDA3937_RS04925	0.29	+0.4
1,105,463	-		DDA3937_RS04925	0.29	+0.0
1,105,466	+		DDA3937_RS04925	0.29	+1.6
1,105,466	+		DDA3937_RS04925	0.29	+0.8
1,105,466	+		DDA3937_RS04925	0.29	-1.2
1,105,466	+		DDA3937_RS04925	0.29	+0.3
1,105,467	-		DDA3937_RS04925	0.30	-0.7
1,105,502	+		DDA3937_RS04925	0.33	-0.1
1,105,575	+		DDA3937_RS04925	0.40	-0.6
1,105,576	-		DDA3937_RS04925	0.40	-0.5
1,105,576	-		DDA3937_RS04925	0.40	-0.5
1,105,577	+		DDA3937_RS04925	0.40	-0.5
1,105,578	-		DDA3937_RS04925	0.40	-0.1
1,105,634	+		DDA3937_RS04925	0.46	-0.3
1,105,676	+		DDA3937_RS04925	0.50	+0.3
1,105,677	-		DDA3937_RS04925	0.50	-2.0
1,105,677	-		DDA3937_RS04925	0.50	-3.4
1,105,757	+		DDA3937_RS04925	0.57	+0.4
1,105,758	-		DDA3937_RS04925	0.58	+0.6
1,105,758	-		DDA3937_RS04925	0.58	+0.1
1,105,763	+		DDA3937_RS04925	0.58	-1.2
1,105,764	-		DDA3937_RS04925	0.58	+0.4
1,105,764	-		DDA3937_RS04925	0.58	+1.3
1,105,814	+		DDA3937_RS04925	0.63	+0.4
1,105,814	+		DDA3937_RS04925	0.63	-1.0
1,105,814	+		DDA3937_RS04925	0.63	+0.4
1,105,815	-		DDA3937_RS04925	0.63	-1.9
1,105,815	-		DDA3937_RS04925	0.63	+0.4
1,105,816	+		DDA3937_RS04925	0.63	-0.5
1,105,816	+		DDA3937_RS04925	0.63	+0.6
1,105,816	+		DDA3937_RS04925	0.63	-0.7
1,105,816	+		DDA3937_RS04925	0.63	-0.1
1,105,817	-		DDA3937_RS04925	0.63	+1.1
1,105,817	-		DDA3937_RS04925	0.63	-0.8
1,105,817	-		DDA3937_RS04925	0.63	-0.6
1,105,817	-		DDA3937_RS04925	0.63	-0.6
1,105,817	-		DDA3937_RS04925	0.63	+0.1
1,105,817	-		DDA3937_RS04925	0.63	+1.0
1,105,817	-				+0.0
1,105,826	+		DDA3937_RS04925	0.64	-0.6
1,105,826	+		DDA3937_RS04925	0.64	-0.5
1,105,826	+		DDA3937_RS04925	0.64	+0.8
1,105,827	-		DDA3937_RS04925	0.64	-0.6
1,105,827	-		DDA3937_RS04925	0.64	-0.7
1,105,995	+		DDA3937_RS04925	0.80	+0.4
1,105,996	-		DDA3937_RS04925	0.80	-0.2
1,105,997	+				-0.6
1,105,997	+		DDA3937_RS04925	0.80	+0.4
1,105,997	+		DDA3937_RS04925	0.80	-0.3
1,105,997	+		DDA3937_RS04925	0.80	-0.9
1,105,997	+				+0.4
1,105,997	+		DDA3937_RS04925	0.80	-0.2
1,105,997	+		DDA3937_RS04925	0.80	-1.2
1,105,998	-		DDA3937_RS04925	0.81	-0.0
1,105,998	-		DDA3937_RS04925	0.81	+0.0
1,105,998	-		DDA3937_RS04925	0.81	+0.6
1,105,998	-		DDA3937_RS04925	0.81	-1.3
1,106,068	-		DDA3937_RS04925	0.87	-1.2