Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04515 and DDA3937_RS04520 are separated by 76 nucleotides DDA3937_RS04520 and DDA3937_RS04525 are separated by 130 nucleotides
DDA3937_RS04515: DDA3937_RS04515 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 996,993 to 997,646
_RS04515
DDA3937_RS04520: DDA3937_RS04520 - SAM-dependent methyltransferase TehB, at 997,723 to 998,586
_RS04520
DDA3937_RS04525: DDA3937_RS04525 - NADH:flavorubredoxin reductase NorW, at 998,717 to 999,880
_RS04525
Position (kb) 997
998
999 Strain fitness (log2 ratio) -2
-1
0
1
2 at 996.972 kb on + strand at 997.648 kb on + strand at 997.648 kb on + strand at 997.648 kb on + strand at 997.648 kb on + strand at 997.649 kb on - strand at 997.649 kb on - strand at 997.649 kb on - strand at 997.649 kb on - strand at 997.650 kb on + strand at 997.650 kb on + strand at 997.650 kb on + strand at 997.768 kb on - strand at 997.817 kb on + strand, within DDA3937_RS04520 at 997.818 kb on - strand, within DDA3937_RS04520 at 997.818 kb on - strand, within DDA3937_RS04520 at 997.844 kb on + strand, within DDA3937_RS04520 at 997.844 kb on + strand, within DDA3937_RS04520 at 997.845 kb on - strand, within DDA3937_RS04520 at 997.845 kb on - strand, within DDA3937_RS04520 at 997.932 kb on + strand, within DDA3937_RS04520 at 997.932 kb on + strand, within DDA3937_RS04520 at 997.935 kb on - strand, within DDA3937_RS04520 at 997.935 kb on - strand, within DDA3937_RS04520 at 998.004 kb on + strand, within DDA3937_RS04520 at 998.004 kb on + strand, within DDA3937_RS04520 at 998.005 kb on - strand, within DDA3937_RS04520 at 998.005 kb on - strand, within DDA3937_RS04520 at 998.018 kb on - strand, within DDA3937_RS04520 at 998.034 kb on - strand, within DDA3937_RS04520 at 998.112 kb on + strand, within DDA3937_RS04520 at 998.112 kb on + strand, within DDA3937_RS04520 at 998.112 kb on + strand, within DDA3937_RS04520 at 998.112 kb on + strand, within DDA3937_RS04520 at 998.112 kb on + strand, within DDA3937_RS04520 at 998.112 kb on + strand, within DDA3937_RS04520 at 998.112 kb on + strand, within DDA3937_RS04520 at 998.112 kb on + strand, within DDA3937_RS04520 at 998.112 kb on + strand, within DDA3937_RS04520 at 998.113 kb on - strand, within DDA3937_RS04520 at 998.113 kb on - strand, within DDA3937_RS04520 at 998.115 kb on + strand, within DDA3937_RS04520 at 998.115 kb on + strand, within DDA3937_RS04520 at 998.115 kb on + strand, within DDA3937_RS04520 at 998.115 kb on + strand, within DDA3937_RS04520 at 998.115 kb on + strand, within DDA3937_RS04520 at 998.115 kb on + strand, within DDA3937_RS04520 at 998.115 kb on + strand, within DDA3937_RS04520 at 998.115 kb on + strand, within DDA3937_RS04520 at 998.116 kb on - strand, within DDA3937_RS04520 at 998.116 kb on - strand, within DDA3937_RS04520 at 998.116 kb on - strand, within DDA3937_RS04520 at 998.116 kb on - strand, within DDA3937_RS04520 at 998.116 kb on - strand, within DDA3937_RS04520 at 998.180 kb on + strand, within DDA3937_RS04520 at 998.181 kb on - strand, within DDA3937_RS04520 at 998.237 kb on + strand, within DDA3937_RS04520 at 998.237 kb on + strand, within DDA3937_RS04520 at 998.238 kb on - strand, within DDA3937_RS04520 at 998.282 kb on + strand, within DDA3937_RS04520 at 998.282 kb on + strand, within DDA3937_RS04520 at 998.283 kb on - strand, within DDA3937_RS04520 at 998.294 kb on + strand at 998.294 kb on + strand, within DDA3937_RS04520 at 998.294 kb on + strand, within DDA3937_RS04520 at 998.294 kb on + strand, within DDA3937_RS04520 at 998.295 kb on - strand, within DDA3937_RS04520 at 998.295 kb on - strand, within DDA3937_RS04520 at 998.295 kb on - strand, within DDA3937_RS04520 at 998.297 kb on + strand, within DDA3937_RS04520 at 998.297 kb on + strand, within DDA3937_RS04520 at 998.297 kb on + strand, within DDA3937_RS04520 at 998.297 kb on + strand, within DDA3937_RS04520 at 998.297 kb on + strand, within DDA3937_RS04520 at 998.298 kb on - strand, within DDA3937_RS04520 at 998.298 kb on - strand, within DDA3937_RS04520 at 998.298 kb on - strand, within DDA3937_RS04520 at 998.315 kb on + strand, within DDA3937_RS04520 at 998.315 kb on + strand, within DDA3937_RS04520 at 998.323 kb on + strand, within DDA3937_RS04520 at 998.324 kb on - strand, within DDA3937_RS04520 at 998.382 kb on + strand at 998.382 kb on + strand, within DDA3937_RS04520 at 998.382 kb on + strand, within DDA3937_RS04520 at 998.382 kb on + strand, within DDA3937_RS04520 at 998.384 kb on + strand, within DDA3937_RS04520 at 998.384 kb on + strand, within DDA3937_RS04520 at 998.384 kb on + strand, within DDA3937_RS04520 at 998.385 kb on - strand at 998.385 kb on - strand, within DDA3937_RS04520 at 998.385 kb on - strand, within DDA3937_RS04520 at 998.385 kb on - strand, within DDA3937_RS04520 at 998.479 kb on + strand, within DDA3937_RS04520 at 998.502 kb on + strand at 998.502 kb on + strand at 998.502 kb on + strand at 998.503 kb on - strand at 998.503 kb on - strand at 998.565 kb on + strand at 998.566 kb on - strand at 998.567 kb on + strand at 998.567 kb on + strand at 998.567 kb on + strand at 998.586 kb on + strand at 998.586 kb on + strand at 998.587 kb on - strand at 998.620 kb on + strand at 998.620 kb on + strand at 998.620 kb on + strand at 998.620 kb on + strand at 998.621 kb on - strand at 998.621 kb on - strand at 998.624 kb on - strand at 998.685 kb on + strand at 998.685 kb on + strand at 998.686 kb on - strand at 998.697 kb on + strand at 998.697 kb on + strand at 998.697 kb on + strand at 998.697 kb on + strand at 998.698 kb on - strand at 998.698 kb on - strand at 998.705 kb on + strand at 998.705 kb on + strand at 998.817 kb on - strand at 998.883 kb on - strand, within DDA3937_RS04525 at 998.908 kb on + strand, within DDA3937_RS04525 at 998.908 kb on + strand, within DDA3937_RS04525 at 998.909 kb on - strand, within DDA3937_RS04525 at 998.909 kb on - strand, within DDA3937_RS04525 at 998.965 kb on + strand, within DDA3937_RS04525 at 998.969 kb on - strand, within DDA3937_RS04525 at 998.969 kb on - strand, within DDA3937_RS04525 at 998.981 kb on + strand, within DDA3937_RS04525 at 998.982 kb on - strand, within DDA3937_RS04525 at 998.982 kb on - strand, within DDA3937_RS04525 at 998.982 kb on - strand, within DDA3937_RS04525 at 998.982 kb on - strand, within DDA3937_RS04525 at 998.982 kb on - strand, within DDA3937_RS04525 at 998.983 kb on + strand, within DDA3937_RS04525 at 998.983 kb on + strand, within DDA3937_RS04525 at 998.983 kb on + strand, within DDA3937_RS04525 at 998.983 kb on + strand, within DDA3937_RS04525 at 998.983 kb on + strand, within DDA3937_RS04525 at 998.983 kb on + strand, within DDA3937_RS04525 at 998.983 kb on + strand, within DDA3937_RS04525 at 998.983 kb on + strand, within DDA3937_RS04525 at 998.984 kb on - strand, within DDA3937_RS04525 at 998.984 kb on - strand, within DDA3937_RS04525 at 998.984 kb on - strand, within DDA3937_RS04525 at 998.984 kb on - strand, within DDA3937_RS04525 at 998.984 kb on - strand, within DDA3937_RS04525 at 998.984 kb on - strand, within DDA3937_RS04525 at 999.011 kb on + strand, within DDA3937_RS04525 at 999.076 kb on - strand at 999.079 kb on + strand, within DDA3937_RS04525 at 999.079 kb on + strand, within DDA3937_RS04525 at 999.079 kb on + strand, within DDA3937_RS04525 at 999.094 kb on + strand, within DDA3937_RS04525 at 999.094 kb on + strand, within DDA3937_RS04525 at 999.095 kb on - strand, within DDA3937_RS04525 at 999.095 kb on - strand, within DDA3937_RS04525 at 999.160 kb on + strand, within DDA3937_RS04525 at 999.161 kb on - strand, within DDA3937_RS04525 at 999.444 kb on - strand, within DDA3937_RS04525 at 999.490 kb on - strand, within DDA3937_RS04525 at 999.583 kb on - strand, within DDA3937_RS04525 at 999.583 kb on - strand, within DDA3937_RS04525
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 996,972 + -1.1 997,648 + -0.5 997,648 + -0.8 997,648 + -0.6 997,648 + -2.4 997,649 - +0.0 997,649 - -1.5 997,649 - -1.3 997,649 - +0.4 997,650 + -1.2 997,650 + -0.2 997,650 + -0.2 997,768 - +0.1 997,817 + DDA3937_RS04520 0.11 +0.8 997,818 - DDA3937_RS04520 0.11 -1.3 997,818 - DDA3937_RS04520 0.11 -1.7 997,844 + DDA3937_RS04520 0.14 -0.1 997,844 + DDA3937_RS04520 0.14 -0.6 997,845 - DDA3937_RS04520 0.14 -0.6 997,845 - DDA3937_RS04520 0.14 -1.4 997,932 + DDA3937_RS04520 0.24 -0.9 997,932 + DDA3937_RS04520 0.24 -0.2 997,935 - DDA3937_RS04520 0.25 -1.0 997,935 - DDA3937_RS04520 0.25 -0.9 998,004 + DDA3937_RS04520 0.33 +0.6 998,004 + DDA3937_RS04520 0.33 +0.4 998,005 - DDA3937_RS04520 0.33 -1.0 998,005 - DDA3937_RS04520 0.33 -1.8 998,018 - DDA3937_RS04520 0.34 -0.2 998,034 - DDA3937_RS04520 0.36 +0.3 998,112 + DDA3937_RS04520 0.45 +0.4 998,112 + DDA3937_RS04520 0.45 -0.3 998,112 + DDA3937_RS04520 0.45 -1.2 998,112 + DDA3937_RS04520 0.45 +0.2 998,112 + DDA3937_RS04520 0.45 +1.3 998,112 + DDA3937_RS04520 0.45 +0.8 998,112 + DDA3937_RS04520 0.45 +0.1 998,112 + DDA3937_RS04520 0.45 +0.1 998,112 + DDA3937_RS04520 0.45 -1.0 998,113 - DDA3937_RS04520 0.45 -0.6 998,113 - DDA3937_RS04520 0.45 -0.9 998,115 + DDA3937_RS04520 0.45 +2.5 998,115 + DDA3937_RS04520 0.45 +0.3 998,115 + DDA3937_RS04520 0.45 -0.3 998,115 + DDA3937_RS04520 0.45 -0.5 998,115 + DDA3937_RS04520 0.45 -0.6 998,115 + DDA3937_RS04520 0.45 -1.7 998,115 + DDA3937_RS04520 0.45 -1.4 998,115 + DDA3937_RS04520 0.45 -1.2 998,116 - DDA3937_RS04520 0.45 +0.4 998,116 - DDA3937_RS04520 0.45 -0.4 998,116 - DDA3937_RS04520 0.45 -0.1 998,116 - DDA3937_RS04520 0.45 +0.7 998,116 - DDA3937_RS04520 0.45 -0.3 998,180 + DDA3937_RS04520 0.53 +0.2 998,181 - DDA3937_RS04520 0.53 -0.2 998,237 + DDA3937_RS04520 0.59 +0.4 998,237 + DDA3937_RS04520 0.59 -0.3 998,238 - DDA3937_RS04520 0.60 +0.7 998,282 + DDA3937_RS04520 0.65 +1.0 998,282 + DDA3937_RS04520 0.65 -1.0 998,283 - DDA3937_RS04520 0.65 -0.6 998,294 + +0.0 998,294 + DDA3937_RS04520 0.66 -0.6 998,294 + DDA3937_RS04520 0.66 -1.2 998,294 + DDA3937_RS04520 0.66 +0.0 998,295 - DDA3937_RS04520 0.66 -0.4 998,295 - DDA3937_RS04520 0.66 -0.6 998,295 - DDA3937_RS04520 0.66 +1.3 998,297 + DDA3937_RS04520 0.66 -1.2 998,297 + DDA3937_RS04520 0.66 +1.3 998,297 + DDA3937_RS04520 0.66 -2.0 998,297 + DDA3937_RS04520 0.66 +0.3 998,297 + DDA3937_RS04520 0.66 +0.0 998,298 - DDA3937_RS04520 0.67 -1.0 998,298 - DDA3937_RS04520 0.67 +1.4 998,298 - DDA3937_RS04520 0.67 +0.1 998,315 + DDA3937_RS04520 0.69 -1.0 998,315 + DDA3937_RS04520 0.69 +1.0 998,323 + DDA3937_RS04520 0.69 +0.2 998,324 - DDA3937_RS04520 0.70 -0.8 998,382 + +2.0 998,382 + DDA3937_RS04520 0.76 +0.3 998,382 + DDA3937_RS04520 0.76 +0.2 998,382 + DDA3937_RS04520 0.76 +1.0 998,384 + DDA3937_RS04520 0.77 -1.6 998,384 + DDA3937_RS04520 0.77 -0.6 998,384 + DDA3937_RS04520 0.77 -0.4 998,385 - +0.0 998,385 - DDA3937_RS04520 0.77 -0.2 998,385 - DDA3937_RS04520 0.77 -0.3 998,385 - DDA3937_RS04520 0.77 +0.0 998,479 + DDA3937_RS04520 0.88 +0.0 998,502 + -0.3 998,502 + -0.4 998,502 + -0.4 998,503 - +1.4 998,503 - -0.2 998,565 + +0.8 998,566 - -0.9 998,567 + -1.0 998,567 + -0.6 998,567 + -1.4 998,586 + +1.4 998,586 + -0.1 998,587 - +0.0 998,620 + -0.2 998,620 + +0.7 998,620 + +0.8 998,620 + -1.7 998,621 - +1.6 998,621 - -0.4 998,624 - -0.8 998,685 + -0.0 998,685 + +0.0 998,686 - -0.0 998,697 + +0.2 998,697 + +0.5 998,697 + -0.6 998,697 + -1.0 998,698 - -0.2 998,698 - +0.2 998,705 + +0.4 998,705 + +0.1 998,817 - +0.4 998,883 - DDA3937_RS04525 0.14 -1.1 998,908 + DDA3937_RS04525 0.16 +1.8 998,908 + DDA3937_RS04525 0.16 +0.3 998,909 - DDA3937_RS04525 0.16 +0.7 998,909 - DDA3937_RS04525 0.16 +0.0 998,965 + DDA3937_RS04525 0.21 +0.7 998,969 - DDA3937_RS04525 0.22 -2.1 998,969 - DDA3937_RS04525 0.22 -2.4 998,981 + DDA3937_RS04525 0.23 +0.5 998,982 - DDA3937_RS04525 0.23 -0.2 998,982 - DDA3937_RS04525 0.23 -0.3 998,982 - DDA3937_RS04525 0.23 +0.3 998,982 - DDA3937_RS04525 0.23 -1.8 998,982 - DDA3937_RS04525 0.23 -0.2 998,983 + DDA3937_RS04525 0.23 -0.5 998,983 + DDA3937_RS04525 0.23 -1.2 998,983 + DDA3937_RS04525 0.23 +0.4 998,983 + DDA3937_RS04525 0.23 +0.4 998,983 + DDA3937_RS04525 0.23 -0.6 998,983 + DDA3937_RS04525 0.23 -0.8 998,983 + DDA3937_RS04525 0.23 -0.4 998,983 + DDA3937_RS04525 0.23 -0.2 998,984 - DDA3937_RS04525 0.23 -1.0 998,984 - DDA3937_RS04525 0.23 +1.0 998,984 - DDA3937_RS04525 0.23 -1.5 998,984 - DDA3937_RS04525 0.23 +0.2 998,984 - DDA3937_RS04525 0.23 +0.3 998,984 - DDA3937_RS04525 0.23 -1.0 999,011 + DDA3937_RS04525 0.25 -1.2 999,076 - +0.0 999,079 + DDA3937_RS04525 0.31 -0.2 999,079 + DDA3937_RS04525 0.31 -0.6 999,079 + DDA3937_RS04525 0.31 -0.6 999,094 + DDA3937_RS04525 0.32 +1.3 999,094 + DDA3937_RS04525 0.32 +0.7 999,095 - DDA3937_RS04525 0.32 +0.5 999,095 - DDA3937_RS04525 0.32 +0.1 999,160 + DDA3937_RS04525 0.38 +0.3 999,161 - DDA3937_RS04525 0.38 -0.5 999,444 - DDA3937_RS04525 0.62 -0.5 999,490 - DDA3937_RS04525 0.66 -0.8 999,583 - DDA3937_RS04525 0.74 -0.5 999,583 - DDA3937_RS04525 0.74 -0.7
Or see this region's nucleotide sequence