Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04295 and DDA3937_RS21940 are separated by 177 nucleotides DDA3937_RS21940 and DDA3937_RS04300 are separated by 181 nucleotides DDA3937_RS04300 and DDA3937_RS04305 are separated by 587 nucleotides
DDA3937_RS04295: DDA3937_RS04295 - hypothetical protein, at 944,414 to 946,066
_RS04295
DDA3937_RS21940: DDA3937_RS21940 - hypothetical protein, at 946,244 to 946,435
_RS21940
DDA3937_RS04300: DDA3937_RS04300 - zinc ribbon domain-containing protein, at 946,617 to 947,123
_RS04300
DDA3937_RS04305: DDA3937_RS04305 - SsrA-binding protein SmpB, at 947,711 to 948,193
_RS04305
Position (kb) 946
947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 945.634 kb on + strand, within DDA3937_RS04295 at 945.690 kb on + strand, within DDA3937_RS04295 at 945.690 kb on + strand, within DDA3937_RS04295 at 945.690 kb on + strand, within DDA3937_RS04295 at 945.690 kb on + strand, within DDA3937_RS04295 at 945.691 kb on - strand, within DDA3937_RS04295 at 945.691 kb on - strand, within DDA3937_RS04295 at 945.691 kb on - strand, within DDA3937_RS04295 at 945.691 kb on - strand, within DDA3937_RS04295 at 945.732 kb on - strand, within DDA3937_RS04295 at 945.757 kb on + strand, within DDA3937_RS04295 at 945.758 kb on - strand, within DDA3937_RS04295 at 945.758 kb on - strand, within DDA3937_RS04295 at 945.758 kb on - strand, within DDA3937_RS04295 at 945.758 kb on - strand, within DDA3937_RS04295 at 945.758 kb on - strand, within DDA3937_RS04295 at 945.786 kb on + strand, within DDA3937_RS04295 at 945.816 kb on + strand, within DDA3937_RS04295 at 945.817 kb on - strand, within DDA3937_RS04295 at 945.858 kb on + strand, within DDA3937_RS04295 at 945.859 kb on - strand, within DDA3937_RS04295 at 945.859 kb on - strand at 945.859 kb on - strand, within DDA3937_RS04295 at 945.859 kb on - strand, within DDA3937_RS04295 at 945.859 kb on - strand, within DDA3937_RS04295 at 945.859 kb on - strand, within DDA3937_RS04295 at 945.973 kb on + strand at 945.973 kb on + strand at 945.973 kb on + strand at 945.974 kb on - strand at 945.977 kb on - strand at 946.005 kb on + strand at 946.005 kb on + strand at 946.006 kb on - strand at 946.046 kb on + strand at 946.046 kb on + strand at 946.046 kb on + strand at 946.047 kb on - strand at 946.047 kb on - strand at 946.047 kb on - strand at 946.047 kb on - strand at 946.047 kb on - strand at 946.075 kb on + strand at 946.075 kb on + strand at 946.080 kb on - strand at 946.107 kb on + strand at 946.162 kb on + strand at 946.200 kb on + strand at 946.261 kb on - strand at 946.505 kb on + strand at 946.518 kb on + strand at 946.518 kb on + strand at 946.519 kb on - strand at 946.519 kb on - strand at 946.528 kb on + strand at 946.529 kb on - strand at 946.529 kb on - strand at 946.618 kb on + strand at 946.619 kb on - strand at 946.635 kb on - strand at 946.658 kb on + strand at 946.659 kb on - strand at 946.672 kb on + strand, within DDA3937_RS04300 at 946.672 kb on + strand, within DDA3937_RS04300 at 946.673 kb on - strand, within DDA3937_RS04300 at 946.673 kb on - strand, within DDA3937_RS04300 at 946.673 kb on - strand, within DDA3937_RS04300 at 946.684 kb on + strand, within DDA3937_RS04300 at 946.684 kb on + strand, within DDA3937_RS04300 at 946.684 kb on + strand, within DDA3937_RS04300 at 946.684 kb on + strand, within DDA3937_RS04300 at 946.685 kb on - strand, within DDA3937_RS04300 at 946.685 kb on - strand, within DDA3937_RS04300 at 946.685 kb on - strand, within DDA3937_RS04300 at 946.685 kb on - strand, within DDA3937_RS04300 at 946.822 kb on + strand, within DDA3937_RS04300 at 946.822 kb on + strand, within DDA3937_RS04300 at 946.822 kb on + strand, within DDA3937_RS04300 at 946.822 kb on + strand, within DDA3937_RS04300 at 946.823 kb on - strand, within DDA3937_RS04300 at 946.881 kb on - strand, within DDA3937_RS04300 at 946.975 kb on - strand, within DDA3937_RS04300 at 946.975 kb on - strand, within DDA3937_RS04300 at 946.976 kb on + strand, within DDA3937_RS04300 at 946.977 kb on - strand, within DDA3937_RS04300 at 946.977 kb on - strand, within DDA3937_RS04300 at 946.977 kb on - strand, within DDA3937_RS04300 at 946.977 kb on - strand, within DDA3937_RS04300 at 947.004 kb on + strand, within DDA3937_RS04300 at 947.004 kb on + strand, within DDA3937_RS04300 at 947.004 kb on + strand, within DDA3937_RS04300 at 947.004 kb on + strand, within DDA3937_RS04300 at 947.085 kb on + strand at 947.085 kb on + strand at 947.086 kb on - strand at 947.086 kb on - strand at 947.086 kb on - strand at 947.086 kb on - strand at 947.096 kb on + strand at 947.096 kb on + strand at 947.097 kb on - strand at 947.097 kb on - strand at 947.097 kb on - strand at 947.097 kb on - strand at 947.097 kb on - strand at 947.115 kb on + strand at 947.123 kb on + strand at 947.153 kb on + strand at 947.154 kb on - strand at 947.154 kb on - strand at 947.154 kb on - strand at 947.157 kb on + strand at 947.158 kb on - strand at 947.158 kb on - strand at 947.158 kb on - strand at 947.158 kb on - strand at 947.183 kb on - strand at 947.200 kb on + strand at 947.201 kb on - strand at 947.237 kb on - strand at 947.343 kb on - strand at 947.397 kb on + strand at 947.697 kb on + strand at 947.698 kb on - strand at 947.698 kb on - strand at 947.744 kb on - strand at 948.030 kb on + strand, within DDA3937_RS04305 at 948.031 kb on - strand, within DDA3937_RS04305 at 948.031 kb on - strand, within DDA3937_RS04305 at 948.116 kb on + strand, within DDA3937_RS04305
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 945,634 + DDA3937_RS04295 0.74 +1.0 945,690 + DDA3937_RS04295 0.77 -0.6 945,690 + DDA3937_RS04295 0.77 +1.0 945,690 + DDA3937_RS04295 0.77 -0.5 945,690 + DDA3937_RS04295 0.77 -0.9 945,691 - DDA3937_RS04295 0.77 -1.5 945,691 - DDA3937_RS04295 0.77 -0.7 945,691 - DDA3937_RS04295 0.77 -0.3 945,691 - DDA3937_RS04295 0.77 -1.0 945,732 - DDA3937_RS04295 0.80 +1.5 945,757 + DDA3937_RS04295 0.81 -1.5 945,758 - DDA3937_RS04295 0.81 +0.4 945,758 - DDA3937_RS04295 0.81 +0.2 945,758 - DDA3937_RS04295 0.81 +1.3 945,758 - DDA3937_RS04295 0.81 +1.8 945,758 - DDA3937_RS04295 0.81 +0.4 945,786 + DDA3937_RS04295 0.83 -0.4 945,816 + DDA3937_RS04295 0.85 -1.0 945,817 - DDA3937_RS04295 0.85 -0.1 945,858 + DDA3937_RS04295 0.87 -1.3 945,859 - DDA3937_RS04295 0.87 -2.1 945,859 - +0.0 945,859 - DDA3937_RS04295 0.87 -0.4 945,859 - DDA3937_RS04295 0.87 -0.4 945,859 - DDA3937_RS04295 0.87 +0.4 945,859 - DDA3937_RS04295 0.87 +0.0 945,973 + -1.3 945,973 + +3.0 945,973 + -1.2 945,974 - +0.3 945,977 - -0.8 946,005 + -1.1 946,005 + -1.2 946,006 - -1.2 946,046 + -1.7 946,046 + +0.4 946,046 + -1.4 946,047 - -0.3 946,047 - +2.0 946,047 - -0.1 946,047 - -1.4 946,047 - +1.3 946,075 + -3.2 946,075 + -0.6 946,080 - -0.7 946,107 + -0.4 946,162 + -1.2 946,200 + -0.8 946,261 - +1.2 946,505 + +0.0 946,518 + +1.0 946,518 + -0.5 946,519 - -0.7 946,519 - +2.0 946,528 + -0.4 946,529 - -0.2 946,529 - +0.0 946,618 + +0.0 946,619 - -1.0 946,635 - +1.0 946,658 + +0.1 946,659 - -0.9 946,672 + DDA3937_RS04300 0.11 +0.2 946,672 + DDA3937_RS04300 0.11 +2.0 946,673 - DDA3937_RS04300 0.11 -0.4 946,673 - DDA3937_RS04300 0.11 +0.1 946,673 - DDA3937_RS04300 0.11 -0.5 946,684 + DDA3937_RS04300 0.13 -0.3 946,684 + DDA3937_RS04300 0.13 +0.3 946,684 + DDA3937_RS04300 0.13 +0.4 946,684 + DDA3937_RS04300 0.13 -0.1 946,685 - DDA3937_RS04300 0.13 +1.2 946,685 - DDA3937_RS04300 0.13 -2.6 946,685 - DDA3937_RS04300 0.13 -0.9 946,685 - DDA3937_RS04300 0.13 -0.4 946,822 + DDA3937_RS04300 0.40 -0.2 946,822 + DDA3937_RS04300 0.40 -0.4 946,822 + DDA3937_RS04300 0.40 -0.8 946,822 + DDA3937_RS04300 0.40 -1.2 946,823 - DDA3937_RS04300 0.41 +0.3 946,881 - DDA3937_RS04300 0.52 -1.0 946,975 - DDA3937_RS04300 0.71 -0.3 946,975 - DDA3937_RS04300 0.71 +5.1 946,976 + DDA3937_RS04300 0.71 +0.6 946,977 - DDA3937_RS04300 0.71 +0.4 946,977 - DDA3937_RS04300 0.71 -1.2 946,977 - DDA3937_RS04300 0.71 -1.0 946,977 - DDA3937_RS04300 0.71 -0.8 947,004 + DDA3937_RS04300 0.76 +1.4 947,004 + DDA3937_RS04300 0.76 -1.6 947,004 + DDA3937_RS04300 0.76 +1.3 947,004 + DDA3937_RS04300 0.76 -0.4 947,085 + -1.3 947,085 + -0.2 947,086 - -1.3 947,086 - -0.2 947,086 - -1.2 947,086 - +0.9 947,096 + -1.5 947,096 + -0.3 947,097 - -0.5 947,097 - +0.6 947,097 - -0.3 947,097 - -1.4 947,097 - -1.3 947,115 + -0.5 947,123 + -1.1 947,153 + -0.3 947,154 - +0.4 947,154 - +0.0 947,154 - -1.3 947,157 + -1.0 947,158 - -0.9 947,158 - -0.8 947,158 - +1.0 947,158 - -0.5 947,183 - -1.4 947,200 + +0.0 947,201 - -0.4 947,237 - -1.9 947,343 - -0.9 947,397 + +0.0 947,697 + -0.4 947,698 - +1.0 947,698 - -1.0 947,744 - +0.6 948,030 + DDA3937_RS04305 0.66 +1.0 948,031 - DDA3937_RS04305 0.66 -1.0 948,031 - DDA3937_RS04305 0.66 -1.7 948,116 + DDA3937_RS04305 0.84 +2.4
Or see this region's nucleotide sequence