Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03645 and DDA3937_RS03650 are separated by 43 nucleotides DDA3937_RS03650 and DDA3937_RS03655 are separated by 106 nucleotides
DDA3937_RS03645: DDA3937_RS03645 - APC family permease, at 804,327 to 805,748
_RS03645
DDA3937_RS03650: DDA3937_RS03650 - MFS transporter, at 805,792 to 806,967
_RS03650
DDA3937_RS03655: DDA3937_RS03655 - LysR family transcriptional regulator, at 807,074 to 807,961
_RS03655
Position (kb) 805
806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 804.890 kb on + strand, within DDA3937_RS03645 at 804.978 kb on + strand, within DDA3937_RS03645 at 804.979 kb on - strand, within DDA3937_RS03645 at 805.013 kb on - strand, within DDA3937_RS03645 at 805.089 kb on + strand, within DDA3937_RS03645 at 805.090 kb on - strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.329 kb on + strand, within DDA3937_RS03645 at 805.330 kb on - strand, within DDA3937_RS03645 at 805.330 kb on - strand, within DDA3937_RS03645 at 805.369 kb on + strand, within DDA3937_RS03645 at 805.372 kb on + strand, within DDA3937_RS03645 at 805.372 kb on + strand, within DDA3937_RS03645 at 805.472 kb on - strand, within DDA3937_RS03645 at 805.641 kb on - strand at 805.641 kb on - strand at 805.731 kb on - strand at 805.731 kb on - strand at 805.731 kb on - strand at 805.780 kb on + strand at 805.802 kb on - strand at 805.850 kb on - strand at 805.953 kb on + strand, within DDA3937_RS03650 at 806.003 kb on + strand, within DDA3937_RS03650 at 806.004 kb on - strand, within DDA3937_RS03650 at 806.004 kb on - strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.027 kb on + strand, within DDA3937_RS03650 at 806.028 kb on - strand, within DDA3937_RS03650 at 806.028 kb on - strand, within DDA3937_RS03650 at 806.028 kb on - strand, within DDA3937_RS03650 at 806.045 kb on - strand, within DDA3937_RS03650 at 806.096 kb on + strand, within DDA3937_RS03650 at 806.154 kb on + strand, within DDA3937_RS03650 at 806.154 kb on + strand, within DDA3937_RS03650 at 806.343 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand, within DDA3937_RS03650 at 806.351 kb on + strand at 806.453 kb on - strand, within DDA3937_RS03650 at 806.684 kb on - strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.696 kb on + strand, within DDA3937_RS03650 at 806.697 kb on - strand, within DDA3937_RS03650 at 806.828 kb on + strand, within DDA3937_RS03650 at 806.829 kb on - strand, within DDA3937_RS03650 at 806.967 kb on + strand at 806.967 kb on + strand at 806.967 kb on + strand at 806.967 kb on + strand at 806.967 kb on + strand at 806.968 kb on - strand at 806.968 kb on - strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.971 kb on + strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.972 kb on - strand at 806.979 kb on + strand at 806.979 kb on + strand at 806.980 kb on - strand at 807.269 kb on + strand at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.292 kb on - strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.553 kb on + strand, within DDA3937_RS03655 at 807.560 kb on + strand, within DDA3937_RS03655 at 807.560 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.707 kb on + strand, within DDA3937_RS03655 at 807.707 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.798 kb on - strand, within DDA3937_RS03655 at 807.887 kb on + strand at 807.890 kb on + strand at 807.891 kb on - strand at 807.891 kb on - strand at 807.959 kb on + strand at 807.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 804,890 + DDA3937_RS03645 0.40 -0.3 804,978 + DDA3937_RS03645 0.46 -1.0 804,979 - DDA3937_RS03645 0.46 -0.5 805,013 - DDA3937_RS03645 0.48 -0.9 805,089 + DDA3937_RS03645 0.54 -0.2 805,090 - DDA3937_RS03645 0.54 +1.1 805,329 + DDA3937_RS03645 0.70 -1.0 805,329 + DDA3937_RS03645 0.70 -0.2 805,329 + DDA3937_RS03645 0.70 -1.0 805,329 + DDA3937_RS03645 0.70 -0.3 805,329 + DDA3937_RS03645 0.70 +0.5 805,330 - DDA3937_RS03645 0.71 +0.5 805,330 - DDA3937_RS03645 0.71 +0.3 805,369 + DDA3937_RS03645 0.73 -0.6 805,372 + DDA3937_RS03645 0.73 +0.8 805,372 + DDA3937_RS03645 0.73 +0.1 805,472 - DDA3937_RS03645 0.81 -0.4 805,641 - -0.6 805,641 - -0.6 805,731 - +1.3 805,731 - -1.0 805,731 - -0.3 805,780 + -2.4 805,802 - -1.6 805,850 - -1.1 805,953 + DDA3937_RS03650 0.14 -0.2 806,003 + DDA3937_RS03650 0.18 -0.4 806,004 - DDA3937_RS03650 0.18 -0.9 806,004 - DDA3937_RS03650 0.18 +0.3 806,027 + DDA3937_RS03650 0.20 -0.1 806,027 + DDA3937_RS03650 0.20 +0.7 806,027 + DDA3937_RS03650 0.20 +0.4 806,027 + DDA3937_RS03650 0.20 -0.6 806,027 + DDA3937_RS03650 0.20 -0.5 806,028 - DDA3937_RS03650 0.20 +0.2 806,028 - DDA3937_RS03650 0.20 +1.4 806,028 - DDA3937_RS03650 0.20 +0.5 806,045 - DDA3937_RS03650 0.22 -0.3 806,096 + DDA3937_RS03650 0.26 -1.2 806,154 + DDA3937_RS03650 0.31 -0.9 806,154 + DDA3937_RS03650 0.31 -0.7 806,343 + DDA3937_RS03650 0.47 +0.5 806,351 + DDA3937_RS03650 0.48 -2.5 806,351 + DDA3937_RS03650 0.48 +0.2 806,351 + +3.1 806,453 - DDA3937_RS03650 0.56 -0.1 806,684 - DDA3937_RS03650 0.76 +1.1 806,696 + DDA3937_RS03650 0.77 -0.9 806,696 + DDA3937_RS03650 0.77 +2.1 806,696 + DDA3937_RS03650 0.77 +2.1 806,697 - DDA3937_RS03650 0.77 +0.1 806,828 + DDA3937_RS03650 0.88 -0.2 806,829 - DDA3937_RS03650 0.88 +0.6 806,967 + +0.9 806,967 + -1.3 806,967 + -1.4 806,967 + +1.1 806,967 + -0.8 806,968 - -0.5 806,968 - -1.6 806,971 + -0.4 806,971 + -2.3 806,971 + -0.2 806,971 + -1.9 806,971 + -1.8 806,971 + -0.5 806,971 + +1.1 806,972 - -0.6 806,972 - -3.0 806,972 - -0.1 806,972 - -0.3 806,972 - -1.5 806,979 + +0.0 806,979 + -0.8 806,980 - -1.5 807,269 + +0.5 807,291 + DDA3937_RS03655 0.24 -2.1 807,291 + DDA3937_RS03655 0.24 +0.0 807,291 + DDA3937_RS03655 0.24 +1.1 807,291 + DDA3937_RS03655 0.24 +0.4 807,292 - DDA3937_RS03655 0.25 -1.0 807,294 + DDA3937_RS03655 0.25 -1.7 807,294 + DDA3937_RS03655 0.25 -1.1 807,294 + DDA3937_RS03655 0.25 -0.4 807,294 + DDA3937_RS03655 0.25 -0.1 807,294 + DDA3937_RS03655 0.25 -0.2 807,294 + DDA3937_RS03655 0.25 -0.1 807,294 + DDA3937_RS03655 0.25 -0.6 807,294 + DDA3937_RS03655 0.25 +1.8 807,295 - DDA3937_RS03655 0.25 -1.4 807,295 - DDA3937_RS03655 0.25 +0.1 807,295 - DDA3937_RS03655 0.25 -1.2 807,553 + DDA3937_RS03655 0.54 -0.8 807,560 + DDA3937_RS03655 0.55 +0.9 807,560 + DDA3937_RS03655 0.55 -1.2 807,587 + DDA3937_RS03655 0.58 -0.8 807,587 + DDA3937_RS03655 0.58 +0.0 807,587 + DDA3937_RS03655 0.58 +1.2 807,587 + DDA3937_RS03655 0.58 -0.1 807,588 - DDA3937_RS03655 0.58 -1.7 807,588 - DDA3937_RS03655 0.58 -0.3 807,588 - DDA3937_RS03655 0.58 +0.1 807,588 - DDA3937_RS03655 0.58 -0.2 807,588 - DDA3937_RS03655 0.58 -0.2 807,707 + DDA3937_RS03655 0.71 +0.0 807,707 + DDA3937_RS03655 0.71 -0.3 807,797 + DDA3937_RS03655 0.81 +0.2 807,797 + DDA3937_RS03655 0.81 -0.3 807,797 + DDA3937_RS03655 0.81 +0.2 807,798 - DDA3937_RS03655 0.82 -2.2 807,887 + +0.5 807,890 + -0.0 807,891 - +0.3 807,891 - +0.4 807,959 + -1.4 807,960 - +0.1
Or see this region's nucleotide sequence