Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03555

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03550 and DDA3937_RS03555 are separated by 101 nucleotidesDDA3937_RS03555 and DDA3937_RS03560 overlap by 14 nucleotides DDA3937_RS03550: DDA3937_RS03550 - fructuronate reductase, at 780,953 to 782,449 _RS03550 DDA3937_RS03555: DDA3937_RS03555 - DHA2 family efflux MFS transporter permease subunit, at 782,551 to 784,155 _RS03555 DDA3937_RS03560: DDA3937_RS03560 - HlyD family secretion protein, at 784,142 to 785,278 _RS03560 Position (kb) 782 783 784 785Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 781.630 kb on + strand, within DDA3937_RS03550at 781.630 kb on + strand, within DDA3937_RS03550at 781.631 kb on - strand, within DDA3937_RS03550at 781.631 kb on - strand, within DDA3937_RS03550at 781.631 kb on - strandat 781.637 kb on + strand, within DDA3937_RS03550at 781.637 kb on + strand, within DDA3937_RS03550at 781.637 kb on + strand, within DDA3937_RS03550at 781.637 kb on + strand, within DDA3937_RS03550at 781.637 kb on + strand, within DDA3937_RS03550at 781.638 kb on - strand, within DDA3937_RS03550at 781.638 kb on - strand, within DDA3937_RS03550at 781.638 kb on - strandat 781.638 kb on - strand, within DDA3937_RS03550at 781.638 kb on - strand, within DDA3937_RS03550at 781.638 kb on - strand, within DDA3937_RS03550at 781.638 kb on - strand, within DDA3937_RS03550at 782.044 kb on + strand, within DDA3937_RS03550at 782.045 kb on - strand, within DDA3937_RS03550at 782.186 kb on - strand, within DDA3937_RS03550at 782.336 kb on - strandat 782.449 kb on + strandat 782.449 kb on + strandat 782.449 kb on + strandat 782.449 kb on + strandat 782.449 kb on + strandat 782.449 kb on + strandat 782.449 kb on + strandat 782.450 kb on - strandat 782.450 kb on - strandat 782.450 kb on - strandat 782.450 kb on - strandat 782.630 kb on - strandat 782.717 kb on + strand, within DDA3937_RS03555at 782.718 kb on - strand, within DDA3937_RS03555at 782.746 kb on - strand, within DDA3937_RS03555at 782.746 kb on - strand, within DDA3937_RS03555at 782.748 kb on + strand, within DDA3937_RS03555at 782.749 kb on - strand, within DDA3937_RS03555at 782.749 kb on - strand, within DDA3937_RS03555at 782.884 kb on - strand, within DDA3937_RS03555at 782.887 kb on + strand, within DDA3937_RS03555at 782.887 kb on + strand, within DDA3937_RS03555at 782.887 kb on + strand, within DDA3937_RS03555at 783.181 kb on + strand, within DDA3937_RS03555at 783.181 kb on + strand, within DDA3937_RS03555at 783.181 kb on + strand, within DDA3937_RS03555at 783.182 kb on - strand, within DDA3937_RS03555at 783.182 kb on - strand, within DDA3937_RS03555at 783.182 kb on - strand, within DDA3937_RS03555at 783.240 kb on - strand, within DDA3937_RS03555at 783.263 kb on - strand, within DDA3937_RS03555at 783.271 kb on + strand, within DDA3937_RS03555at 783.275 kb on + strand, within DDA3937_RS03555at 783.275 kb on + strand, within DDA3937_RS03555at 783.275 kb on + strand, within DDA3937_RS03555at 783.275 kb on + strand, within DDA3937_RS03555at 783.275 kb on + strand, within DDA3937_RS03555at 783.275 kb on + strand, within DDA3937_RS03555at 783.276 kb on - strand, within DDA3937_RS03555at 783.276 kb on - strand, within DDA3937_RS03555at 783.276 kb on - strand, within DDA3937_RS03555at 783.276 kb on - strand, within DDA3937_RS03555at 783.287 kb on + strand, within DDA3937_RS03555at 783.288 kb on - strand, within DDA3937_RS03555at 783.288 kb on - strand, within DDA3937_RS03555at 783.520 kb on - strand, within DDA3937_RS03555at 783.520 kb on - strand, within DDA3937_RS03555at 783.717 kb on - strand, within DDA3937_RS03555at 783.717 kb on - strand, within DDA3937_RS03555at 783.717 kb on - strand, within DDA3937_RS03555at 783.765 kb on + strand, within DDA3937_RS03555at 783.765 kb on + strand, within DDA3937_RS03555at 783.765 kb on + strand, within DDA3937_RS03555at 783.765 kb on + strand, within DDA3937_RS03555at 783.765 kb on + strandat 783.765 kb on + strand, within DDA3937_RS03555at 783.766 kb on - strand, within DDA3937_RS03555at 783.766 kb on - strand, within DDA3937_RS03555at 783.899 kb on + strand, within DDA3937_RS03555at 783.899 kb on + strand, within DDA3937_RS03555at 783.899 kb on + strand, within DDA3937_RS03555at 783.899 kb on + strand, within DDA3937_RS03555at 783.899 kb on + strand, within DDA3937_RS03555at 783.899 kb on + strand, within DDA3937_RS03555at 783.899 kb on + strand, within DDA3937_RS03555at 783.900 kb on - strand, within DDA3937_RS03555at 783.900 kb on - strand, within DDA3937_RS03555at 783.900 kb on - strand, within DDA3937_RS03555at 783.900 kb on - strand, within DDA3937_RS03555at 783.900 kb on - strand, within DDA3937_RS03555at 783.900 kb on - strand, within DDA3937_RS03555at 783.900 kb on - strand, within DDA3937_RS03555at 783.900 kb on - strand, within DDA3937_RS03555at 783.900 kb on - strand, within DDA3937_RS03555at 783.900 kb on - strand, within DDA3937_RS03555at 784.375 kb on + strand, within DDA3937_RS03560at 784.376 kb on - strand, within DDA3937_RS03560at 784.376 kb on - strand, within DDA3937_RS03560at 784.376 kb on - strand, within DDA3937_RS03560at 784.376 kb on - strand, within DDA3937_RS03560at 784.376 kb on - strandat 784.379 kb on + strand, within DDA3937_RS03560at 784.380 kb on - strand, within DDA3937_RS03560at 784.488 kb on + strand, within DDA3937_RS03560at 784.488 kb on + strand, within DDA3937_RS03560at 784.488 kb on + strand, within DDA3937_RS03560at 784.488 kb on + strand, within DDA3937_RS03560at 784.488 kb on + strand, within DDA3937_RS03560at 784.489 kb on - strand, within DDA3937_RS03560at 784.489 kb on - strand, within DDA3937_RS03560at 784.489 kb on - strand, within DDA3937_RS03560at 784.589 kb on + strand, within DDA3937_RS03560at 784.589 kb on + strand, within DDA3937_RS03560at 784.730 kb on + strand, within DDA3937_RS03560at 784.731 kb on - strand, within DDA3937_RS03560at 784.731 kb on - strand, within DDA3937_RS03560at 784.762 kb on + strandat 784.763 kb on - strand, within DDA3937_RS03560at 784.810 kb on + strand, within DDA3937_RS03560at 784.810 kb on + strand, within DDA3937_RS03560at 784.938 kb on + strand, within DDA3937_RS03560at 784.938 kb on + strand, within DDA3937_RS03560at 784.938 kb on + strand, within DDA3937_RS03560at 784.939 kb on - strand, within DDA3937_RS03560at 785.140 kb on + strand, within DDA3937_RS03560at 785.146 kb on + strand, within DDA3937_RS03560at 785.147 kb on - strand, within DDA3937_RS03560at 785.147 kb on - strand, within DDA3937_RS03560

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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781,630 + DDA3937_RS03550 0.45 -0.4
781,630 + DDA3937_RS03550 0.45 -2.3
781,631 - DDA3937_RS03550 0.45 -1.2
781,631 - DDA3937_RS03550 0.45 +0.5
781,631 - +2.1
781,637 + DDA3937_RS03550 0.46 -1.2
781,637 + DDA3937_RS03550 0.46 -1.2
781,637 + DDA3937_RS03550 0.46 -1.1
781,637 + DDA3937_RS03550 0.46 -0.8
781,637 + DDA3937_RS03550 0.46 +4.1
781,638 - DDA3937_RS03550 0.46 -0.2
781,638 - DDA3937_RS03550 0.46 -0.4
781,638 - -0.2
781,638 - DDA3937_RS03550 0.46 -0.9
781,638 - DDA3937_RS03550 0.46 -1.0
781,638 - DDA3937_RS03550 0.46 -0.4
781,638 - DDA3937_RS03550 0.46 +0.5
782,044 + DDA3937_RS03550 0.73 -1.7
782,045 - DDA3937_RS03550 0.73 -1.0
782,186 - DDA3937_RS03550 0.82 -1.0
782,336 - -1.8
782,449 + -1.3
782,449 + -1.2
782,449 + +1.4
782,449 + -0.9
782,449 + +2.1
782,449 + +0.5
782,449 + -1.1
782,450 - +1.1
782,450 - +0.2
782,450 - +0.3
782,450 - -1.0
782,630 - -1.1
782,717 + DDA3937_RS03555 0.10 -2.0
782,718 - DDA3937_RS03555 0.10 -0.2
782,746 - DDA3937_RS03555 0.12 -0.6
782,746 - DDA3937_RS03555 0.12 -0.6
782,748 + DDA3937_RS03555 0.12 +0.5
782,749 - DDA3937_RS03555 0.12 -1.6
782,749 - DDA3937_RS03555 0.12 -0.1
782,884 - DDA3937_RS03555 0.21 +0.5
782,887 + DDA3937_RS03555 0.21 +0.3
782,887 + DDA3937_RS03555 0.21 -1.1
782,887 + DDA3937_RS03555 0.21 +0.9
783,181 + DDA3937_RS03555 0.39 +0.1
783,181 + DDA3937_RS03555 0.39 +1.1
783,181 + DDA3937_RS03555 0.39 -0.9
783,182 - DDA3937_RS03555 0.39 -0.7
783,182 - DDA3937_RS03555 0.39 -0.8
783,182 - DDA3937_RS03555 0.39 -2.1
783,240 - DDA3937_RS03555 0.43 -1.1
783,263 - DDA3937_RS03555 0.44 -1.4
783,271 + DDA3937_RS03555 0.45 +0.8
783,275 + DDA3937_RS03555 0.45 -2.3
783,275 + DDA3937_RS03555 0.45 +0.3
783,275 + DDA3937_RS03555 0.45 -1.0
783,275 + DDA3937_RS03555 0.45 +0.1
783,275 + DDA3937_RS03555 0.45 -1.0
783,275 + DDA3937_RS03555 0.45 +0.8
783,276 - DDA3937_RS03555 0.45 +0.3
783,276 - DDA3937_RS03555 0.45 -0.5
783,276 - DDA3937_RS03555 0.45 -1.3
783,276 - DDA3937_RS03555 0.45 -0.3
783,287 + DDA3937_RS03555 0.46 +0.0
783,288 - DDA3937_RS03555 0.46 -0.6
783,288 - DDA3937_RS03555 0.46 -1.3
783,520 - DDA3937_RS03555 0.60 -0.5
783,520 - DDA3937_RS03555 0.60 -1.5
783,717 - DDA3937_RS03555 0.73 +1.1
783,717 - DDA3937_RS03555 0.73 -0.5
783,717 - DDA3937_RS03555 0.73 +0.4
783,765 + DDA3937_RS03555 0.76 -1.4
783,765 + DDA3937_RS03555 0.76 -0.5
783,765 + DDA3937_RS03555 0.76 -0.8
783,765 + DDA3937_RS03555 0.76 +1.0
783,765 + +0.5
783,765 + DDA3937_RS03555 0.76 -0.1
783,766 - DDA3937_RS03555 0.76 +0.1
783,766 - DDA3937_RS03555 0.76 +0.8
783,899 + DDA3937_RS03555 0.84 +0.8
783,899 + DDA3937_RS03555 0.84 -0.2
783,899 + DDA3937_RS03555 0.84 -1.5
783,899 + DDA3937_RS03555 0.84 -0.9
783,899 + DDA3937_RS03555 0.84 +0.7
783,899 + DDA3937_RS03555 0.84 -1.7
783,899 + DDA3937_RS03555 0.84 -0.3
783,900 - DDA3937_RS03555 0.84 -0.9
783,900 - DDA3937_RS03555 0.84 -0.3
783,900 - DDA3937_RS03555 0.84 -0.7
783,900 - DDA3937_RS03555 0.84 -2.4
783,900 - DDA3937_RS03555 0.84 -2.0
783,900 - DDA3937_RS03555 0.84 -0.3
783,900 - DDA3937_RS03555 0.84 -0.2
783,900 - DDA3937_RS03555 0.84 -0.6
783,900 - DDA3937_RS03555 0.84 -0.5
783,900 - DDA3937_RS03555 0.84 +0.9
784,375 + DDA3937_RS03560 0.20 +1.1
784,376 - DDA3937_RS03560 0.21 -1.5
784,376 - DDA3937_RS03560 0.21 -1.7
784,376 - DDA3937_RS03560 0.21 -0.7
784,376 - DDA3937_RS03560 0.21 -0.5
784,376 - +2.1
784,379 + DDA3937_RS03560 0.21 -0.3
784,380 - DDA3937_RS03560 0.21 -0.5
784,488 + DDA3937_RS03560 0.30 -0.7
784,488 + DDA3937_RS03560 0.30 -0.5
784,488 + DDA3937_RS03560 0.30 -0.3
784,488 + DDA3937_RS03560 0.30 +0.1
784,488 + DDA3937_RS03560 0.30 -0.9
784,489 - DDA3937_RS03560 0.31 -2.9
784,489 - DDA3937_RS03560 0.31 -0.4
784,489 - DDA3937_RS03560 0.31 -0.3
784,589 + DDA3937_RS03560 0.39 +0.1
784,589 + DDA3937_RS03560 0.39 -1.9
784,730 + DDA3937_RS03560 0.52 -0.9
784,731 - DDA3937_RS03560 0.52 -0.9
784,731 - DDA3937_RS03560 0.52 -1.8
784,762 + +0.5
784,763 - DDA3937_RS03560 0.55 +1.6
784,810 + DDA3937_RS03560 0.59 -1.0
784,810 + DDA3937_RS03560 0.59 -0.2
784,938 + DDA3937_RS03560 0.70 -0.6
784,938 + DDA3937_RS03560 0.70 +0.1
784,938 + DDA3937_RS03560 0.70 -0.9
784,939 - DDA3937_RS03560 0.70 +0.0
785,140 + DDA3937_RS03560 0.88 +1.8
785,146 + DDA3937_RS03560 0.88 -0.5
785,147 - DDA3937_RS03560 0.88 +0.5
785,147 - DDA3937_RS03560 0.88 +1.2

Or see this region's nucleotide sequence