Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03380 and DDA3937_RS03385 overlap by 4 nucleotides DDA3937_RS03385 and DDA3937_RS03390 overlap by 17 nucleotides
DDA3937_RS03380: DDA3937_RS03380 - efflux RND transporter permease subunit, at 737,744 to 740,824
_RS03380
DDA3937_RS03385: DDA3937_RS03385 - heavy metal response regulator transcription factor, at 740,821 to 741,522
_RS03385
DDA3937_RS03390: DDA3937_RS03390 - heavy metal sensor histidine kinase, at 741,506 to 742,930
_RS03390
Position (kb) 740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 739.928 kb on + strand, within DDA3937_RS03380 at 739.929 kb on - strand, within DDA3937_RS03380 at 739.960 kb on + strand, within DDA3937_RS03380 at 739.960 kb on + strand, within DDA3937_RS03380 at 739.960 kb on + strand, within DDA3937_RS03380 at 739.961 kb on - strand, within DDA3937_RS03380 at 739.961 kb on - strand, within DDA3937_RS03380 at 739.964 kb on + strand, within DDA3937_RS03380 at 739.964 kb on + strand, within DDA3937_RS03380 at 739.964 kb on + strand, within DDA3937_RS03380 at 739.982 kb on + strand, within DDA3937_RS03380 at 739.982 kb on + strand, within DDA3937_RS03380 at 739.982 kb on + strand, within DDA3937_RS03380 at 739.982 kb on + strand, within DDA3937_RS03380 at 739.983 kb on - strand, within DDA3937_RS03380 at 739.983 kb on - strand, within DDA3937_RS03380 at 739.983 kb on - strand, within DDA3937_RS03380 at 739.983 kb on - strand, within DDA3937_RS03380 at 739.983 kb on - strand, within DDA3937_RS03380 at 740.045 kb on + strand, within DDA3937_RS03380 at 740.045 kb on + strand, within DDA3937_RS03380 at 740.045 kb on + strand, within DDA3937_RS03380 at 740.045 kb on + strand, within DDA3937_RS03380 at 740.045 kb on + strand, within DDA3937_RS03380 at 740.045 kb on + strand, within DDA3937_RS03380 at 740.239 kb on + strand, within DDA3937_RS03380 at 740.240 kb on - strand, within DDA3937_RS03380 at 740.240 kb on - strand at 740.258 kb on + strand, within DDA3937_RS03380 at 740.259 kb on - strand, within DDA3937_RS03380 at 740.336 kb on + strand, within DDA3937_RS03380 at 740.337 kb on - strand, within DDA3937_RS03380 at 740.352 kb on + strand, within DDA3937_RS03380 at 740.353 kb on - strand, within DDA3937_RS03380 at 740.357 kb on + strand, within DDA3937_RS03380 at 740.357 kb on + strand, within DDA3937_RS03380 at 740.358 kb on - strand, within DDA3937_RS03380 at 740.358 kb on - strand, within DDA3937_RS03380 at 740.358 kb on - strand, within DDA3937_RS03380 at 740.358 kb on - strand, within DDA3937_RS03380 at 740.358 kb on - strand, within DDA3937_RS03380 at 740.384 kb on - strand, within DDA3937_RS03380 at 740.384 kb on - strand, within DDA3937_RS03380 at 740.459 kb on - strand, within DDA3937_RS03380 at 740.545 kb on + strand at 740.546 kb on - strand at 740.608 kb on + strand at 740.735 kb on - strand at 740.743 kb on + strand at 740.744 kb on - strand at 740.744 kb on - strand at 740.744 kb on - strand at 740.744 kb on - strand at 740.744 kb on - strand at 740.760 kb on - strand at 740.760 kb on - strand at 740.828 kb on + strand at 740.829 kb on - strand at 740.829 kb on - strand at 740.829 kb on - strand at 740.837 kb on + strand at 740.837 kb on + strand at 740.837 kb on + strand at 740.838 kb on - strand at 740.863 kb on + strand at 740.863 kb on + strand at 740.864 kb on - strand at 740.864 kb on - strand at 740.935 kb on + strand, within DDA3937_RS03385 at 740.935 kb on + strand, within DDA3937_RS03385 at 740.935 kb on + strand, within DDA3937_RS03385 at 740.936 kb on - strand, within DDA3937_RS03385 at 740.936 kb on - strand, within DDA3937_RS03385 at 740.936 kb on - strand, within DDA3937_RS03385 at 740.936 kb on - strand, within DDA3937_RS03385 at 740.936 kb on - strand, within DDA3937_RS03385 at 740.953 kb on + strand, within DDA3937_RS03385 at 740.953 kb on + strand, within DDA3937_RS03385 at 740.989 kb on - strand, within DDA3937_RS03385 at 741.071 kb on + strand, within DDA3937_RS03385 at 741.072 kb on - strand, within DDA3937_RS03385 at 741.112 kb on + strand, within DDA3937_RS03385 at 741.113 kb on - strand, within DDA3937_RS03385 at 741.113 kb on - strand, within DDA3937_RS03385 at 741.183 kb on - strand, within DDA3937_RS03385 at 741.186 kb on + strand, within DDA3937_RS03385 at 741.186 kb on + strand, within DDA3937_RS03385 at 741.186 kb on + strand, within DDA3937_RS03385 at 741.187 kb on - strand, within DDA3937_RS03385 at 741.187 kb on - strand, within DDA3937_RS03385 at 741.187 kb on - strand, within DDA3937_RS03385 at 741.187 kb on - strand, within DDA3937_RS03385 at 741.445 kb on + strand, within DDA3937_RS03385 at 741.445 kb on + strand, within DDA3937_RS03385 at 741.445 kb on + strand, within DDA3937_RS03385 at 741.446 kb on - strand, within DDA3937_RS03385 at 741.446 kb on - strand, within DDA3937_RS03385 at 741.446 kb on - strand, within DDA3937_RS03385 at 741.446 kb on - strand, within DDA3937_RS03385 at 741.521 kb on - strand at 741.581 kb on + strand at 741.581 kb on + strand at 741.582 kb on - strand at 741.602 kb on + strand at 741.602 kb on + strand at 741.602 kb on + strand at 741.602 kb on + strand at 741.602 kb on + strand at 741.603 kb on - strand at 741.603 kb on - strand at 741.626 kb on - strand at 741.655 kb on + strand, within DDA3937_RS03390 at 741.655 kb on + strand, within DDA3937_RS03390 at 741.655 kb on + strand, within DDA3937_RS03390 at 741.655 kb on + strand, within DDA3937_RS03390 at 741.656 kb on - strand, within DDA3937_RS03390 at 741.814 kb on + strand, within DDA3937_RS03390 at 741.814 kb on + strand, within DDA3937_RS03390 at 741.905 kb on + strand, within DDA3937_RS03390 at 741.906 kb on - strand, within DDA3937_RS03390 at 741.969 kb on + strand, within DDA3937_RS03390 at 741.970 kb on - strand, within DDA3937_RS03390 at 742.079 kb on - strand, within DDA3937_RS03390 at 742.123 kb on + strand, within DDA3937_RS03390 at 742.124 kb on - strand, within DDA3937_RS03390 at 742.124 kb on - strand, within DDA3937_RS03390 at 742.183 kb on + strand, within DDA3937_RS03390 at 742.184 kb on - strand, within DDA3937_RS03390 at 742.184 kb on - strand, within DDA3937_RS03390 at 742.235 kb on - strand, within DDA3937_RS03390 at 742.347 kb on - strand, within DDA3937_RS03390 at 742.347 kb on - strand, within DDA3937_RS03390 at 742.371 kb on + strand, within DDA3937_RS03390 at 742.371 kb on + strand, within DDA3937_RS03390 at 742.372 kb on - strand, within DDA3937_RS03390 at 742.372 kb on - strand, within DDA3937_RS03390
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 739,928 + DDA3937_RS03380 0.71 -0.3 739,929 - DDA3937_RS03380 0.71 +0.3 739,960 + DDA3937_RS03380 0.72 -0.2 739,960 + DDA3937_RS03380 0.72 -1.4 739,960 + DDA3937_RS03380 0.72 -1.0 739,961 - DDA3937_RS03380 0.72 +1.2 739,961 - DDA3937_RS03380 0.72 -0.4 739,964 + DDA3937_RS03380 0.72 -1.2 739,964 + DDA3937_RS03380 0.72 -1.0 739,964 + DDA3937_RS03380 0.72 +1.3 739,982 + DDA3937_RS03380 0.73 -1.7 739,982 + DDA3937_RS03380 0.73 +2.9 739,982 + DDA3937_RS03380 0.73 +0.8 739,982 + DDA3937_RS03380 0.73 +1.2 739,983 - DDA3937_RS03380 0.73 +0.7 739,983 - DDA3937_RS03380 0.73 -2.2 739,983 - DDA3937_RS03380 0.73 -1.3 739,983 - DDA3937_RS03380 0.73 -0.9 739,983 - DDA3937_RS03380 0.73 -0.2 740,045 + DDA3937_RS03380 0.75 -0.2 740,045 + DDA3937_RS03380 0.75 +0.2 740,045 + DDA3937_RS03380 0.75 -0.2 740,045 + DDA3937_RS03380 0.75 +0.0 740,045 + DDA3937_RS03380 0.75 -0.0 740,045 + DDA3937_RS03380 0.75 -0.7 740,239 + DDA3937_RS03380 0.81 -1.1 740,240 - DDA3937_RS03380 0.81 +2.2 740,240 - +1.6 740,258 + DDA3937_RS03380 0.82 -0.8 740,259 - DDA3937_RS03380 0.82 -0.4 740,336 + DDA3937_RS03380 0.84 -0.2 740,337 - DDA3937_RS03380 0.84 +1.2 740,352 + DDA3937_RS03380 0.85 +0.3 740,353 - DDA3937_RS03380 0.85 +0.7 740,357 + DDA3937_RS03380 0.85 -0.3 740,357 + DDA3937_RS03380 0.85 -1.0 740,358 - DDA3937_RS03380 0.85 -0.0 740,358 - DDA3937_RS03380 0.85 -0.8 740,358 - DDA3937_RS03380 0.85 +0.8 740,358 - DDA3937_RS03380 0.85 -1.5 740,358 - DDA3937_RS03380 0.85 -1.0 740,384 - DDA3937_RS03380 0.86 -1.9 740,384 - DDA3937_RS03380 0.86 +0.9 740,459 - DDA3937_RS03380 0.88 -0.8 740,545 + +0.3 740,546 - -0.5 740,608 + +0.3 740,735 - -1.3 740,743 + +1.2 740,744 - -1.0 740,744 - -0.8 740,744 - +2.9 740,744 - -1.0 740,744 - -0.2 740,760 - -0.4 740,760 - -1.2 740,828 + +1.6 740,829 - +0.7 740,829 - -1.5 740,829 - -0.7 740,837 + -1.3 740,837 + +0.1 740,837 + +0.1 740,838 - -0.7 740,863 + +2.2 740,863 + -0.3 740,864 - -3.0 740,864 - +0.2 740,935 + DDA3937_RS03385 0.16 -1.0 740,935 + DDA3937_RS03385 0.16 -0.2 740,935 + DDA3937_RS03385 0.16 +0.5 740,936 - DDA3937_RS03385 0.16 -0.8 740,936 - DDA3937_RS03385 0.16 +0.3 740,936 - DDA3937_RS03385 0.16 +0.2 740,936 - DDA3937_RS03385 0.16 +0.1 740,936 - DDA3937_RS03385 0.16 -0.4 740,953 + DDA3937_RS03385 0.19 -0.1 740,953 + DDA3937_RS03385 0.19 -0.8 740,989 - DDA3937_RS03385 0.24 -0.9 741,071 + DDA3937_RS03385 0.36 +0.8 741,072 - DDA3937_RS03385 0.36 +1.2 741,112 + DDA3937_RS03385 0.41 -1.8 741,113 - DDA3937_RS03385 0.42 -1.4 741,113 - DDA3937_RS03385 0.42 -3.3 741,183 - DDA3937_RS03385 0.52 +0.0 741,186 + DDA3937_RS03385 0.52 -2.5 741,186 + DDA3937_RS03385 0.52 -0.0 741,186 + DDA3937_RS03385 0.52 -1.0 741,187 - DDA3937_RS03385 0.52 -1.0 741,187 - DDA3937_RS03385 0.52 -0.5 741,187 - DDA3937_RS03385 0.52 -0.8 741,187 - DDA3937_RS03385 0.52 -0.3 741,445 + DDA3937_RS03385 0.89 -1.8 741,445 + DDA3937_RS03385 0.89 -1.1 741,445 + DDA3937_RS03385 0.89 -1.7 741,446 - DDA3937_RS03385 0.89 -0.4 741,446 - DDA3937_RS03385 0.89 -0.6 741,446 - DDA3937_RS03385 0.89 -1.4 741,446 - DDA3937_RS03385 0.89 +1.3 741,521 - +0.5 741,581 + +0.6 741,581 + -0.2 741,582 - +1.6 741,602 + -1.8 741,602 + -0.0 741,602 + +0.2 741,602 + +0.6 741,602 + -0.4 741,603 - -0.7 741,603 - +0.9 741,626 - -0.6 741,655 + DDA3937_RS03390 0.10 -0.9 741,655 + DDA3937_RS03390 0.10 +0.2 741,655 + DDA3937_RS03390 0.10 +0.3 741,655 + DDA3937_RS03390 0.10 -2.0 741,656 - DDA3937_RS03390 0.11 -0.4 741,814 + DDA3937_RS03390 0.22 +1.8 741,814 + DDA3937_RS03390 0.22 +1.6 741,905 + DDA3937_RS03390 0.28 +0.2 741,906 - DDA3937_RS03390 0.28 +1.7 741,969 + DDA3937_RS03390 0.32 -1.3 741,970 - DDA3937_RS03390 0.33 +0.7 742,079 - DDA3937_RS03390 0.40 -1.8 742,123 + DDA3937_RS03390 0.43 -0.3 742,124 - DDA3937_RS03390 0.43 -1.0 742,124 - DDA3937_RS03390 0.43 -0.3 742,183 + DDA3937_RS03390 0.48 +1.2 742,184 - DDA3937_RS03390 0.48 -1.7 742,184 - DDA3937_RS03390 0.48 -0.6 742,235 - DDA3937_RS03390 0.51 -0.2 742,347 - DDA3937_RS03390 0.59 -1.9 742,347 - DDA3937_RS03390 0.59 -0.4 742,371 + DDA3937_RS03390 0.61 +0.2 742,371 + DDA3937_RS03390 0.61 -1.4 742,372 - DDA3937_RS03390 0.61 -0.7 742,372 - DDA3937_RS03390 0.61 +1.0
Or see this region's nucleotide sequence