Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02965 and DDA3937_RS02970 are separated by 490 nucleotides DDA3937_RS02970 and DDA3937_RS21855 are separated by 70 nucleotides DDA3937_RS21855 and DDA3937_RS02975 are separated by 188 nucleotides
DDA3937_RS02965: DDA3937_RS02965 - transcriptional regulator ArgR, at 657,055 to 657,525
_RS02965
DDA3937_RS02970: DDA3937_RS02970 - malate dehydrogenase, at 658,016 to 658,957
_RS02970
DDA3937_RS21855: DDA3937_RS21855 - helix-turn-helix domain-containing protein, at 659,028 to 659,309
_RS21855
DDA3937_RS02975: DDA3937_RS02975 - putative DNA-binding transcriptional regulator, at 659,498 to 659,884
_RS02975
Position (kb) 658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 657.019 kb on + strand at 657.020 kb on - strand at 657.056 kb on + strand at 657.056 kb on + strand at 657.056 kb on + strand at 657.056 kb on + strand at 657.057 kb on - strand at 657.057 kb on - strand at 657.057 kb on - strand at 657.076 kb on + strand at 657.077 kb on - strand at 657.082 kb on + strand at 657.083 kb on - strand at 657.092 kb on + strand at 657.092 kb on + strand at 657.092 kb on + strand at 657.092 kb on + strand at 657.093 kb on - strand at 657.093 kb on - strand at 657.093 kb on - strand at 657.093 kb on - strand at 657.093 kb on - strand at 657.255 kb on - strand, within DDA3937_RS02965 at 657.255 kb on - strand, within DDA3937_RS02965 at 657.255 kb on - strand, within DDA3937_RS02965 at 657.289 kb on - strand, within DDA3937_RS02965 at 657.292 kb on - strand, within DDA3937_RS02965 at 657.327 kb on - strand at 657.327 kb on - strand, within DDA3937_RS02965 at 657.514 kb on - strand at 657.519 kb on + strand at 657.519 kb on + strand at 657.520 kb on - strand at 657.549 kb on + strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.655 kb on + strand at 657.655 kb on + strand at 657.655 kb on + strand at 657.655 kb on + strand at 657.656 kb on - strand at 657.656 kb on - strand at 657.661 kb on - strand at 657.694 kb on + strand at 657.695 kb on - strand at 657.706 kb on - strand at 657.749 kb on + strand at 657.749 kb on + strand at 657.749 kb on + strand at 657.749 kb on + strand at 657.749 kb on + strand at 657.750 kb on - strand at 657.750 kb on - strand at 657.750 kb on - strand at 657.750 kb on - strand at 657.750 kb on - strand at 657.754 kb on + strand at 657.754 kb on + strand at 657.754 kb on + strand at 657.755 kb on - strand at 657.755 kb on - strand at 657.755 kb on - strand at 657.783 kb on - strand at 657.783 kb on - strand at 657.810 kb on + strand at 657.811 kb on - strand at 657.815 kb on + strand at 657.815 kb on + strand at 657.815 kb on + strand at 657.816 kb on - strand at 657.819 kb on + strand at 657.819 kb on + strand at 657.845 kb on + strand at 657.846 kb on - strand at 657.846 kb on - strand at 657.846 kb on - strand at 657.851 kb on - strand at 657.853 kb on + strand at 657.856 kb on + strand at 657.864 kb on + strand at 657.865 kb on - strand at 657.865 kb on - strand at 657.865 kb on - strand at 657.904 kb on + strand at 657.904 kb on + strand at 657.904 kb on + strand at 657.904 kb on + strand at 657.904 kb on + strand at 657.904 kb on + strand at 657.905 kb on - strand at 657.905 kb on - strand at 657.905 kb on - strand at 657.905 kb on - strand at 657.905 kb on - strand at 657.908 kb on + strand at 657.908 kb on + strand at 657.908 kb on + strand at 657.908 kb on + strand at 657.908 kb on + strand at 657.908 kb on + strand at 657.908 kb on + strand at 657.909 kb on - strand at 657.909 kb on - strand at 657.909 kb on - strand at 657.909 kb on - strand at 657.956 kb on + strand at 657.957 kb on - strand at 658.000 kb on + strand at 658.000 kb on + strand at 658.000 kb on + strand at 658.000 kb on + strand at 658.000 kb on + strand at 658.003 kb on + strand at 658.233 kb on + strand, within DDA3937_RS02970 at 658.233 kb on + strand at 658.426 kb on - strand, within DDA3937_RS02970 at 658.955 kb on + strand at 658.955 kb on + strand at 658.956 kb on - strand at 658.956 kb on - strand at 658.977 kb on - strand at 658.977 kb on - strand at 658.985 kb on + strand at 658.986 kb on - strand at 658.996 kb on + strand at 658.996 kb on + strand at 658.996 kb on + strand at 658.997 kb on - strand at 658.998 kb on + strand at 658.998 kb on + strand at 658.998 kb on + strand at 658.999 kb on - strand at 659.079 kb on + strand, within DDA3937_RS21855 at 659.079 kb on + strand, within DDA3937_RS21855 at 659.079 kb on + strand, within DDA3937_RS21855 at 659.079 kb on + strand, within DDA3937_RS21855 at 659.101 kb on + strand, within DDA3937_RS21855 at 659.101 kb on + strand, within DDA3937_RS21855 at 659.101 kb on + strand, within DDA3937_RS21855 at 659.102 kb on - strand, within DDA3937_RS21855 at 659.118 kb on + strand, within DDA3937_RS21855 at 659.151 kb on + strand, within DDA3937_RS21855 at 659.151 kb on + strand, within DDA3937_RS21855 at 659.151 kb on + strand, within DDA3937_RS21855 at 659.151 kb on + strand, within DDA3937_RS21855 at 659.151 kb on + strand, within DDA3937_RS21855 at 659.152 kb on - strand, within DDA3937_RS21855 at 659.152 kb on - strand, within DDA3937_RS21855 at 659.152 kb on - strand, within DDA3937_RS21855 at 659.152 kb on - strand, within DDA3937_RS21855 at 659.271 kb on - strand, within DDA3937_RS21855 at 659.273 kb on + strand, within DDA3937_RS21855 at 659.274 kb on - strand, within DDA3937_RS21855 at 659.309 kb on + strand at 659.309 kb on + strand at 659.310 kb on - strand at 659.310 kb on - strand at 659.321 kb on + strand at 659.321 kb on + strand at 659.322 kb on - strand at 659.328 kb on - strand at 659.328 kb on - strand at 659.330 kb on + strand at 659.330 kb on + strand at 659.331 kb on - strand at 659.343 kb on + strand at 659.344 kb on - strand at 659.344 kb on - strand at 659.344 kb on - strand at 659.344 kb on - strand at 659.344 kb on - strand at 659.344 kb on - strand at 659.344 kb on - strand at 659.347 kb on - strand at 659.347 kb on - strand at 659.352 kb on + strand at 659.352 kb on + strand at 659.352 kb on + strand at 659.353 kb on - strand at 659.353 kb on - strand at 659.353 kb on - strand at 659.354 kb on + strand at 659.354 kb on + strand at 659.354 kb on + strand at 659.354 kb on + strand at 659.354 kb on + strand at 659.355 kb on - strand at 659.355 kb on - strand at 659.355 kb on - strand at 659.355 kb on - strand at 659.355 kb on - strand at 659.355 kb on - strand at 659.355 kb on - strand at 659.355 kb on - strand at 659.355 kb on - strand at 659.358 kb on + strand at 659.359 kb on - strand at 659.359 kb on - strand at 659.475 kb on - strand at 659.475 kb on - strand at 659.573 kb on - strand, within DDA3937_RS02975 at 659.619 kb on + strand, within DDA3937_RS02975 at 659.619 kb on + strand, within DDA3937_RS02975 at 659.619 kb on + strand, within DDA3937_RS02975 at 659.620 kb on - strand, within DDA3937_RS02975 at 659.634 kb on + strand, within DDA3937_RS02975 at 659.640 kb on - strand, within DDA3937_RS02975 at 659.640 kb on - strand, within DDA3937_RS02975 at 659.645 kb on - strand, within DDA3937_RS02975 at 659.650 kb on + strand, within DDA3937_RS02975 at 659.650 kb on + strand, within DDA3937_RS02975 at 659.650 kb on + strand, within DDA3937_RS02975 at 659.650 kb on + strand, within DDA3937_RS02975 at 659.651 kb on - strand, within DDA3937_RS02975 at 659.651 kb on - strand, within DDA3937_RS02975 at 659.751 kb on - strand, within DDA3937_RS02975 at 659.751 kb on - strand, within DDA3937_RS02975 at 659.760 kb on + strand, within DDA3937_RS02975 at 659.760 kb on + strand, within DDA3937_RS02975 at 659.760 kb on + strand, within DDA3937_RS02975 at 659.760 kb on + strand, within DDA3937_RS02975 at 659.760 kb on + strand, within DDA3937_RS02975 at 659.760 kb on + strand, within DDA3937_RS02975 at 659.761 kb on - strand, within DDA3937_RS02975 at 659.761 kb on - strand, within DDA3937_RS02975 at 659.761 kb on - strand, within DDA3937_RS02975 at 659.761 kb on - strand, within DDA3937_RS02975 at 659.761 kb on - strand, within DDA3937_RS02975 at 659.792 kb on + strand, within DDA3937_RS02975 at 659.792 kb on + strand, within DDA3937_RS02975 at 659.792 kb on + strand, within DDA3937_RS02975 at 659.792 kb on + strand, within DDA3937_RS02975 at 659.792 kb on + strand, within DDA3937_RS02975 at 659.792 kb on + strand, within DDA3937_RS02975 at 659.792 kb on + strand, within DDA3937_RS02975 at 659.793 kb on - strand, within DDA3937_RS02975 at 659.793 kb on - strand, within DDA3937_RS02975 at 659.793 kb on - strand, within DDA3937_RS02975 at 659.793 kb on - strand, within DDA3937_RS02975 at 659.794 kb on + strand, within DDA3937_RS02975 at 659.794 kb on + strand, within DDA3937_RS02975 at 659.795 kb on - strand, within DDA3937_RS02975 at 659.795 kb on - strand, within DDA3937_RS02975 at 659.882 kb on + strand at 659.883 kb on - strand at 659.883 kb on - strand at 659.883 kb on - strand at 659.883 kb on - strand at 659.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 657,019 + -0.6 657,020 - -0.8 657,056 + -1.1 657,056 + +0.4 657,056 + -0.2 657,056 + -0.4 657,057 - -0.1 657,057 - -0.1 657,057 - -0.8 657,076 + -1.5 657,077 - -1.3 657,082 + +2.0 657,083 - -1.0 657,092 + -1.7 657,092 + +1.2 657,092 + +1.2 657,092 + +0.2 657,093 - -1.4 657,093 - -1.3 657,093 - -0.4 657,093 - -1.1 657,093 - +0.0 657,255 - DDA3937_RS02965 0.42 -0.4 657,255 - DDA3937_RS02965 0.42 -0.8 657,255 - DDA3937_RS02965 0.42 -1.0 657,289 - DDA3937_RS02965 0.50 -0.7 657,292 - DDA3937_RS02965 0.50 -0.8 657,327 - +2.2 657,327 - DDA3937_RS02965 0.58 -0.6 657,514 - -1.6 657,519 + -1.5 657,519 + -0.6 657,520 - -0.4 657,549 + -1.6 657,550 - -3.7 657,550 - -0.4 657,550 - +0.2 657,550 - -0.2 657,655 + -0.4 657,655 + -0.5 657,655 + -0.9 657,655 + -0.7 657,656 - +0.2 657,656 - -1.6 657,661 - -0.3 657,694 + -1.4 657,695 - +0.6 657,706 - -1.0 657,749 + -2.5 657,749 + -0.1 657,749 + -0.3 657,749 + +0.1 657,749 + -1.7 657,750 - -1.4 657,750 - -1.4 657,750 - -0.3 657,750 - -1.9 657,750 - -1.4 657,754 + -1.5 657,754 + -1.1 657,754 + +0.1 657,755 - -2.0 657,755 - -0.6 657,755 - -0.4 657,783 - -1.0 657,783 - -0.6 657,810 + -0.5 657,811 - +1.6 657,815 + -0.6 657,815 + -0.5 657,815 + -0.3 657,816 - -2.1 657,819 + -1.4 657,819 + -1.9 657,845 + +0.1 657,846 - -2.1 657,846 - -0.3 657,846 - +0.7 657,851 - -1.4 657,853 + -0.6 657,856 + -0.4 657,864 + -0.2 657,865 - -1.4 657,865 - -0.8 657,865 - -0.8 657,904 + -0.9 657,904 + +0.6 657,904 + -1.6 657,904 + +0.6 657,904 + +0.6 657,904 + +1.3 657,905 - -1.6 657,905 - -1.0 657,905 - -0.2 657,905 - -0.5 657,905 - -1.6 657,908 + -0.9 657,908 + -0.8 657,908 + -0.1 657,908 + -1.6 657,908 + -1.1 657,908 + -0.4 657,908 + +2.2 657,909 - -0.6 657,909 - -0.7 657,909 - -0.6 657,909 - -0.1 657,956 + +1.2 657,957 - -0.6 658,000 + +0.0 658,000 + +0.8 658,000 + -2.7 658,000 + +0.0 658,000 + -0.7 658,003 + -0.6 658,233 + DDA3937_RS02970 0.23 -0.9 658,233 + +2.2 658,426 - DDA3937_RS02970 0.44 -0.1 658,955 + -0.2 658,955 + -1.3 658,956 - +0.9 658,956 - -0.0 658,977 - -0.9 658,977 - -2.2 658,985 + -1.5 658,986 - -0.6 658,996 + -0.1 658,996 + +0.6 658,996 + -0.2 658,997 - -0.5 658,998 + -1.7 658,998 + +0.4 658,998 + -1.7 658,999 - -2.0 659,079 + DDA3937_RS21855 0.18 -0.5 659,079 + DDA3937_RS21855 0.18 -0.5 659,079 + DDA3937_RS21855 0.18 -1.3 659,079 + DDA3937_RS21855 0.18 +0.5 659,101 + DDA3937_RS21855 0.26 -0.1 659,101 + DDA3937_RS21855 0.26 -0.7 659,101 + DDA3937_RS21855 0.26 +0.6 659,102 - DDA3937_RS21855 0.26 -1.0 659,118 + DDA3937_RS21855 0.32 -0.7 659,151 + DDA3937_RS21855 0.44 -0.1 659,151 + DDA3937_RS21855 0.44 -1.9 659,151 + DDA3937_RS21855 0.44 -0.4 659,151 + DDA3937_RS21855 0.44 -0.4 659,151 + DDA3937_RS21855 0.44 -3.2 659,152 - DDA3937_RS21855 0.44 +0.9 659,152 - DDA3937_RS21855 0.44 +0.8 659,152 - DDA3937_RS21855 0.44 +0.3 659,152 - DDA3937_RS21855 0.44 -0.1 659,271 - DDA3937_RS21855 0.86 -0.4 659,273 + DDA3937_RS21855 0.87 +0.2 659,274 - DDA3937_RS21855 0.87 -0.7 659,309 + +0.5 659,309 + -0.2 659,310 - -1.5 659,310 - -1.5 659,321 + -0.7 659,321 + +1.1 659,322 - +1.1 659,328 - -0.8 659,328 - +1.2 659,330 + -0.2 659,330 + -0.0 659,331 - +0.3 659,343 + +0.6 659,344 - -0.5 659,344 - +0.6 659,344 - -0.9 659,344 - +2.6 659,344 - -0.6 659,344 - +0.7 659,344 - -0.5 659,347 - +0.3 659,347 - +0.0 659,352 + -1.2 659,352 + +1.0 659,352 + +0.3 659,353 - -0.5 659,353 - -0.6 659,353 - -0.4 659,354 + -1.0 659,354 + -1.1 659,354 + +0.1 659,354 + +0.8 659,354 + -0.1 659,355 - -0.6 659,355 - +0.7 659,355 - +3.1 659,355 - -1.1 659,355 - +0.7 659,355 - +0.2 659,355 - -0.0 659,355 - -1.7 659,355 - -0.6 659,358 + -0.1 659,359 - +0.3 659,359 - +0.0 659,475 - +3.4 659,475 - +2.4 659,573 - DDA3937_RS02975 0.19 -0.4 659,619 + DDA3937_RS02975 0.31 -0.4 659,619 + DDA3937_RS02975 0.31 -0.4 659,619 + DDA3937_RS02975 0.31 -1.0 659,620 - DDA3937_RS02975 0.32 -0.8 659,634 + DDA3937_RS02975 0.35 -0.5 659,640 - DDA3937_RS02975 0.37 +0.1 659,640 - DDA3937_RS02975 0.37 -0.8 659,645 - DDA3937_RS02975 0.38 +0.9 659,650 + DDA3937_RS02975 0.39 -1.5 659,650 + DDA3937_RS02975 0.39 +0.4 659,650 + DDA3937_RS02975 0.39 -0.2 659,650 + DDA3937_RS02975 0.39 +0.5 659,651 - DDA3937_RS02975 0.40 +0.9 659,651 - DDA3937_RS02975 0.40 -1.0 659,751 - DDA3937_RS02975 0.65 -0.8 659,751 - DDA3937_RS02975 0.65 -2.9 659,760 + DDA3937_RS02975 0.68 +0.8 659,760 + DDA3937_RS02975 0.68 -0.4 659,760 + DDA3937_RS02975 0.68 -1.4 659,760 + DDA3937_RS02975 0.68 +0.6 659,760 + DDA3937_RS02975 0.68 -0.0 659,760 + DDA3937_RS02975 0.68 -1.9 659,761 - DDA3937_RS02975 0.68 -1.1 659,761 - DDA3937_RS02975 0.68 -0.3 659,761 - DDA3937_RS02975 0.68 -1.5 659,761 - DDA3937_RS02975 0.68 +0.0 659,761 - DDA3937_RS02975 0.68 -2.3 659,792 + DDA3937_RS02975 0.76 -0.8 659,792 + DDA3937_RS02975 0.76 -0.6 659,792 + DDA3937_RS02975 0.76 -0.2 659,792 + DDA3937_RS02975 0.76 -0.1 659,792 + DDA3937_RS02975 0.76 +0.2 659,792 + DDA3937_RS02975 0.76 +0.5 659,792 + DDA3937_RS02975 0.76 +1.0 659,793 - DDA3937_RS02975 0.76 -0.8 659,793 - DDA3937_RS02975 0.76 -2.4 659,793 - DDA3937_RS02975 0.76 +1.2 659,793 - DDA3937_RS02975 0.76 -1.8 659,794 + DDA3937_RS02975 0.76 -1.3 659,794 + DDA3937_RS02975 0.76 -1.6 659,795 - DDA3937_RS02975 0.77 -1.2 659,795 - DDA3937_RS02975 0.77 +2.0 659,882 + -1.4 659,883 - +0.3 659,883 - -1.4 659,883 - +0.3 659,883 - -2.0 659,883 - +0.2
Or see this region's nucleotide sequence