Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02835 and DDA3937_RS02840 are separated by 130 nucleotides DDA3937_RS02840 and DDA3937_RS02845 are separated by 45 nucleotides DDA3937_RS02845 and DDA3937_RS02850 are separated by 450 nucleotides
DDA3937_RS02835: DDA3937_RS02835 - altronate dehydratase, at 625,048 to 626,538
_RS02835
DDA3937_RS02840: DDA3937_RS02840 - YgjV family protein, at 626,669 to 627,214
_RS02840
DDA3937_RS02845: DDA3937_RS02845 - TerC family protein, at 627,260 to 628,213
_RS02845
DDA3937_RS02850: DDA3937_RS02850 - 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG, at 628,664 to 629,836
_RS02850
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 626.469 kb on + strand at 626.469 kb on + strand at 626.469 kb on + strand at 626.513 kb on + strand at 626.518 kb on - strand at 626.518 kb on - strand at 626.518 kb on - strand at 626.518 kb on - strand at 626.536 kb on + strand at 626.536 kb on + strand at 626.537 kb on - strand at 626.548 kb on + strand at 626.548 kb on + strand at 626.549 kb on - strand at 626.549 kb on - strand at 626.549 kb on - strand at 626.552 kb on - strand at 626.552 kb on - strand at 626.582 kb on - strand at 626.644 kb on + strand at 626.656 kb on + strand at 626.656 kb on + strand at 626.657 kb on - strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.678 kb on + strand at 626.679 kb on - strand at 626.679 kb on - strand at 626.679 kb on - strand at 626.679 kb on - strand at 626.679 kb on - strand at 626.679 kb on - strand at 626.703 kb on + strand at 626.858 kb on - strand, within DDA3937_RS02840 at 626.858 kb on - strand, within DDA3937_RS02840 at 626.905 kb on + strand, within DDA3937_RS02840 at 626.906 kb on - strand, within DDA3937_RS02840 at 626.906 kb on - strand, within DDA3937_RS02840 at 626.906 kb on - strand, within DDA3937_RS02840 at 626.906 kb on - strand at 626.979 kb on + strand, within DDA3937_RS02840 at 626.979 kb on + strand, within DDA3937_RS02840 at 626.979 kb on + strand, within DDA3937_RS02840 at 626.980 kb on - strand, within DDA3937_RS02840 at 626.980 kb on - strand, within DDA3937_RS02840 at 627.031 kb on + strand, within DDA3937_RS02840 at 627.060 kb on + strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.061 kb on - strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.064 kb on + strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.065 kb on - strand, within DDA3937_RS02840 at 627.128 kb on + strand, within DDA3937_RS02840 at 627.128 kb on + strand, within DDA3937_RS02840 at 627.129 kb on - strand, within DDA3937_RS02840 at 627.151 kb on + strand, within DDA3937_RS02840 at 627.414 kb on + strand, within DDA3937_RS02845 at 627.415 kb on - strand, within DDA3937_RS02845 at 627.459 kb on + strand, within DDA3937_RS02845 at 627.459 kb on + strand, within DDA3937_RS02845 at 627.460 kb on - strand, within DDA3937_RS02845 at 627.460 kb on - strand, within DDA3937_RS02845 at 627.460 kb on - strand, within DDA3937_RS02845 at 627.612 kb on + strand, within DDA3937_RS02845 at 627.613 kb on - strand, within DDA3937_RS02845 at 627.780 kb on + strand, within DDA3937_RS02845 at 627.781 kb on - strand, within DDA3937_RS02845 at 627.781 kb on - strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.832 kb on + strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.833 kb on - strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.835 kb on + strand, within DDA3937_RS02845 at 627.836 kb on - strand, within DDA3937_RS02845 at 627.836 kb on - strand, within DDA3937_RS02845 at 627.842 kb on + strand, within DDA3937_RS02845 at 627.843 kb on - strand, within DDA3937_RS02845 at 627.864 kb on + strand, within DDA3937_RS02845 at 627.864 kb on + strand, within DDA3937_RS02845 at 627.865 kb on - strand, within DDA3937_RS02845 at 627.906 kb on + strand, within DDA3937_RS02845 at 627.906 kb on + strand, within DDA3937_RS02845 at 628.029 kb on + strand, within DDA3937_RS02845 at 628.029 kb on + strand, within DDA3937_RS02845 at 628.029 kb on + strand, within DDA3937_RS02845 at 628.030 kb on - strand, within DDA3937_RS02845 at 628.030 kb on - strand, within DDA3937_RS02845 at 628.055 kb on + strand, within DDA3937_RS02845 at 628.134 kb on + strand at 628.156 kb on + strand at 628.156 kb on + strand at 628.156 kb on + strand at 628.156 kb on + strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.157 kb on - strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.202 kb on + strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.203 kb on - strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.204 kb on + strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.205 kb on - strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.208 kb on + strand at 628.209 kb on - strand at 628.209 kb on - strand at 628.213 kb on + strand at 628.213 kb on + strand at 628.214 kb on - strand at 628.214 kb on - strand at 628.214 kb on - strand at 628.219 kb on + strand at 628.220 kb on - strand at 628.220 kb on - strand at 628.309 kb on + strand at 628.310 kb on - strand at 628.312 kb on + strand at 628.313 kb on - strand at 628.313 kb on - strand at 628.323 kb on + strand at 628.323 kb on + strand at 628.324 kb on - strand at 628.352 kb on + strand at 628.352 kb on + strand at 628.352 kb on + strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.353 kb on - strand at 628.359 kb on + strand at 628.359 kb on + strand at 628.359 kb on + strand at 628.360 kb on - strand at 628.368 kb on + strand at 628.368 kb on + strand at 628.369 kb on - strand at 628.369 kb on - strand at 628.377 kb on + strand at 628.377 kb on + strand at 628.378 kb on - strand at 628.378 kb on - strand at 628.378 kb on - strand at 628.411 kb on + strand at 628.411 kb on + strand at 628.411 kb on + strand at 628.412 kb on - strand at 628.412 kb on - strand at 628.412 kb on - strand at 628.436 kb on + strand at 628.460 kb on + strand at 628.460 kb on + strand at 628.461 kb on - strand at 628.461 kb on - strand at 628.461 kb on - strand at 628.465 kb on + strand at 628.475 kb on - strand at 628.581 kb on - strand at 628.607 kb on - strand at 628.607 kb on - strand at 628.648 kb on + strand at 628.649 kb on - strand at 628.710 kb on - strand at 628.763 kb on + strand at 628.763 kb on + strand at 628.763 kb on + strand at 628.763 kb on + strand at 628.764 kb on - strand at 628.764 kb on - strand at 628.851 kb on + strand, within DDA3937_RS02850 at 628.851 kb on + strand, within DDA3937_RS02850 at 628.887 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.111 kb on - strand, within DDA3937_RS02850 at 629.155 kb on + strand, within DDA3937_RS02850
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 626,469 + -0.4 626,469 + -1.0 626,469 + -1.3 626,513 + +0.8 626,518 - -1.6 626,518 - -1.5 626,518 - -3.2 626,518 - -1.5 626,536 + +0.6 626,536 + +0.7 626,537 - +1.4 626,548 + -1.1 626,548 + -0.4 626,549 - -0.4 626,549 - -0.6 626,549 - +1.8 626,552 - -2.3 626,552 - -1.3 626,582 - +0.6 626,644 + -1.0 626,656 + +0.5 626,656 + -2.8 626,657 - +0.5 626,678 + -0.1 626,678 + -0.5 626,678 + +1.6 626,678 + +0.0 626,678 + -0.9 626,678 + -0.3 626,678 + +0.3 626,679 - +0.6 626,679 - -1.7 626,679 - -0.9 626,679 - +0.9 626,679 - +0.2 626,679 - -1.4 626,703 + +1.5 626,858 - DDA3937_RS02840 0.35 -2.7 626,858 - DDA3937_RS02840 0.35 +0.2 626,905 + DDA3937_RS02840 0.43 -0.6 626,906 - DDA3937_RS02840 0.43 -0.1 626,906 - DDA3937_RS02840 0.43 -1.2 626,906 - DDA3937_RS02840 0.43 -0.5 626,906 - +0.6 626,979 + DDA3937_RS02840 0.57 -1.2 626,979 + DDA3937_RS02840 0.57 -1.1 626,979 + DDA3937_RS02840 0.57 -0.9 626,980 - DDA3937_RS02840 0.57 -0.1 626,980 - DDA3937_RS02840 0.57 -1.1 627,031 + DDA3937_RS02840 0.66 -1.1 627,060 + DDA3937_RS02840 0.72 -2.6 627,061 - DDA3937_RS02840 0.72 -0.1 627,061 - DDA3937_RS02840 0.72 -1.8 627,061 - DDA3937_RS02840 0.72 +0.8 627,061 - DDA3937_RS02840 0.72 -2.3 627,061 - DDA3937_RS02840 0.72 -0.4 627,061 - DDA3937_RS02840 0.72 -1.0 627,064 + DDA3937_RS02840 0.72 -0.6 627,064 + DDA3937_RS02840 0.72 -0.3 627,064 + DDA3937_RS02840 0.72 -0.8 627,064 + DDA3937_RS02840 0.72 -0.9 627,064 + DDA3937_RS02840 0.72 -1.0 627,064 + DDA3937_RS02840 0.72 -0.8 627,064 + DDA3937_RS02840 0.72 -2.9 627,064 + DDA3937_RS02840 0.72 -0.4 627,064 + DDA3937_RS02840 0.72 -0.2 627,064 + DDA3937_RS02840 0.72 -0.8 627,064 + DDA3937_RS02840 0.72 -0.6 627,064 + DDA3937_RS02840 0.72 +0.8 627,064 + DDA3937_RS02840 0.72 +0.3 627,065 - DDA3937_RS02840 0.73 +0.0 627,065 - DDA3937_RS02840 0.73 -1.4 627,065 - DDA3937_RS02840 0.73 -0.4 627,065 - DDA3937_RS02840 0.73 -2.0 627,065 - DDA3937_RS02840 0.73 -0.7 627,065 - DDA3937_RS02840 0.73 +1.1 627,065 - DDA3937_RS02840 0.73 +1.0 627,065 - DDA3937_RS02840 0.73 -0.5 627,065 - DDA3937_RS02840 0.73 -0.9 627,065 - DDA3937_RS02840 0.73 +0.5 627,065 - DDA3937_RS02840 0.73 +0.4 627,065 - +1.2 627,065 - DDA3937_RS02840 0.73 +0.2 627,065 - DDA3937_RS02840 0.73 -2.0 627,065 - DDA3937_RS02840 0.73 -0.1 627,128 + DDA3937_RS02840 0.84 -0.5 627,128 + DDA3937_RS02840 0.84 -0.7 627,129 - DDA3937_RS02840 0.84 +0.7 627,151 + DDA3937_RS02840 0.88 +1.3 627,414 + DDA3937_RS02845 0.16 +0.2 627,415 - DDA3937_RS02845 0.16 +0.4 627,459 + DDA3937_RS02845 0.21 -0.6 627,459 + DDA3937_RS02845 0.21 -0.8 627,460 - DDA3937_RS02845 0.21 +0.0 627,460 - DDA3937_RS02845 0.21 +2.3 627,460 - DDA3937_RS02845 0.21 +1.0 627,612 + DDA3937_RS02845 0.37 +0.1 627,613 - DDA3937_RS02845 0.37 -0.1 627,780 + DDA3937_RS02845 0.55 -0.4 627,781 - DDA3937_RS02845 0.55 -0.9 627,781 - DDA3937_RS02845 0.55 +2.2 627,832 + DDA3937_RS02845 0.60 +3.9 627,832 + DDA3937_RS02845 0.60 -0.6 627,832 + DDA3937_RS02845 0.60 +0.9 627,832 + DDA3937_RS02845 0.60 -1.9 627,833 - DDA3937_RS02845 0.60 +0.6 627,833 - DDA3937_RS02845 0.60 -1.4 627,833 - DDA3937_RS02845 0.60 +0.0 627,833 - DDA3937_RS02845 0.60 -1.9 627,833 - DDA3937_RS02845 0.60 -0.8 627,833 - DDA3937_RS02845 0.60 +0.5 627,835 + DDA3937_RS02845 0.60 -1.5 627,835 + DDA3937_RS02845 0.60 -1.1 627,835 + DDA3937_RS02845 0.60 -1.3 627,835 + DDA3937_RS02845 0.60 +0.0 627,836 - DDA3937_RS02845 0.60 +0.3 627,836 - DDA3937_RS02845 0.60 +1.6 627,842 + DDA3937_RS02845 0.61 +1.6 627,843 - DDA3937_RS02845 0.61 -0.4 627,864 + DDA3937_RS02845 0.63 +0.0 627,864 + DDA3937_RS02845 0.63 -1.7 627,865 - DDA3937_RS02845 0.63 +0.2 627,906 + DDA3937_RS02845 0.68 -0.5 627,906 + DDA3937_RS02845 0.68 -0.4 628,029 + DDA3937_RS02845 0.81 -0.7 628,029 + DDA3937_RS02845 0.81 -0.5 628,029 + DDA3937_RS02845 0.81 -0.1 628,030 - DDA3937_RS02845 0.81 -0.6 628,030 - DDA3937_RS02845 0.81 -0.7 628,055 + DDA3937_RS02845 0.83 +0.9 628,134 + -1.1 628,156 + -1.6 628,156 + -0.0 628,156 + -1.8 628,156 + +0.5 628,157 - -1.7 628,157 - +2.0 628,157 - +0.6 628,157 - +1.2 628,157 - +1.2 628,157 - -1.3 628,157 - -0.3 628,157 - -2.0 628,157 - -0.9 628,202 + +0.6 628,202 + -1.9 628,202 + -0.9 628,202 + -0.3 628,202 + +1.7 628,202 + -0.2 628,202 + -0.6 628,202 + -0.1 628,202 + +6.8 628,202 + -2.1 628,202 + -0.2 628,202 + +0.3 628,202 + -0.3 628,203 - -0.3 628,203 - -0.0 628,203 - -0.4 628,203 - -0.8 628,203 - +0.9 628,203 - +1.2 628,203 - +1.5 628,203 - +3.2 628,204 + +0.6 628,204 + +0.3 628,204 + +0.3 628,204 + +1.5 628,204 + -0.9 628,204 + -1.3 628,204 + +0.2 628,204 + +0.8 628,204 + -0.5 628,205 - +2.6 628,205 - -0.8 628,205 - -0.9 628,205 - +0.1 628,205 - -0.1 628,205 - -1.1 628,205 - -1.0 628,205 - -0.0 628,208 + -0.1 628,208 + -0.1 628,208 + +1.4 628,208 + -0.0 628,208 + +0.5 628,208 + -0.3 628,209 - +1.0 628,209 - -0.9 628,213 + -0.4 628,213 + +0.3 628,214 - +1.2 628,214 - -0.2 628,214 - +1.6 628,219 + +0.8 628,220 - -0.9 628,220 - +0.5 628,309 + +0.2 628,310 - -1.2 628,312 + +0.2 628,313 - -0.3 628,313 - -1.2 628,323 + -0.6 628,323 + +0.2 628,324 - -1.7 628,352 + -0.3 628,352 + -0.3 628,352 + -1.1 628,353 - -0.4 628,353 - +0.0 628,353 - -0.4 628,353 - +0.6 628,353 - +0.4 628,359 + -0.4 628,359 + -0.0 628,359 + -1.6 628,360 - -1.2 628,368 + -1.0 628,368 + -0.2 628,369 - -0.4 628,369 - -0.6 628,377 + -0.8 628,377 + +0.3 628,378 - +0.4 628,378 - -2.4 628,378 - -1.0 628,411 + -0.8 628,411 + -1.0 628,411 + -0.2 628,412 - -0.0 628,412 - -0.3 628,412 - -0.0 628,436 + -0.3 628,460 + +2.2 628,460 + -0.5 628,461 - -0.1 628,461 - +0.3 628,461 - -1.7 628,465 + -0.3 628,475 - -1.7 628,581 - -1.0 628,607 - +0.4 628,607 - -0.4 628,648 + +1.8 628,649 - -1.3 628,710 - +0.1 628,763 + -0.9 628,763 + -0.7 628,763 + -0.1 628,763 + -0.5 628,764 - -0.1 628,764 - +0.6 628,851 + DDA3937_RS02850 0.16 -1.7 628,851 + DDA3937_RS02850 0.16 -1.7 628,887 - DDA3937_RS02850 0.19 -0.7 629,111 - DDA3937_RS02850 0.38 -0.8 629,111 - DDA3937_RS02850 0.38 +0.6 629,111 - DDA3937_RS02850 0.38 +0.6 629,111 - DDA3937_RS02850 0.38 -0.0 629,155 + DDA3937_RS02850 0.42 +0.1
Or see this region's nucleotide sequence