Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02680 and DDA3937_RS02685 are separated by 122 nucleotides DDA3937_RS02685 and DDA3937_RS02690 are separated by 140 nucleotides DDA3937_RS02690 and DDA3937_RS02695 are separated by 161 nucleotides DDA3937_RS02695 and DDA3937_RS02700 are separated by 162 nucleotides
DDA3937_RS02680: DDA3937_RS02680 - hypothetical protein, at 594,300 to 594,650
_RS02680
DDA3937_RS02685: DDA3937_RS02685 - hypothetical protein, at 594,773 to 594,961
_RS02685
DDA3937_RS02690: DDA3937_RS02690 - integrase arm-type DNA-binding domain-containing protein, at 595,102 to 596,361
_RS02690
DDA3937_RS02695: DDA3937_RS02695 - tRNA-Phe, at 596,523 to 596,598
_RS02695
DDA3937_RS02700: DDA3937_RS02700 - transcriptional regulator, at 596,761 to 597,336
_RS02700
Position (kb) 595
596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 594.215 kb on - strand at 594.238 kb on + strand at 594.366 kb on + strand, within DDA3937_RS02680 at 594.366 kb on + strand, within DDA3937_RS02680 at 594.366 kb on + strand, within DDA3937_RS02680 at 594.367 kb on - strand, within DDA3937_RS02680 at 594.402 kb on + strand, within DDA3937_RS02680 at 594.402 kb on + strand, within DDA3937_RS02680 at 594.403 kb on - strand, within DDA3937_RS02680 at 594.403 kb on - strand, within DDA3937_RS02680 at 594.446 kb on + strand, within DDA3937_RS02680 at 594.446 kb on + strand, within DDA3937_RS02680 at 594.447 kb on - strand, within DDA3937_RS02680 at 594.508 kb on + strand, within DDA3937_RS02680 at 594.508 kb on + strand, within DDA3937_RS02680 at 594.508 kb on + strand, within DDA3937_RS02680 at 594.508 kb on + strand, within DDA3937_RS02680 at 594.508 kb on + strand, within DDA3937_RS02680 at 594.509 kb on - strand, within DDA3937_RS02680 at 594.586 kb on + strand, within DDA3937_RS02680 at 594.586 kb on + strand, within DDA3937_RS02680 at 594.586 kb on + strand at 594.587 kb on - strand, within DDA3937_RS02680 at 594.616 kb on + strand at 594.616 kb on + strand at 594.616 kb on + strand at 594.632 kb on + strand at 594.633 kb on - strand at 594.635 kb on + strand at 594.650 kb on + strand at 594.651 kb on - strand at 594.656 kb on + strand at 594.656 kb on + strand at 594.657 kb on - strand at 594.657 kb on - strand at 594.657 kb on - strand at 594.657 kb on - strand at 594.665 kb on + strand at 594.666 kb on - strand at 594.698 kb on + strand at 594.699 kb on - strand at 594.742 kb on - strand at 594.753 kb on - strand at 594.773 kb on - strand at 594.822 kb on - strand, within DDA3937_RS02685 at 594.898 kb on + strand, within DDA3937_RS02685 at 594.898 kb on + strand, within DDA3937_RS02685 at 594.899 kb on - strand, within DDA3937_RS02685 at 594.906 kb on + strand, within DDA3937_RS02685 at 594.913 kb on + strand, within DDA3937_RS02685 at 594.952 kb on + strand at 594.953 kb on - strand at 594.953 kb on - strand at 594.959 kb on + strand at 594.960 kb on - strand at 594.960 kb on - strand at 594.960 kb on - strand at 594.995 kb on - strand at 595.001 kb on + strand at 595.002 kb on - strand at 595.034 kb on + strand at 595.035 kb on - strand at 595.061 kb on - strand at 595.115 kb on + strand at 595.127 kb on + strand at 595.128 kb on - strand at 595.128 kb on - strand at 595.128 kb on - strand at 595.128 kb on - strand at 595.131 kb on + strand at 595.131 kb on + strand at 595.131 kb on + strand at 595.132 kb on - strand at 595.132 kb on - strand at 595.134 kb on - strand at 595.169 kb on + strand at 595.170 kb on - strand at 595.222 kb on - strand at 595.229 kb on + strand, within DDA3937_RS02690 at 595.229 kb on + strand, within DDA3937_RS02690 at 595.229 kb on + strand, within DDA3937_RS02690 at 595.229 kb on + strand, within DDA3937_RS02690 at 595.230 kb on - strand, within DDA3937_RS02690 at 595.230 kb on - strand, within DDA3937_RS02690 at 595.230 kb on - strand, within DDA3937_RS02690 at 595.367 kb on + strand, within DDA3937_RS02690 at 595.367 kb on + strand, within DDA3937_RS02690 at 595.425 kb on + strand, within DDA3937_RS02690 at 595.425 kb on + strand, within DDA3937_RS02690 at 595.426 kb on - strand, within DDA3937_RS02690 at 595.426 kb on - strand, within DDA3937_RS02690 at 595.426 kb on - strand, within DDA3937_RS02690 at 595.596 kb on + strand, within DDA3937_RS02690 at 595.596 kb on + strand, within DDA3937_RS02690 at 595.706 kb on + strand, within DDA3937_RS02690 at 595.706 kb on + strand, within DDA3937_RS02690 at 595.707 kb on - strand, within DDA3937_RS02690 at 595.812 kb on + strand, within DDA3937_RS02690 at 595.814 kb on + strand, within DDA3937_RS02690 at 595.814 kb on + strand, within DDA3937_RS02690 at 595.815 kb on - strand, within DDA3937_RS02690 at 595.835 kb on - strand, within DDA3937_RS02690 at 595.908 kb on + strand, within DDA3937_RS02690 at 595.909 kb on - strand at 595.909 kb on - strand, within DDA3937_RS02690 at 595.909 kb on - strand, within DDA3937_RS02690 at 595.983 kb on - strand, within DDA3937_RS02690 at 596.143 kb on + strand, within DDA3937_RS02690 at 596.144 kb on - strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.148 kb on + strand, within DDA3937_RS02690 at 596.149 kb on - strand, within DDA3937_RS02690 at 596.149 kb on - strand, within DDA3937_RS02690 at 596.149 kb on - strand, within DDA3937_RS02690 at 596.149 kb on - strand, within DDA3937_RS02690 at 596.249 kb on + strand at 596.249 kb on + strand at 596.250 kb on - strand at 596.254 kb on + strand at 596.254 kb on + strand at 596.254 kb on + strand at 596.254 kb on + strand at 596.254 kb on + strand at 596.255 kb on - strand at 596.255 kb on - strand at 596.255 kb on - strand at 596.255 kb on - strand at 596.255 kb on - strand at 596.255 kb on - strand at 596.259 kb on + strand at 596.260 kb on - strand at 596.285 kb on + strand at 596.310 kb on + strand at 596.311 kb on - strand at 596.357 kb on - strand at 596.357 kb on - strand at 596.361 kb on + strand at 596.361 kb on + strand at 596.361 kb on + strand at 596.361 kb on + strand at 596.362 kb on - strand at 596.362 kb on - strand at 596.362 kb on - strand at 596.362 kb on - strand at 596.362 kb on - strand at 596.487 kb on + strand at 596.489 kb on + strand at 596.509 kb on + strand at 596.510 kb on - strand at 596.510 kb on - strand at 596.611 kb on + strand at 596.611 kb on + strand at 596.703 kb on + strand at 596.704 kb on - strand at 596.704 kb on - strand at 596.715 kb on + strand at 596.715 kb on + strand at 596.715 kb on + strand at 596.716 kb on - strand at 596.716 kb on - strand at 596.855 kb on - strand, within DDA3937_RS02700 at 596.899 kb on + strand, within DDA3937_RS02700 at 596.900 kb on - strand, within DDA3937_RS02700 at 596.954 kb on + strand, within DDA3937_RS02700 at 596.954 kb on + strand, within DDA3937_RS02700 at 596.955 kb on - strand, within DDA3937_RS02700 at 596.960 kb on + strand, within DDA3937_RS02700 at 596.961 kb on - strand, within DDA3937_RS02700 at 597.041 kb on - strand, within DDA3937_RS02700 at 597.041 kb on - strand, within DDA3937_RS02700 at 597.041 kb on - strand, within DDA3937_RS02700 at 597.041 kb on - strand, within DDA3937_RS02700 at 597.144 kb on + strand, within DDA3937_RS02700 at 597.144 kb on + strand, within DDA3937_RS02700 at 597.145 kb on - strand, within DDA3937_RS02700 at 597.153 kb on + strand, within DDA3937_RS02700 at 597.153 kb on + strand, within DDA3937_RS02700 at 597.154 kb on - strand, within DDA3937_RS02700 at 597.154 kb on - strand, within DDA3937_RS02700 at 597.188 kb on + strand, within DDA3937_RS02700 at 597.188 kb on + strand, within DDA3937_RS02700 at 597.189 kb on - strand, within DDA3937_RS02700 at 597.189 kb on - strand, within DDA3937_RS02700 at 597.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 594,215 - +0.5 594,238 + -0.8 594,366 + DDA3937_RS02680 0.19 -0.8 594,366 + DDA3937_RS02680 0.19 -0.6 594,366 + DDA3937_RS02680 0.19 +1.1 594,367 - DDA3937_RS02680 0.19 +1.4 594,402 + DDA3937_RS02680 0.29 -1.2 594,402 + DDA3937_RS02680 0.29 -1.2 594,403 - DDA3937_RS02680 0.29 +2.4 594,403 - DDA3937_RS02680 0.29 -2.6 594,446 + DDA3937_RS02680 0.42 -0.6 594,446 + DDA3937_RS02680 0.42 +0.3 594,447 - DDA3937_RS02680 0.42 +0.2 594,508 + DDA3937_RS02680 0.59 +0.2 594,508 + DDA3937_RS02680 0.59 +0.9 594,508 + DDA3937_RS02680 0.59 -0.7 594,508 + DDA3937_RS02680 0.59 +0.1 594,508 + DDA3937_RS02680 0.59 -1.3 594,509 - DDA3937_RS02680 0.60 +1.2 594,586 + DDA3937_RS02680 0.81 +0.7 594,586 + DDA3937_RS02680 0.81 +0.6 594,586 + +0.6 594,587 - DDA3937_RS02680 0.82 +0.0 594,616 + +0.5 594,616 + -0.2 594,616 + +1.6 594,632 + -0.6 594,633 - -0.6 594,635 + +0.2 594,650 + -0.3 594,651 - +1.7 594,656 + -0.6 594,656 + -0.1 594,657 - +0.5 594,657 - +0.7 594,657 - +0.6 594,657 - -0.4 594,665 + +2.4 594,666 - +0.2 594,698 + +0.6 594,699 - +0.1 594,742 - -0.2 594,753 - -3.5 594,773 - +0.2 594,822 - DDA3937_RS02685 0.26 +3.8 594,898 + DDA3937_RS02685 0.66 +0.5 594,898 + DDA3937_RS02685 0.66 -0.4 594,899 - DDA3937_RS02685 0.67 -0.7 594,906 + DDA3937_RS02685 0.70 +1.4 594,913 + DDA3937_RS02685 0.74 +0.2 594,952 + +1.5 594,953 - +1.6 594,953 - +0.3 594,959 + +1.1 594,960 - +1.9 594,960 - -0.0 594,960 - +0.5 594,995 - -0.4 595,001 + -1.5 595,002 - +0.2 595,034 + -0.2 595,035 - -0.3 595,061 - +0.6 595,115 + -0.4 595,127 + -0.9 595,128 - -1.4 595,128 - -0.8 595,128 - -0.4 595,128 - -1.1 595,131 + -0.5 595,131 + -1.2 595,131 + +0.5 595,132 - -3.1 595,132 - +0.5 595,134 - +2.5 595,169 + -0.8 595,170 - -1.3 595,222 - -1.0 595,229 + DDA3937_RS02690 0.10 +0.1 595,229 + DDA3937_RS02690 0.10 -0.7 595,229 + DDA3937_RS02690 0.10 -0.4 595,229 + DDA3937_RS02690 0.10 -1.7 595,230 - DDA3937_RS02690 0.10 -0.6 595,230 - DDA3937_RS02690 0.10 -0.5 595,230 - DDA3937_RS02690 0.10 +0.2 595,367 + DDA3937_RS02690 0.21 -2.0 595,367 + DDA3937_RS02690 0.21 -2.4 595,425 + DDA3937_RS02690 0.26 -0.2 595,425 + DDA3937_RS02690 0.26 -3.0 595,426 - DDA3937_RS02690 0.26 -0.0 595,426 - DDA3937_RS02690 0.26 -1.1 595,426 - DDA3937_RS02690 0.26 +0.8 595,596 + DDA3937_RS02690 0.39 +0.4 595,596 + DDA3937_RS02690 0.39 +1.1 595,706 + DDA3937_RS02690 0.48 -1.6 595,706 + DDA3937_RS02690 0.48 -0.9 595,707 - DDA3937_RS02690 0.48 +0.9 595,812 + DDA3937_RS02690 0.56 -1.6 595,814 + DDA3937_RS02690 0.57 -0.1 595,814 + DDA3937_RS02690 0.57 -0.8 595,815 - DDA3937_RS02690 0.57 +0.6 595,835 - DDA3937_RS02690 0.58 +0.1 595,908 + DDA3937_RS02690 0.64 +1.5 595,909 - +1.2 595,909 - DDA3937_RS02690 0.64 -2.1 595,909 - DDA3937_RS02690 0.64 -1.1 595,983 - DDA3937_RS02690 0.70 +0.1 596,143 + DDA3937_RS02690 0.83 +0.8 596,144 - DDA3937_RS02690 0.83 -2.9 596,148 + DDA3937_RS02690 0.83 -0.3 596,148 + DDA3937_RS02690 0.83 -1.6 596,148 + DDA3937_RS02690 0.83 -0.4 596,148 + DDA3937_RS02690 0.83 +0.1 596,148 + DDA3937_RS02690 0.83 +1.2 596,148 + DDA3937_RS02690 0.83 -0.4 596,148 + DDA3937_RS02690 0.83 -0.4 596,149 - DDA3937_RS02690 0.83 -1.9 596,149 - DDA3937_RS02690 0.83 +0.6 596,149 - DDA3937_RS02690 0.83 -0.6 596,149 - DDA3937_RS02690 0.83 -0.7 596,249 + -1.6 596,249 + -0.8 596,250 - -1.4 596,254 + -2.2 596,254 + -0.8 596,254 + +0.5 596,254 + -0.2 596,254 + -0.8 596,255 - +1.2 596,255 - -0.2 596,255 - -0.1 596,255 - -1.1 596,255 - -1.5 596,255 - -1.4 596,259 + -0.9 596,260 - -0.5 596,285 + +0.6 596,310 + -0.4 596,311 - +2.9 596,357 - -0.5 596,357 - +0.4 596,361 + -1.0 596,361 + -0.6 596,361 + -0.1 596,361 + -1.7 596,362 - -0.2 596,362 - -1.1 596,362 - -0.9 596,362 - +0.1 596,362 - -0.4 596,487 + -1.3 596,489 + +0.7 596,509 + -0.2 596,510 - -1.3 596,510 - +0.0 596,611 + -0.7 596,611 + -0.8 596,703 + -0.4 596,704 - -1.1 596,704 - -1.3 596,715 + -1.3 596,715 + +0.6 596,715 + -1.4 596,716 - -1.9 596,716 - -0.1 596,855 - DDA3937_RS02700 0.16 -0.3 596,899 + DDA3937_RS02700 0.24 -1.1 596,900 - DDA3937_RS02700 0.24 -1.6 596,954 + DDA3937_RS02700 0.34 -1.1 596,954 + DDA3937_RS02700 0.34 +0.6 596,955 - DDA3937_RS02700 0.34 -0.3 596,960 + DDA3937_RS02700 0.35 -0.4 596,961 - DDA3937_RS02700 0.35 +0.5 597,041 - DDA3937_RS02700 0.49 +1.4 597,041 - DDA3937_RS02700 0.49 -0.8 597,041 - DDA3937_RS02700 0.49 -0.3 597,041 - DDA3937_RS02700 0.49 +0.9 597,144 + DDA3937_RS02700 0.66 -0.3 597,144 + DDA3937_RS02700 0.66 -2.4 597,145 - DDA3937_RS02700 0.67 +0.2 597,153 + DDA3937_RS02700 0.68 -0.3 597,153 + DDA3937_RS02700 0.68 -0.1 597,154 - DDA3937_RS02700 0.68 +0.3 597,154 - DDA3937_RS02700 0.68 -0.8 597,188 + DDA3937_RS02700 0.74 +0.7 597,188 + DDA3937_RS02700 0.74 -1.5 597,189 - DDA3937_RS02700 0.74 +0.8 597,189 - DDA3937_RS02700 0.74 -0.3 597,353 - -0.7
Or see this region's nucleotide sequence