Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02675 and DDA3937_RS02680 are separated by 900 nucleotides DDA3937_RS02680 and DDA3937_RS02685 are separated by 122 nucleotides DDA3937_RS02685 and DDA3937_RS02690 are separated by 140 nucleotides
DDA3937_RS02675: DDA3937_RS02675 - hypothetical protein, at 592,656 to 593,399
_RS02675
DDA3937_RS02680: DDA3937_RS02680 - hypothetical protein, at 594,300 to 594,650
_RS02680
DDA3937_RS02685: DDA3937_RS02685 - hypothetical protein, at 594,773 to 594,961
_RS02685
DDA3937_RS02690: DDA3937_RS02690 - integrase arm-type DNA-binding domain-containing protein, at 595,102 to 596,361
_RS02690
Position (kb) 594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 593.315 kb on - strand, within DDA3937_RS02675 at 593.315 kb on - strand, within DDA3937_RS02675 at 593.315 kb on - strand, within DDA3937_RS02675 at 593.438 kb on + strand at 593.438 kb on + strand at 593.439 kb on - strand at 593.554 kb on - strand at 593.786 kb on + strand at 593.822 kb on + strand at 593.822 kb on + strand at 593.823 kb on - strand at 593.859 kb on - strand at 594.215 kb on - strand at 594.238 kb on + strand at 594.366 kb on + strand, within DDA3937_RS02680 at 594.366 kb on + strand, within DDA3937_RS02680 at 594.366 kb on + strand, within DDA3937_RS02680 at 594.367 kb on - strand, within DDA3937_RS02680 at 594.402 kb on + strand, within DDA3937_RS02680 at 594.402 kb on + strand, within DDA3937_RS02680 at 594.403 kb on - strand, within DDA3937_RS02680 at 594.403 kb on - strand, within DDA3937_RS02680 at 594.446 kb on + strand, within DDA3937_RS02680 at 594.446 kb on + strand, within DDA3937_RS02680 at 594.447 kb on - strand, within DDA3937_RS02680 at 594.508 kb on + strand, within DDA3937_RS02680 at 594.508 kb on + strand, within DDA3937_RS02680 at 594.508 kb on + strand, within DDA3937_RS02680 at 594.508 kb on + strand, within DDA3937_RS02680 at 594.508 kb on + strand, within DDA3937_RS02680 at 594.509 kb on - strand, within DDA3937_RS02680 at 594.586 kb on + strand, within DDA3937_RS02680 at 594.586 kb on + strand, within DDA3937_RS02680 at 594.586 kb on + strand at 594.587 kb on - strand, within DDA3937_RS02680 at 594.616 kb on + strand at 594.616 kb on + strand at 594.616 kb on + strand at 594.632 kb on + strand at 594.633 kb on - strand at 594.635 kb on + strand at 594.650 kb on + strand at 594.651 kb on - strand at 594.656 kb on + strand at 594.656 kb on + strand at 594.657 kb on - strand at 594.657 kb on - strand at 594.657 kb on - strand at 594.657 kb on - strand at 594.665 kb on + strand at 594.666 kb on - strand at 594.698 kb on + strand at 594.699 kb on - strand at 594.742 kb on - strand at 594.753 kb on - strand at 594.773 kb on - strand at 594.822 kb on - strand, within DDA3937_RS02685 at 594.898 kb on + strand, within DDA3937_RS02685 at 594.898 kb on + strand, within DDA3937_RS02685 at 594.899 kb on - strand, within DDA3937_RS02685 at 594.906 kb on + strand, within DDA3937_RS02685 at 594.913 kb on + strand, within DDA3937_RS02685 at 594.952 kb on + strand at 594.953 kb on - strand at 594.953 kb on - strand at 594.959 kb on + strand at 594.960 kb on - strand at 594.960 kb on - strand at 594.960 kb on - strand at 594.995 kb on - strand at 595.001 kb on + strand at 595.002 kb on - strand at 595.034 kb on + strand at 595.035 kb on - strand at 595.061 kb on - strand at 595.115 kb on + strand at 595.127 kb on + strand at 595.128 kb on - strand at 595.128 kb on - strand at 595.128 kb on - strand at 595.128 kb on - strand at 595.131 kb on + strand at 595.131 kb on + strand at 595.131 kb on + strand at 595.132 kb on - strand at 595.132 kb on - strand at 595.134 kb on - strand at 595.169 kb on + strand at 595.170 kb on - strand at 595.222 kb on - strand at 595.229 kb on + strand, within DDA3937_RS02690 at 595.229 kb on + strand, within DDA3937_RS02690 at 595.229 kb on + strand, within DDA3937_RS02690 at 595.229 kb on + strand, within DDA3937_RS02690 at 595.230 kb on - strand, within DDA3937_RS02690 at 595.230 kb on - strand, within DDA3937_RS02690 at 595.230 kb on - strand, within DDA3937_RS02690 at 595.367 kb on + strand, within DDA3937_RS02690 at 595.367 kb on + strand, within DDA3937_RS02690 at 595.425 kb on + strand, within DDA3937_RS02690 at 595.425 kb on + strand, within DDA3937_RS02690 at 595.426 kb on - strand, within DDA3937_RS02690 at 595.426 kb on - strand, within DDA3937_RS02690 at 595.426 kb on - strand, within DDA3937_RS02690 at 595.596 kb on + strand, within DDA3937_RS02690 at 595.596 kb on + strand, within DDA3937_RS02690
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 593,315 - DDA3937_RS02675 0.89 -0.2 593,315 - DDA3937_RS02675 0.89 -0.8 593,315 - DDA3937_RS02675 0.89 -1.9 593,438 + -0.9 593,438 + -0.0 593,439 - +0.3 593,554 - -1.0 593,786 + -0.9 593,822 + -0.5 593,822 + -0.8 593,823 - -2.1 593,859 - -1.0 594,215 - +0.5 594,238 + -0.8 594,366 + DDA3937_RS02680 0.19 -0.8 594,366 + DDA3937_RS02680 0.19 -0.6 594,366 + DDA3937_RS02680 0.19 +1.1 594,367 - DDA3937_RS02680 0.19 +1.4 594,402 + DDA3937_RS02680 0.29 -1.2 594,402 + DDA3937_RS02680 0.29 -1.2 594,403 - DDA3937_RS02680 0.29 +2.4 594,403 - DDA3937_RS02680 0.29 -2.6 594,446 + DDA3937_RS02680 0.42 -0.6 594,446 + DDA3937_RS02680 0.42 +0.3 594,447 - DDA3937_RS02680 0.42 +0.2 594,508 + DDA3937_RS02680 0.59 +0.2 594,508 + DDA3937_RS02680 0.59 +0.9 594,508 + DDA3937_RS02680 0.59 -0.7 594,508 + DDA3937_RS02680 0.59 +0.1 594,508 + DDA3937_RS02680 0.59 -1.3 594,509 - DDA3937_RS02680 0.60 +1.2 594,586 + DDA3937_RS02680 0.81 +0.7 594,586 + DDA3937_RS02680 0.81 +0.6 594,586 + +0.6 594,587 - DDA3937_RS02680 0.82 +0.0 594,616 + +0.5 594,616 + -0.2 594,616 + +1.6 594,632 + -0.6 594,633 - -0.6 594,635 + +0.2 594,650 + -0.3 594,651 - +1.7 594,656 + -0.6 594,656 + -0.1 594,657 - +0.5 594,657 - +0.7 594,657 - +0.6 594,657 - -0.4 594,665 + +2.4 594,666 - +0.2 594,698 + +0.6 594,699 - +0.1 594,742 - -0.2 594,753 - -3.5 594,773 - +0.2 594,822 - DDA3937_RS02685 0.26 +3.8 594,898 + DDA3937_RS02685 0.66 +0.5 594,898 + DDA3937_RS02685 0.66 -0.4 594,899 - DDA3937_RS02685 0.67 -0.7 594,906 + DDA3937_RS02685 0.70 +1.4 594,913 + DDA3937_RS02685 0.74 +0.2 594,952 + +1.5 594,953 - +1.6 594,953 - +0.3 594,959 + +1.1 594,960 - +1.9 594,960 - -0.0 594,960 - +0.5 594,995 - -0.4 595,001 + -1.5 595,002 - +0.2 595,034 + -0.2 595,035 - -0.3 595,061 - +0.6 595,115 + -0.4 595,127 + -0.9 595,128 - -1.4 595,128 - -0.8 595,128 - -0.4 595,128 - -1.1 595,131 + -0.5 595,131 + -1.2 595,131 + +0.5 595,132 - -3.1 595,132 - +0.5 595,134 - +2.5 595,169 + -0.8 595,170 - -1.3 595,222 - -1.0 595,229 + DDA3937_RS02690 0.10 +0.1 595,229 + DDA3937_RS02690 0.10 -0.7 595,229 + DDA3937_RS02690 0.10 -0.4 595,229 + DDA3937_RS02690 0.10 -1.7 595,230 - DDA3937_RS02690 0.10 -0.6 595,230 - DDA3937_RS02690 0.10 -0.5 595,230 - DDA3937_RS02690 0.10 +0.2 595,367 + DDA3937_RS02690 0.21 -2.0 595,367 + DDA3937_RS02690 0.21 -2.4 595,425 + DDA3937_RS02690 0.26 -0.2 595,425 + DDA3937_RS02690 0.26 -3.0 595,426 - DDA3937_RS02690 0.26 -0.0 595,426 - DDA3937_RS02690 0.26 -1.1 595,426 - DDA3937_RS02690 0.26 +0.8 595,596 + DDA3937_RS02690 0.39 +0.4 595,596 + DDA3937_RS02690 0.39 +1.1
Or see this region's nucleotide sequence