Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02420

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02415 and DDA3937_RS02420 are separated by 69 nucleotidesDDA3937_RS02420 and DDA3937_RS02425 are separated by 80 nucleotides DDA3937_RS02415: DDA3937_RS02415 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 534,321 to 535,577 _RS02415 DDA3937_RS02420: DDA3937_RS02420 - DNA repair protein RadA, at 535,647 to 537,032 _RS02420 DDA3937_RS02425: DDA3937_RS02425 - phosphoserine phosphatase, at 537,113 to 538,090 _RS02425 Position (kb) 535 536 537 538Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 534.676 kb on + strand, within DDA3937_RS02415at 534.677 kb on - strand, within DDA3937_RS02415at 534.697 kb on + strand, within DDA3937_RS02415at 534.698 kb on - strand, within DDA3937_RS02415at 534.779 kb on - strand, within DDA3937_RS02415at 534.779 kb on - strand, within DDA3937_RS02415at 534.779 kb on - strand, within DDA3937_RS02415at 534.914 kb on + strandat 534.914 kb on + strand, within DDA3937_RS02415at 534.915 kb on - strand, within DDA3937_RS02415at 534.915 kb on - strand, within DDA3937_RS02415at 534.916 kb on + strand, within DDA3937_RS02415at 534.916 kb on + strand, within DDA3937_RS02415at 534.916 kb on + strand, within DDA3937_RS02415at 534.916 kb on + strand, within DDA3937_RS02415at 534.916 kb on + strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 534.917 kb on - strand, within DDA3937_RS02415at 535.022 kb on - strand, within DDA3937_RS02415at 535.051 kb on + strand, within DDA3937_RS02415at 535.051 kb on + strand, within DDA3937_RS02415at 535.085 kb on + strand, within DDA3937_RS02415at 535.085 kb on + strand, within DDA3937_RS02415at 535.085 kb on + strand, within DDA3937_RS02415at 535.086 kb on - strand, within DDA3937_RS02415at 535.086 kb on - strand, within DDA3937_RS02415at 535.296 kb on + strand, within DDA3937_RS02415at 535.296 kb on + strand, within DDA3937_RS02415at 535.297 kb on - strand, within DDA3937_RS02415at 535.297 kb on - strand, within DDA3937_RS02415at 535.297 kb on - strand, within DDA3937_RS02415at 535.297 kb on - strand, within DDA3937_RS02415at 535.297 kb on - strand, within DDA3937_RS02415at 535.297 kb on - strandat 535.334 kb on - strand, within DDA3937_RS02415at 535.358 kb on - strand, within DDA3937_RS02415at 535.371 kb on + strand, within DDA3937_RS02415at 535.371 kb on + strand, within DDA3937_RS02415at 535.372 kb on - strand, within DDA3937_RS02415at 535.372 kb on - strand, within DDA3937_RS02415at 535.397 kb on - strand, within DDA3937_RS02415at 535.434 kb on + strand, within DDA3937_RS02415at 535.434 kb on + strand, within DDA3937_RS02415at 535.434 kb on + strand, within DDA3937_RS02415at 535.486 kb on + strandat 535.567 kb on + strandat 535.611 kb on + strandat 535.611 kb on + strandat 535.611 kb on + strandat 535.612 kb on - strandat 535.612 kb on - strandat 535.612 kb on - strandat 535.612 kb on - strandat 535.612 kb on - strandat 535.617 kb on - strandat 535.698 kb on + strandat 535.699 kb on - strandat 535.699 kb on - strandat 535.784 kb on + strandat 535.784 kb on + strandat 535.784 kb on + strandat 535.785 kb on - strandat 536.124 kb on + strand, within DDA3937_RS02420at 536.124 kb on + strand, within DDA3937_RS02420at 536.124 kb on + strand, within DDA3937_RS02420at 536.125 kb on - strand, within DDA3937_RS02420at 536.125 kb on - strand, within DDA3937_RS02420at 536.125 kb on - strand, within DDA3937_RS02420at 536.125 kb on - strand, within DDA3937_RS02420at 536.223 kb on + strand, within DDA3937_RS02420at 536.322 kb on - strand, within DDA3937_RS02420at 536.322 kb on - strand, within DDA3937_RS02420at 536.422 kb on + strand, within DDA3937_RS02420at 536.650 kb on + strand, within DDA3937_RS02420at 536.650 kb on + strand, within DDA3937_RS02420at 536.651 kb on - strand, within DDA3937_RS02420at 536.651 kb on - strand, within DDA3937_RS02420at 536.651 kb on - strand, within DDA3937_RS02420at 536.651 kb on - strand, within DDA3937_RS02420at 536.651 kb on - strand, within DDA3937_RS02420at 536.702 kb on + strand, within DDA3937_RS02420at 536.833 kb on - strand, within DDA3937_RS02420at 536.980 kb on + strandat 537.000 kb on - strandat 537.037 kb on + strandat 537.037 kb on + strandat 537.038 kb on - strandat 537.038 kb on - strandat 537.038 kb on - strandat 537.038 kb on - strandat 537.038 kb on - strandat 537.049 kb on - strandat 537.049 kb on - strandat 537.074 kb on - strandat 537.076 kb on + strandat 537.076 kb on + strandat 537.076 kb on + strandat 537.077 kb on - strandat 537.077 kb on - strandat 537.077 kb on - strandat 537.090 kb on - strandat 537.103 kb on - strandat 537.103 kb on - strandat 537.343 kb on + strand, within DDA3937_RS02425at 537.344 kb on - strand, within DDA3937_RS02425at 537.345 kb on + strand, within DDA3937_RS02425at 537.346 kb on - strand, within DDA3937_RS02425at 537.451 kb on - strand, within DDA3937_RS02425at 537.451 kb on - strand, within DDA3937_RS02425at 537.462 kb on + strand, within DDA3937_RS02425at 537.463 kb on - strand, within DDA3937_RS02425at 537.463 kb on - strand, within DDA3937_RS02425at 537.463 kb on - strand, within DDA3937_RS02425at 537.463 kb on - strand, within DDA3937_RS02425at 537.668 kb on + strand, within DDA3937_RS02425at 537.668 kb on + strand, within DDA3937_RS02425at 537.710 kb on - strand, within DDA3937_RS02425at 537.710 kb on - strand, within DDA3937_RS02425at 537.710 kb on - strand, within DDA3937_RS02425at 537.710 kb on - strand, within DDA3937_RS02425at 537.710 kb on - strand, within DDA3937_RS02425at 537.783 kb on + strandat 537.783 kb on + strand, within DDA3937_RS02425at 537.783 kb on + strand, within DDA3937_RS02425at 537.783 kb on + strand, within DDA3937_RS02425at 537.783 kb on + strand, within DDA3937_RS02425at 537.783 kb on + strand, within DDA3937_RS02425at 537.784 kb on - strand, within DDA3937_RS02425at 537.784 kb on - strand, within DDA3937_RS02425at 537.784 kb on - strand, within DDA3937_RS02425at 537.784 kb on - strand, within DDA3937_RS02425at 537.784 kb on - strand, within DDA3937_RS02425at 537.856 kb on + strand, within DDA3937_RS02425at 537.856 kb on + strand, within DDA3937_RS02425at 537.856 kb on + strand, within DDA3937_RS02425at 537.857 kb on - strand, within DDA3937_RS02425at 537.857 kb on - strand, within DDA3937_RS02425at 537.857 kb on - strand, within DDA3937_RS02425at 537.861 kb on - strand, within DDA3937_RS02425at 537.939 kb on + strand, within DDA3937_RS02425at 537.940 kb on - strand, within DDA3937_RS02425at 537.940 kb on - strand, within DDA3937_RS02425at 537.960 kb on + strand, within DDA3937_RS02425at 537.961 kb on - strand, within DDA3937_RS02425at 538.003 kb on + strandat 538.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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534,676 + DDA3937_RS02415 0.28 -0.9
534,677 - DDA3937_RS02415 0.28 -1.1
534,697 + DDA3937_RS02415 0.30 -0.7
534,698 - DDA3937_RS02415 0.30 +1.6
534,779 - DDA3937_RS02415 0.36 -0.3
534,779 - DDA3937_RS02415 0.36 -0.0
534,779 - DDA3937_RS02415 0.36 +0.0
534,914 + +3.2
534,914 + DDA3937_RS02415 0.47 +0.7
534,915 - DDA3937_RS02415 0.47 +0.9
534,915 - DDA3937_RS02415 0.47 -0.7
534,916 + DDA3937_RS02415 0.47 -1.5
534,916 + DDA3937_RS02415 0.47 -0.3
534,916 + DDA3937_RS02415 0.47 -1.2
534,916 + DDA3937_RS02415 0.47 -0.8
534,916 + DDA3937_RS02415 0.47 -0.6
534,917 - DDA3937_RS02415 0.47 -0.1
534,917 - DDA3937_RS02415 0.47 +1.9
534,917 - DDA3937_RS02415 0.47 -0.3
534,917 - DDA3937_RS02415 0.47 -0.9
534,917 - DDA3937_RS02415 0.47 -0.3
534,917 - DDA3937_RS02415 0.47 -0.1
534,917 - DDA3937_RS02415 0.47 -0.7
535,022 - DDA3937_RS02415 0.56 -2.1
535,051 + DDA3937_RS02415 0.58 -0.8
535,051 + DDA3937_RS02415 0.58 -2.6
535,085 + DDA3937_RS02415 0.61 +1.2
535,085 + DDA3937_RS02415 0.61 +0.6
535,085 + DDA3937_RS02415 0.61 -0.6
535,086 - DDA3937_RS02415 0.61 -1.4
535,086 - DDA3937_RS02415 0.61 +0.2
535,296 + DDA3937_RS02415 0.78 -0.7
535,296 + DDA3937_RS02415 0.78 -1.2
535,297 - DDA3937_RS02415 0.78 +1.0
535,297 - DDA3937_RS02415 0.78 -1.6
535,297 - DDA3937_RS02415 0.78 -1.3
535,297 - DDA3937_RS02415 0.78 +0.2
535,297 - DDA3937_RS02415 0.78 -0.8
535,297 - +0.7
535,334 - DDA3937_RS02415 0.81 +0.9
535,358 - DDA3937_RS02415 0.82 -1.3
535,371 + DDA3937_RS02415 0.84 -1.1
535,371 + DDA3937_RS02415 0.84 -0.8
535,372 - DDA3937_RS02415 0.84 -1.7
535,372 - DDA3937_RS02415 0.84 +0.6
535,397 - DDA3937_RS02415 0.86 -2.0
535,434 + DDA3937_RS02415 0.89 -1.3
535,434 + DDA3937_RS02415 0.89 -0.9
535,434 + DDA3937_RS02415 0.89 +3.9
535,486 + +0.0
535,567 + -0.9
535,611 + -1.8
535,611 + -1.5
535,611 + +0.6
535,612 - +0.0
535,612 - +1.2
535,612 - -0.5
535,612 - -3.0
535,612 - +0.5
535,617 - -1.0
535,698 + -0.2
535,699 - -2.0
535,699 - +0.5
535,784 + +2.2
535,784 + -0.9
535,784 + -1.5
535,785 - -0.9
536,124 + DDA3937_RS02420 0.34 -2.0
536,124 + DDA3937_RS02420 0.34 -0.6
536,124 + DDA3937_RS02420 0.34 +1.9
536,125 - DDA3937_RS02420 0.34 -0.3
536,125 - DDA3937_RS02420 0.34 -1.5
536,125 - DDA3937_RS02420 0.34 -0.4
536,125 - DDA3937_RS02420 0.34 +0.4
536,223 + DDA3937_RS02420 0.42 +0.4
536,322 - DDA3937_RS02420 0.49 +1.2
536,322 - DDA3937_RS02420 0.49 -0.8
536,422 + DDA3937_RS02420 0.56 -0.5
536,650 + DDA3937_RS02420 0.72 -1.0
536,650 + DDA3937_RS02420 0.72 -1.8
536,651 - DDA3937_RS02420 0.72 -0.8
536,651 - DDA3937_RS02420 0.72 -1.7
536,651 - DDA3937_RS02420 0.72 +0.4
536,651 - DDA3937_RS02420 0.72 -1.2
536,651 - DDA3937_RS02420 0.72 -0.0
536,702 + DDA3937_RS02420 0.76 -1.5
536,833 - DDA3937_RS02420 0.86 -1.0
536,980 + +0.4
537,000 - -1.1
537,037 + -0.9
537,037 + +0.3
537,038 - -1.4
537,038 - +0.8
537,038 - -0.6
537,038 - +1.2
537,038 - -1.3
537,049 - +0.7
537,049 - +0.7
537,074 - +0.1
537,076 + -2.0
537,076 + +0.7
537,076 + +0.4
537,077 - -0.2
537,077 - -0.6
537,077 - +0.3
537,090 - -0.8
537,103 - -0.0
537,103 - -0.7
537,343 + DDA3937_RS02425 0.24 -0.6
537,344 - DDA3937_RS02425 0.24 -2.8
537,345 + DDA3937_RS02425 0.24 -2.4
537,346 - DDA3937_RS02425 0.24 -3.4
537,451 - DDA3937_RS02425 0.35 -0.8
537,451 - DDA3937_RS02425 0.35 -0.9
537,462 + DDA3937_RS02425 0.36 -0.3
537,463 - DDA3937_RS02425 0.36 -2.6
537,463 - DDA3937_RS02425 0.36 -1.3
537,463 - DDA3937_RS02425 0.36 -0.8
537,463 - DDA3937_RS02425 0.36 -2.0
537,668 + DDA3937_RS02425 0.57 -0.8
537,668 + DDA3937_RS02425 0.57 +1.2
537,710 - DDA3937_RS02425 0.61 -1.2
537,710 - DDA3937_RS02425 0.61 -2.4
537,710 - DDA3937_RS02425 0.61 -1.1
537,710 - DDA3937_RS02425 0.61 -3.0
537,710 - DDA3937_RS02425 0.61 +0.2
537,783 + +0.2
537,783 + DDA3937_RS02425 0.69 -1.2
537,783 + DDA3937_RS02425 0.69 -1.2
537,783 + DDA3937_RS02425 0.69 +0.2
537,783 + DDA3937_RS02425 0.69 +0.5
537,783 + DDA3937_RS02425 0.69 -0.8
537,784 - DDA3937_RS02425 0.69 -1.5
537,784 - DDA3937_RS02425 0.69 -2.5
537,784 - DDA3937_RS02425 0.69 -2.1
537,784 - DDA3937_RS02425 0.69 -1.2
537,784 - DDA3937_RS02425 0.69 -0.3
537,856 + DDA3937_RS02425 0.76 +0.7
537,856 + DDA3937_RS02425 0.76 -1.8
537,856 + DDA3937_RS02425 0.76 -4.0
537,857 - DDA3937_RS02425 0.76 -0.9
537,857 - DDA3937_RS02425 0.76 -3.0
537,857 - DDA3937_RS02425 0.76 -2.4
537,861 - DDA3937_RS02425 0.76 -3.2
537,939 + DDA3937_RS02425 0.84 -1.8
537,940 - DDA3937_RS02425 0.85 -0.8
537,940 - DDA3937_RS02425 0.85 -0.8
537,960 + DDA3937_RS02425 0.87 -0.3
537,961 - DDA3937_RS02425 0.87 -1.3
538,003 + -1.5
538,004 - -2.5

Or see this region's nucleotide sequence