Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02210 and DDA3937_RS02215 are separated by 113 nucleotides DDA3937_RS02215 and DDA3937_RS02220 are separated by 70 nucleotides DDA3937_RS02220 and DDA3937_RS02225 are separated by 594 nucleotides
DDA3937_RS02210: DDA3937_RS02210 - type-1Ba cytolytic delta-endotoxin, at 490,266 to 490,877
_RS02210
DDA3937_RS02215: DDA3937_RS02215 - type-2Aa cytolytic delta-endotoxin, at 490,991 to 491,590
_RS02215
DDA3937_RS02220: DDA3937_RS02220 - delta-endotoxin CytB, at 491,661 to 492,296
_RS02220
DDA3937_RS02225: DDA3937_RS02225 - ABC transporter substrate-binding protein, at 492,891 to 494,423
_RS02225
Position (kb) 491
492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 490.692 kb on + strand, within DDA3937_RS02210 at 490.692 kb on + strand, within DDA3937_RS02210 at 490.693 kb on - strand at 490.738 kb on - strand, within DDA3937_RS02210 at 490.748 kb on + strand, within DDA3937_RS02210 at 490.786 kb on - strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.801 kb on + strand, within DDA3937_RS02210 at 490.801 kb on + strand, within DDA3937_RS02210 at 490.802 kb on - strand, within DDA3937_RS02210 at 490.844 kb on + strand at 490.845 kb on - strand at 490.848 kb on - strand at 490.848 kb on - strand at 490.894 kb on + strand at 490.915 kb on + strand at 490.916 kb on - strand at 490.930 kb on + strand at 490.945 kb on - strand at 490.962 kb on + strand at 490.962 kb on + strand at 490.976 kb on - strand at 490.993 kb on - strand at 491.023 kb on + strand at 491.048 kb on - strand at 491.095 kb on + strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.098 kb on + strand, within DDA3937_RS02215 at 491.098 kb on + strand, within DDA3937_RS02215 at 491.101 kb on + strand, within DDA3937_RS02215 at 491.108 kb on + strand, within DDA3937_RS02215 at 491.109 kb on - strand, within DDA3937_RS02215 at 491.117 kb on + strand, within DDA3937_RS02215 at 491.170 kb on + strand, within DDA3937_RS02215 at 491.171 kb on - strand, within DDA3937_RS02215 at 491.173 kb on + strand, within DDA3937_RS02215 at 491.173 kb on + strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.191 kb on + strand, within DDA3937_RS02215 at 491.216 kb on - strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.220 kb on + strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.221 kb on - strand, within DDA3937_RS02215 at 491.375 kb on + strand, within DDA3937_RS02215 at 491.375 kb on + strand, within DDA3937_RS02215 at 491.375 kb on + strand, within DDA3937_RS02215 at 491.376 kb on - strand, within DDA3937_RS02215 at 491.488 kb on + strand, within DDA3937_RS02215 at 491.531 kb on + strand at 491.560 kb on + strand at 491.581 kb on + strand at 491.581 kb on + strand at 491.581 kb on + strand at 491.601 kb on + strand at 491.602 kb on - strand at 491.602 kb on - strand at 491.602 kb on - strand at 491.621 kb on + strand at 491.624 kb on + strand at 491.625 kb on - strand at 491.625 kb on - strand at 491.627 kb on + strand at 491.710 kb on + strand at 491.711 kb on - strand at 491.714 kb on + strand at 491.714 kb on + strand at 491.714 kb on + strand at 491.714 kb on + strand at 491.715 kb on - strand at 491.715 kb on - strand at 491.715 kb on - strand at 491.784 kb on - strand, within DDA3937_RS02220 at 491.843 kb on - strand, within DDA3937_RS02220 at 491.843 kb on - strand, within DDA3937_RS02220 at 491.846 kb on + strand, within DDA3937_RS02220 at 491.846 kb on + strand, within DDA3937_RS02220 at 491.846 kb on + strand, within DDA3937_RS02220 at 491.847 kb on - strand, within DDA3937_RS02220 at 491.847 kb on - strand, within DDA3937_RS02220 at 491.847 kb on - strand, within DDA3937_RS02220 at 491.848 kb on + strand, within DDA3937_RS02220 at 491.848 kb on + strand, within DDA3937_RS02220 at 491.848 kb on + strand at 491.848 kb on + strand, within DDA3937_RS02220 at 491.848 kb on + strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand, within DDA3937_RS02220 at 491.849 kb on - strand at 491.918 kb on + strand, within DDA3937_RS02220 at 491.919 kb on - strand, within DDA3937_RS02220 at 491.953 kb on + strand, within DDA3937_RS02220 at 492.008 kb on + strand, within DDA3937_RS02220 at 492.075 kb on + strand, within DDA3937_RS02220 at 492.163 kb on - strand, within DDA3937_RS02220 at 492.194 kb on - strand, within DDA3937_RS02220 at 492.194 kb on - strand, within DDA3937_RS02220 at 492.214 kb on - strand, within DDA3937_RS02220 at 492.374 kb on + strand at 492.472 kb on - strand at 492.473 kb on + strand at 492.807 kb on - strand at 492.928 kb on + strand at 492.960 kb on + strand at 492.961 kb on - strand at 492.961 kb on - strand at 492.962 kb on + strand at 492.962 kb on + strand at 492.963 kb on - strand at 492.966 kb on + strand at 493.040 kb on + strand at 493.040 kb on + strand at 493.041 kb on - strand at 493.041 kb on - strand at 493.041 kb on - strand at 493.041 kb on - strand at 493.082 kb on + strand, within DDA3937_RS02225 at 493.091 kb on - strand, within DDA3937_RS02225 at 493.092 kb on + strand, within DDA3937_RS02225 at 493.093 kb on - strand, within DDA3937_RS02225 at 493.093 kb on - strand, within DDA3937_RS02225 at 493.116 kb on + strand, within DDA3937_RS02225 at 493.116 kb on + strand, within DDA3937_RS02225 at 493.119 kb on - strand, within DDA3937_RS02225 at 493.163 kb on - strand, within DDA3937_RS02225 at 493.163 kb on - strand, within DDA3937_RS02225 at 493.209 kb on - strand, within DDA3937_RS02225 at 493.233 kb on + strand, within DDA3937_RS02225 at 493.233 kb on + strand, within DDA3937_RS02225 at 493.233 kb on + strand, within DDA3937_RS02225 at 493.233 kb on + strand, within DDA3937_RS02225 at 493.233 kb on + strand, within DDA3937_RS02225 at 493.234 kb on - strand, within DDA3937_RS02225 at 493.234 kb on - strand, within DDA3937_RS02225 at 493.234 kb on - strand, within DDA3937_RS02225
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 490,692 + DDA3937_RS02210 0.70 -0.5 490,692 + DDA3937_RS02210 0.70 -0.3 490,693 - +0.7 490,738 - DDA3937_RS02210 0.77 +1.2 490,748 + DDA3937_RS02210 0.79 +1.9 490,786 - DDA3937_RS02210 0.85 -0.9 490,798 + DDA3937_RS02210 0.87 +0.2 490,798 + DDA3937_RS02210 0.87 -0.1 490,798 + DDA3937_RS02210 0.87 -2.7 490,801 + DDA3937_RS02210 0.87 -0.1 490,801 + DDA3937_RS02210 0.87 -0.3 490,802 - DDA3937_RS02210 0.88 -0.1 490,844 + -1.6 490,845 - +1.2 490,848 - -0.8 490,848 - -1.2 490,894 + -1.8 490,915 + -1.3 490,916 - +0.0 490,930 + -0.3 490,945 - +0.7 490,962 + -3.2 490,962 + -1.9 490,976 - -0.7 490,993 - -1.3 491,023 + -0.2 491,048 - +0.2 491,095 + DDA3937_RS02215 0.17 -1.4 491,096 - DDA3937_RS02215 0.17 -0.3 491,096 - DDA3937_RS02215 0.17 -1.5 491,096 - DDA3937_RS02215 0.17 -1.0 491,098 + DDA3937_RS02215 0.18 -0.8 491,098 + DDA3937_RS02215 0.18 -0.1 491,101 + DDA3937_RS02215 0.18 -0.2 491,108 + DDA3937_RS02215 0.20 +0.9 491,109 - DDA3937_RS02215 0.20 +1.8 491,117 + DDA3937_RS02215 0.21 +1.1 491,170 + DDA3937_RS02215 0.30 -2.2 491,171 - DDA3937_RS02215 0.30 +1.2 491,173 + DDA3937_RS02215 0.30 -0.6 491,173 + DDA3937_RS02215 0.30 -3.0 491,176 - DDA3937_RS02215 0.31 +0.1 491,176 - DDA3937_RS02215 0.31 -1.7 491,176 - DDA3937_RS02215 0.31 -1.2 491,176 - DDA3937_RS02215 0.31 -2.5 491,176 - DDA3937_RS02215 0.31 -0.1 491,191 + DDA3937_RS02215 0.33 -1.4 491,216 - DDA3937_RS02215 0.38 -1.3 491,220 + DDA3937_RS02215 0.38 -1.5 491,220 + DDA3937_RS02215 0.38 -2.2 491,220 + DDA3937_RS02215 0.38 +1.8 491,220 + DDA3937_RS02215 0.38 +1.0 491,221 - DDA3937_RS02215 0.38 -0.0 491,221 - DDA3937_RS02215 0.38 -0.1 491,221 - DDA3937_RS02215 0.38 -0.5 491,221 - DDA3937_RS02215 0.38 +0.5 491,375 + DDA3937_RS02215 0.64 -1.2 491,375 + DDA3937_RS02215 0.64 -2.6 491,375 + DDA3937_RS02215 0.64 -0.9 491,376 - DDA3937_RS02215 0.64 -0.6 491,488 + DDA3937_RS02215 0.83 -2.3 491,531 + -2.7 491,560 + -2.6 491,581 + -0.8 491,581 + -0.8 491,581 + -1.8 491,601 + -0.2 491,602 - -0.7 491,602 - +0.4 491,602 - -0.3 491,621 + -2.0 491,624 + +0.2 491,625 - +1.7 491,625 - -1.6 491,627 + -0.6 491,710 + +0.2 491,711 - +1.2 491,714 + -0.6 491,714 + +0.2 491,714 + -0.9 491,714 + +2.6 491,715 - -1.1 491,715 - +0.2 491,715 - -1.3 491,784 - DDA3937_RS02220 0.19 +1.6 491,843 - DDA3937_RS02220 0.29 -0.5 491,843 - DDA3937_RS02220 0.29 -0.4 491,846 + DDA3937_RS02220 0.29 -1.8 491,846 + DDA3937_RS02220 0.29 -2.1 491,846 + DDA3937_RS02220 0.29 -0.9 491,847 - DDA3937_RS02220 0.29 -0.0 491,847 - DDA3937_RS02220 0.29 -0.4 491,847 - DDA3937_RS02220 0.29 -0.9 491,848 + DDA3937_RS02220 0.29 +0.0 491,848 + DDA3937_RS02220 0.29 -0.9 491,848 + +0.2 491,848 + DDA3937_RS02220 0.29 -1.1 491,848 + DDA3937_RS02220 0.29 -0.6 491,849 - DDA3937_RS02220 0.30 +0.8 491,849 - DDA3937_RS02220 0.30 +0.1 491,849 - DDA3937_RS02220 0.30 -0.2 491,849 - DDA3937_RS02220 0.30 +1.8 491,849 - +0.9 491,918 + DDA3937_RS02220 0.40 +0.6 491,919 - DDA3937_RS02220 0.41 -1.4 491,953 + DDA3937_RS02220 0.46 +0.9 492,008 + DDA3937_RS02220 0.55 +0.2 492,075 + DDA3937_RS02220 0.65 -0.7 492,163 - DDA3937_RS02220 0.79 -2.7 492,194 - DDA3937_RS02220 0.84 +0.8 492,194 - DDA3937_RS02220 0.84 -1.5 492,214 - DDA3937_RS02220 0.87 -0.9 492,374 + -0.7 492,472 - -0.4 492,473 + +0.0 492,807 - -1.2 492,928 + +3.2 492,960 + +0.2 492,961 - -0.9 492,961 - -0.8 492,962 + -0.4 492,962 + -1.2 492,963 - +1.6 492,966 + -2.9 493,040 + -0.6 493,040 + +1.2 493,041 - +0.2 493,041 - +0.9 493,041 - -1.3 493,041 - -1.0 493,082 + DDA3937_RS02225 0.12 -0.7 493,091 - DDA3937_RS02225 0.13 +0.6 493,092 + DDA3937_RS02225 0.13 +0.8 493,093 - DDA3937_RS02225 0.13 -0.5 493,093 - DDA3937_RS02225 0.13 -1.4 493,116 + DDA3937_RS02225 0.15 +0.4 493,116 + DDA3937_RS02225 0.15 +0.4 493,119 - DDA3937_RS02225 0.15 -0.4 493,163 - DDA3937_RS02225 0.18 -0.3 493,163 - DDA3937_RS02225 0.18 -1.5 493,209 - DDA3937_RS02225 0.21 -0.7 493,233 + DDA3937_RS02225 0.22 -0.3 493,233 + DDA3937_RS02225 0.22 +0.5 493,233 + DDA3937_RS02225 0.22 -0.4 493,233 + DDA3937_RS02225 0.22 -1.3 493,233 + DDA3937_RS02225 0.22 +1.2 493,234 - DDA3937_RS02225 0.22 +0.8 493,234 - DDA3937_RS02225 0.22 -1.8 493,234 - DDA3937_RS02225 0.22 -1.2
Or see this region's nucleotide sequence