Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01930

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01925 and DDA3937_RS01930 are separated by 411 nucleotidesDDA3937_RS01930 and DDA3937_RS01935 are separated by 220 nucleotides DDA3937_RS01925: DDA3937_RS01925 - aspartate carbamoyltransferase, at 431,990 to 432,925 _RS01925 DDA3937_RS01930: DDA3937_RS01930 - YhcH/YjgK/YiaL family protein, at 433,337 to 433,804 _RS01930 DDA3937_RS01935: DDA3937_RS01935 - 6-phospho-beta-glucosidase, at 434,025 to 435,461 _RS01935 Position (kb) 433 434Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 432.369 kb on + strand, within DDA3937_RS01925at 432.369 kb on + strand, within DDA3937_RS01925at 432.369 kb on + strand, within DDA3937_RS01925at 432.369 kb on + strand, within DDA3937_RS01925at 432.370 kb on - strand, within DDA3937_RS01925at 432.370 kb on - strand, within DDA3937_RS01925at 432.370 kb on - strand, within DDA3937_RS01925at 432.370 kb on - strand, within DDA3937_RS01925at 432.430 kb on - strand, within DDA3937_RS01925at 432.630 kb on + strand, within DDA3937_RS01925at 432.630 kb on + strandat 432.630 kb on + strand, within DDA3937_RS01925at 432.630 kb on + strand, within DDA3937_RS01925at 432.630 kb on + strand, within DDA3937_RS01925at 432.630 kb on + strand, within DDA3937_RS01925at 432.630 kb on + strand, within DDA3937_RS01925at 432.630 kb on + strand, within DDA3937_RS01925at 432.630 kb on + strand, within DDA3937_RS01925at 432.630 kb on + strand, within DDA3937_RS01925at 432.630 kb on + strand, within DDA3937_RS01925at 432.631 kb on - strand, within DDA3937_RS01925at 432.631 kb on - strand, within DDA3937_RS01925at 432.631 kb on - strand, within DDA3937_RS01925at 432.631 kb on - strand, within DDA3937_RS01925at 432.631 kb on - strand, within DDA3937_RS01925at 432.631 kb on - strand, within DDA3937_RS01925at 432.631 kb on - strand, within DDA3937_RS01925at 432.907 kb on + strandat 432.907 kb on + strandat 432.907 kb on + strandat 432.907 kb on + strandat 432.907 kb on + strandat 432.907 kb on + strandat 432.907 kb on + strandat 432.908 kb on - strandat 432.908 kb on - strandat 432.908 kb on - strandat 432.909 kb on + strandat 432.910 kb on - strandat 432.911 kb on + strandat 433.103 kb on + strandat 433.104 kb on - strandat 433.104 kb on - strandat 433.137 kb on + strandat 433.288 kb on + strandat 433.288 kb on + strandat 433.324 kb on + strandat 433.376 kb on + strandat 433.377 kb on - strandat 433.409 kb on + strand, within DDA3937_RS01930at 433.409 kb on + strand, within DDA3937_RS01930at 433.409 kb on + strand, within DDA3937_RS01930at 433.409 kb on + strand, within DDA3937_RS01930at 433.409 kb on + strand, within DDA3937_RS01930at 433.410 kb on - strand, within DDA3937_RS01930at 433.410 kb on - strand, within DDA3937_RS01930at 433.410 kb on - strand, within DDA3937_RS01930at 433.410 kb on - strand, within DDA3937_RS01930at 433.423 kb on + strand, within DDA3937_RS01930at 433.423 kb on + strand, within DDA3937_RS01930at 433.423 kb on + strand, within DDA3937_RS01930at 433.423 kb on + strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.426 kb on + strand, within DDA3937_RS01930at 433.468 kb on + strand, within DDA3937_RS01930at 433.469 kb on - strand, within DDA3937_RS01930at 433.529 kb on + strand, within DDA3937_RS01930at 433.529 kb on + strand, within DDA3937_RS01930at 433.541 kb on + strand, within DDA3937_RS01930at 433.542 kb on - strand, within DDA3937_RS01930at 433.542 kb on - strand, within DDA3937_RS01930at 433.607 kb on - strand, within DDA3937_RS01930at 433.761 kb on + strandat 433.761 kb on + strandat 433.761 kb on + strandat 433.761 kb on + strandat 433.761 kb on + strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.789 kb on + strandat 433.789 kb on + strandat 433.910 kb on - strandat 433.910 kb on - strandat 433.933 kb on + strandat 433.933 kb on + strandat 433.933 kb on + strandat 433.975 kb on + strandat 433.976 kb on - strandat 433.976 kb on - strandat 434.024 kb on + strandat 434.024 kb on + strandat 434.065 kb on + strandat 434.193 kb on + strand, within DDA3937_RS01935at 434.220 kb on + strand, within DDA3937_RS01935at 434.220 kb on + strand, within DDA3937_RS01935at 434.221 kb on - strand, within DDA3937_RS01935at 434.231 kb on + strand, within DDA3937_RS01935at 434.231 kb on + strand, within DDA3937_RS01935at 434.231 kb on + strand, within DDA3937_RS01935at 434.231 kb on + strand, within DDA3937_RS01935at 434.232 kb on - strand, within DDA3937_RS01935at 434.232 kb on - strand, within DDA3937_RS01935at 434.232 kb on - strand, within DDA3937_RS01935at 434.232 kb on - strand, within DDA3937_RS01935at 434.232 kb on - strand, within DDA3937_RS01935at 434.446 kb on - strand, within DDA3937_RS01935at 434.446 kb on - strand, within DDA3937_RS01935at 434.533 kb on - strand, within DDA3937_RS01935at 434.555 kb on + strand, within DDA3937_RS01935at 434.555 kb on + strand, within DDA3937_RS01935at 434.556 kb on - strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.647 kb on - strand, within DDA3937_RS01935at 434.647 kb on - strand, within DDA3937_RS01935at 434.647 kb on - strand, within DDA3937_RS01935at 434.752 kb on - strand, within DDA3937_RS01935at 434.752 kb on - strand, within DDA3937_RS01935at 434.752 kb on - strand, within DDA3937_RS01935at 434.754 kb on + strand, within DDA3937_RS01935at 434.754 kb on + strand, within DDA3937_RS01935at 434.755 kb on - strand, within DDA3937_RS01935at 434.755 kb on - strand, within DDA3937_RS01935

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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432,369 + DDA3937_RS01925 0.40 -1.1
432,369 + DDA3937_RS01925 0.40 -1.2
432,369 + DDA3937_RS01925 0.40 -1.0
432,369 + DDA3937_RS01925 0.40 +0.1
432,370 - DDA3937_RS01925 0.41 -0.7
432,370 - DDA3937_RS01925 0.41 -1.8
432,370 - DDA3937_RS01925 0.41 -0.8
432,370 - DDA3937_RS01925 0.41 -0.5
432,430 - DDA3937_RS01925 0.47 -1.7
432,630 + DDA3937_RS01925 0.68 -2.6
432,630 + -0.3
432,630 + DDA3937_RS01925 0.68 -1.7
432,630 + DDA3937_RS01925 0.68 +0.3
432,630 + DDA3937_RS01925 0.68 +0.5
432,630 + DDA3937_RS01925 0.68 -2.3
432,630 + DDA3937_RS01925 0.68 -0.5
432,630 + DDA3937_RS01925 0.68 -0.8
432,630 + DDA3937_RS01925 0.68 +0.7
432,630 + DDA3937_RS01925 0.68 -1.6
432,630 + DDA3937_RS01925 0.68 -0.9
432,631 - DDA3937_RS01925 0.68 -0.7
432,631 - DDA3937_RS01925 0.68 -0.3
432,631 - DDA3937_RS01925 0.68 -0.9
432,631 - DDA3937_RS01925 0.68 -1.4
432,631 - DDA3937_RS01925 0.68 -2.0
432,631 - DDA3937_RS01925 0.68 -1.4
432,631 - DDA3937_RS01925 0.68 -0.7
432,907 + -1.0
432,907 + +0.9
432,907 + +0.1
432,907 + -2.2
432,907 + -2.9
432,907 + -0.8
432,907 + +0.4
432,908 - -0.7
432,908 - -0.6
432,908 - -1.6
432,909 + +0.3
432,910 - -0.7
432,911 + -0.8
433,103 + -0.3
433,104 - +0.1
433,104 - -1.5
433,137 + -1.4
433,288 + +0.1
433,288 + -1.1
433,324 + -1.0
433,376 + +0.0
433,377 - -0.6
433,409 + DDA3937_RS01930 0.15 -0.9
433,409 + DDA3937_RS01930 0.15 -2.2
433,409 + DDA3937_RS01930 0.15 -0.5
433,409 + DDA3937_RS01930 0.15 -1.8
433,409 + DDA3937_RS01930 0.15 +0.3
433,410 - DDA3937_RS01930 0.16 -0.3
433,410 - DDA3937_RS01930 0.16 -1.7
433,410 - DDA3937_RS01930 0.16 +0.6
433,410 - DDA3937_RS01930 0.16 -0.7
433,423 + DDA3937_RS01930 0.18 -1.1
433,423 + DDA3937_RS01930 0.18 -0.5
433,423 + DDA3937_RS01930 0.18 -1.3
433,423 + DDA3937_RS01930 0.18 +0.5
433,424 - DDA3937_RS01930 0.19 +0.4
433,424 - DDA3937_RS01930 0.19 -0.9
433,424 - DDA3937_RS01930 0.19 +0.3
433,424 - DDA3937_RS01930 0.19 -1.0
433,424 - DDA3937_RS01930 0.19 -1.3
433,424 - DDA3937_RS01930 0.19 +0.1
433,426 + DDA3937_RS01930 0.19 +0.7
433,468 + DDA3937_RS01930 0.28 -2.6
433,469 - DDA3937_RS01930 0.28 -1.3
433,529 + DDA3937_RS01930 0.41 -0.7
433,529 + DDA3937_RS01930 0.41 -1.4
433,541 + DDA3937_RS01930 0.44 -0.4
433,542 - DDA3937_RS01930 0.44 -1.7
433,542 - DDA3937_RS01930 0.44 -0.2
433,607 - DDA3937_RS01930 0.58 +2.7
433,761 + +0.7
433,761 + +1.0
433,761 + +1.1
433,761 + -1.8
433,761 + -0.1
433,762 - -0.7
433,762 - +0.7
433,762 - -0.1
433,762 - -0.1
433,762 - -0.5
433,762 - -0.7
433,762 - -0.6
433,789 + +0.8
433,789 + -0.6
433,910 - -2.2
433,910 - -0.7
433,933 + +1.5
433,933 + -2.8
433,933 + -0.6
433,975 + -0.9
433,976 - -0.9
433,976 - -0.4
434,024 + -0.2
434,024 + +1.3
434,065 + -0.1
434,193 + DDA3937_RS01935 0.12 -2.0
434,220 + DDA3937_RS01935 0.14 -2.1
434,220 + DDA3937_RS01935 0.14 +0.2
434,221 - DDA3937_RS01935 0.14 -1.3
434,231 + DDA3937_RS01935 0.14 -0.6
434,231 + DDA3937_RS01935 0.14 +3.3
434,231 + DDA3937_RS01935 0.14 -0.4
434,231 + DDA3937_RS01935 0.14 +0.8
434,232 - DDA3937_RS01935 0.14 -3.0
434,232 - DDA3937_RS01935 0.14 +2.4
434,232 - DDA3937_RS01935 0.14 -0.9
434,232 - DDA3937_RS01935 0.14 +0.6
434,232 - DDA3937_RS01935 0.14 +0.7
434,446 - DDA3937_RS01935 0.29 -0.3
434,446 - DDA3937_RS01935 0.29 -0.9
434,533 - DDA3937_RS01935 0.35 +0.2
434,555 + DDA3937_RS01935 0.37 -0.9
434,555 + DDA3937_RS01935 0.37 -0.3
434,556 - DDA3937_RS01935 0.37 +0.2
434,646 + DDA3937_RS01935 0.43 -0.1
434,646 + DDA3937_RS01935 0.43 -1.6
434,646 + DDA3937_RS01935 0.43 -0.3
434,646 + DDA3937_RS01935 0.43 -2.0
434,646 + DDA3937_RS01935 0.43 -0.3
434,646 + DDA3937_RS01935 0.43 +1.2
434,646 + DDA3937_RS01935 0.43 -0.4
434,647 - DDA3937_RS01935 0.43 -0.2
434,647 - DDA3937_RS01935 0.43 -0.2
434,647 - DDA3937_RS01935 0.43 +0.7
434,752 - DDA3937_RS01935 0.51 -1.0
434,752 - DDA3937_RS01935 0.51 -0.1
434,752 - DDA3937_RS01935 0.51 -0.2
434,754 + DDA3937_RS01935 0.51 +0.4
434,754 + DDA3937_RS01935 0.51 -1.2
434,755 - DDA3937_RS01935 0.51 -0.1
434,755 - DDA3937_RS01935 0.51 -2.3

Or see this region's nucleotide sequence