Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00675 and DDA3937_RS00680 are separated by 6 nucleotides DDA3937_RS00680 and DDA3937_RS00685 are separated by 70 nucleotides DDA3937_RS00685 and DDA3937_RS00690 are separated by 130 nucleotides
DDA3937_RS00675: DDA3937_RS00675 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG, at 155,467 to 156,237
_RS00675
DDA3937_RS00680: DDA3937_RS00680 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF, at 156,244 to 156,945
_RS00680
DDA3937_RS00685: DDA3937_RS00685 - PLP-dependent aminotransferase family protein, at 157,016 to 158,200
_RS00685
DDA3937_RS00690: DDA3937_RS00690 - MCP four helix bundle domain-containing protein, at 158,331 to 159,968
_RS00690
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.142 kb on + strand, within DDA3937_RS00675 at 156.142 kb on + strand, within DDA3937_RS00675 at 156.142 kb on + strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.150 kb on - strand, within DDA3937_RS00675 at 156.195 kb on + strand at 156.195 kb on + strand at 156.220 kb on + strand at 156.221 kb on - strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.243 kb on + strand at 156.244 kb on - strand at 156.244 kb on - strand at 156.244 kb on - strand at 156.244 kb on - strand at 156.275 kb on - strand at 156.312 kb on + strand at 156.592 kb on + strand, within DDA3937_RS00680 at 156.593 kb on - strand, within DDA3937_RS00680 at 156.593 kb on - strand, within DDA3937_RS00680 at 156.593 kb on - strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.613 kb on + strand, within DDA3937_RS00680 at 156.614 kb on - strand, within DDA3937_RS00680 at 156.853 kb on + strand, within DDA3937_RS00680 at 156.854 kb on - strand, within DDA3937_RS00680 at 156.905 kb on + strand at 156.983 kb on - strand at 157.046 kb on - strand at 157.252 kb on + strand, within DDA3937_RS00685 at 157.369 kb on + strand, within DDA3937_RS00685 at 157.380 kb on + strand, within DDA3937_RS00685 at 157.394 kb on + strand, within DDA3937_RS00685 at 157.394 kb on + strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.395 kb on - strand, within DDA3937_RS00685 at 157.407 kb on + strand, within DDA3937_RS00685 at 157.437 kb on + strand, within DDA3937_RS00685 at 157.437 kb on + strand, within DDA3937_RS00685 at 157.438 kb on - strand, within DDA3937_RS00685 at 157.438 kb on - strand, within DDA3937_RS00685 at 157.521 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.719 kb on - strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.720 kb on + strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.721 kb on - strand, within DDA3937_RS00685 at 157.796 kb on - strand, within DDA3937_RS00685 at 157.796 kb on - strand, within DDA3937_RS00685 at 157.852 kb on + strand, within DDA3937_RS00685 at 157.862 kb on + strand, within DDA3937_RS00685 at 157.862 kb on + strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.863 kb on - strand, within DDA3937_RS00685 at 157.865 kb on + strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 157.866 kb on - strand, within DDA3937_RS00685 at 158.036 kb on - strand, within DDA3937_RS00685 at 158.251 kb on + strand at 158.251 kb on + strand at 158.367 kb on + strand at 158.549 kb on + strand, within DDA3937_RS00690 at 158.549 kb on + strand, within DDA3937_RS00690 at 158.592 kb on + strand, within DDA3937_RS00690 at 158.593 kb on - strand, within DDA3937_RS00690 at 158.593 kb on - strand, within DDA3937_RS00690 at 158.593 kb on - strand, within DDA3937_RS00690 at 158.719 kb on - strand, within DDA3937_RS00690 at 158.877 kb on - strand, within DDA3937_RS00690 at 159.015 kb on - strand, within DDA3937_RS00690
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 156,142 + DDA3937_RS00675 0.88 -2.3 156,142 + DDA3937_RS00675 0.88 -1.0 156,142 + DDA3937_RS00675 0.88 -0.4 156,150 - DDA3937_RS00675 0.89 +0.9 156,150 - DDA3937_RS00675 0.89 -0.2 156,150 - DDA3937_RS00675 0.89 -0.5 156,150 - DDA3937_RS00675 0.89 -0.0 156,195 + -0.6 156,195 + -1.7 156,220 + -1.2 156,221 - -0.9 156,243 + -0.2 156,243 + -1.6 156,243 + +1.1 156,243 + -0.1 156,243 + -1.3 156,243 + -0.2 156,243 + -0.3 156,244 - -0.0 156,244 - -0.2 156,244 - -1.4 156,244 - -0.8 156,275 - -0.5 156,312 + +0.1 156,592 + DDA3937_RS00680 0.50 -0.5 156,593 - DDA3937_RS00680 0.50 +0.2 156,593 - DDA3937_RS00680 0.50 -0.8 156,593 - DDA3937_RS00680 0.50 -0.9 156,613 + DDA3937_RS00680 0.53 +1.6 156,613 + DDA3937_RS00680 0.53 -0.1 156,613 + DDA3937_RS00680 0.53 -0.4 156,613 + DDA3937_RS00680 0.53 +0.3 156,614 - DDA3937_RS00680 0.53 +1.0 156,853 + DDA3937_RS00680 0.87 -0.5 156,854 - DDA3937_RS00680 0.87 -0.0 156,905 + -1.6 156,983 - +0.9 157,046 - -0.9 157,252 + DDA3937_RS00685 0.20 -2.1 157,369 + DDA3937_RS00685 0.30 -2.9 157,380 + DDA3937_RS00685 0.31 -1.0 157,394 + DDA3937_RS00685 0.32 -0.0 157,394 + DDA3937_RS00685 0.32 -0.5 157,395 - DDA3937_RS00685 0.32 -1.3 157,395 - DDA3937_RS00685 0.32 -0.5 157,395 - DDA3937_RS00685 0.32 -0.8 157,407 + DDA3937_RS00685 0.33 +0.7 157,437 + DDA3937_RS00685 0.36 -2.9 157,437 + DDA3937_RS00685 0.36 -0.9 157,438 - DDA3937_RS00685 0.36 -0.7 157,438 - DDA3937_RS00685 0.36 -1.8 157,521 - DDA3937_RS00685 0.43 -0.0 157,719 - DDA3937_RS00685 0.59 +1.3 157,719 - DDA3937_RS00685 0.59 +1.0 157,719 - DDA3937_RS00685 0.59 +0.9 157,719 - DDA3937_RS00685 0.59 -1.5 157,719 - DDA3937_RS00685 0.59 -0.7 157,719 - DDA3937_RS00685 0.59 -1.3 157,719 - DDA3937_RS00685 0.59 +1.3 157,720 + DDA3937_RS00685 0.59 -1.6 157,720 + DDA3937_RS00685 0.59 +1.3 157,720 + DDA3937_RS00685 0.59 -0.1 157,721 - DDA3937_RS00685 0.59 -1.8 157,721 - DDA3937_RS00685 0.59 -0.6 157,721 - DDA3937_RS00685 0.59 +0.3 157,721 - DDA3937_RS00685 0.59 -0.3 157,721 - DDA3937_RS00685 0.59 -1.5 157,721 - DDA3937_RS00685 0.59 -0.0 157,721 - DDA3937_RS00685 0.59 -0.0 157,721 - DDA3937_RS00685 0.59 +0.2 157,721 - DDA3937_RS00685 0.59 -0.2 157,796 - DDA3937_RS00685 0.66 -0.8 157,796 - DDA3937_RS00685 0.66 -0.1 157,852 + DDA3937_RS00685 0.71 +1.3 157,862 + DDA3937_RS00685 0.71 -0.0 157,862 + DDA3937_RS00685 0.71 -1.5 157,863 - DDA3937_RS00685 0.71 -0.7 157,863 - DDA3937_RS00685 0.71 -0.7 157,863 - DDA3937_RS00685 0.71 +0.3 157,865 + DDA3937_RS00685 0.72 -1.8 157,866 - DDA3937_RS00685 0.72 +1.2 157,866 - DDA3937_RS00685 0.72 -0.8 157,866 - DDA3937_RS00685 0.72 +2.3 158,036 - DDA3937_RS00685 0.86 -0.4 158,251 + -1.2 158,251 + -1.4 158,367 + -0.7 158,549 + DDA3937_RS00690 0.13 +0.3 158,549 + DDA3937_RS00690 0.13 +0.6 158,592 + DDA3937_RS00690 0.16 +1.0 158,593 - DDA3937_RS00690 0.16 +0.4 158,593 - DDA3937_RS00690 0.16 +0.7 158,593 - DDA3937_RS00690 0.16 -0.7 158,719 - DDA3937_RS00690 0.24 -0.6 158,877 - DDA3937_RS00690 0.33 -1.2 159,015 - DDA3937_RS00690 0.42 +1.1
Or see this region's nucleotide sequence