Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00595

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
139,879	+		DDA3937_RS00590	0.28	-0.5
139,880	-		DDA3937_RS00590	0.28	-1.3
139,880	-		DDA3937_RS00590	0.28	-1.6
139,898	+		DDA3937_RS00590	0.30	-1.0
139,898	+		DDA3937_RS00590	0.30	-0.5
139,898	+		DDA3937_RS00590	0.30	-0.4
139,898	+		DDA3937_RS00590	0.30	-2.1
139,899	-		DDA3937_RS00590	0.30	+0.2
139,899	-		DDA3937_RS00590	0.30	-1.9
139,912	-		DDA3937_RS00590	0.31	-0.0
140,028	+		DDA3937_RS00590	0.43	+1.7
140,087	+		DDA3937_RS00590	0.49	+0.2
140,088	-		DDA3937_RS00590	0.49	+1.2
140,088	-		DDA3937_RS00590	0.49	-0.5
140,220	+		DDA3937_RS00590	0.62	+1.6
140,221	-		DDA3937_RS00590	0.62	-0.9
140,238	+		DDA3937_RS00590	0.64	-0.3
140,239	-		DDA3937_RS00590	0.64	-1.3
140,239	-		DDA3937_RS00590	0.64	+0.3
140,239	-		DDA3937_RS00590	0.64	+0.3
140,242	-		DDA3937_RS00590	0.64	+1.1
140,247	+		DDA3937_RS00590	0.65	+0.5
140,315	-		DDA3937_RS00590	0.72	+0.9
140,363	-		DDA3937_RS00590	0.77	+0.7
140,363	-		DDA3937_RS00590	0.77	+1.3
140,439	+		DDA3937_RS00590	0.84	+0.3
140,509	+				+1.3
140,509	+				+0.7
140,509	+				-0.7
140,510	-				+0.1
140,510	-				-0.8
140,510	-				-0.8
140,510	-				-0.3
140,510	-				-1.5
140,514	-				-1.1
140,625	+				+0.5
140,625	+				-0.9
140,625	+				-0.4
140,625	+				-0.2
140,626	-				+0.7
140,626	-				-1.4
140,626	-				-1.6
140,627	+				+1.2
140,628	-				-0.3
140,647	+				+0.0
140,647	+				+0.2
140,647	+				-0.2
140,647	+				-0.5
140,648	-				+1.0
140,648	-				+0.2
140,648	-				-0.3
140,649	+				-0.2
140,649	+				-2.2
140,649	+				-1.1
140,649	+				-0.7
140,650	-				-0.0
140,650	-				-1.9
140,650	-				-1.0
140,650	-				-0.2
140,650	-				-0.3
140,650	-				-0.5
140,650	-				-0.7
140,650	-				+1.1
140,650	-				-1.1
140,650	-				-1.2
140,651	+				-0.4
140,651	+				-0.0
140,651	+				+1.2
140,651	+				-1.6
140,651	+				-0.7
140,651	+				+0.4
140,651	+				-0.7
140,651	+				-0.5
140,652	-				-0.3
140,652	-				-2.7
140,652	-				+0.7
140,657	+				+2.3
140,658	-				+0.6
140,728	-				+0.7
140,824	+				+0.7
140,881	-				-0.7
140,890	+				-0.0
140,903	+				+0.2
140,903	+				-1.4
140,942	+		DDA3937_RS00595	0.12	-0.5
140,942	+				-0.0
140,942	+		DDA3937_RS00595	0.12	-0.5
140,942	+		DDA3937_RS00595	0.12	-0.0
140,942	-		DDA3937_RS00595	0.12	-0.8
140,943	-		DDA3937_RS00595	0.12	-0.5
140,943	-		DDA3937_RS00595	0.12	+0.2
140,943	-		DDA3937_RS00595	0.12	-1.5
140,943	-		DDA3937_RS00595	0.12	-0.9
140,943	-		DDA3937_RS00595	0.12	-0.3
140,943	-		DDA3937_RS00595	0.12	+0.2
140,943	-		DDA3937_RS00595	0.12	-0.5
140,997	+		DDA3937_RS00595	0.16	+0.7
140,997	+		DDA3937_RS00595	0.16	+0.4
140,997	+		DDA3937_RS00595	0.16	-1.1
140,998	-		DDA3937_RS00595	0.16	+0.9
140,998	-		DDA3937_RS00595	0.16	+0.2
140,998	-		DDA3937_RS00595	0.16	-0.8
140,998	-		DDA3937_RS00595	0.16	-0.7
140,998	-		DDA3937_RS00595	0.16	-0.7
140,998	-		DDA3937_RS00595	0.16	-0.4
140,998	-		DDA3937_RS00595	0.16	+0.8
140,998	-		DDA3937_RS00595	0.16	+1.1
141,002	+		DDA3937_RS00595	0.17	-0.7
141,002	+				-0.0
141,003	-		DDA3937_RS00595	0.17	+1.1
141,011	-		DDA3937_RS00595	0.17	-1.2
141,109	-		DDA3937_RS00595	0.25	+0.5
141,109	-		DDA3937_RS00595	0.25	-0.9
141,114	-		DDA3937_RS00595	0.26	-0.2
141,293	+		DDA3937_RS00595	0.40	-0.8
141,294	-		DDA3937_RS00595	0.41	-1.5
141,335	+		DDA3937_RS00595	0.44	-1.5
141,335	+		DDA3937_RS00595	0.44	+0.4
141,335	+		DDA3937_RS00595	0.44	+0.4
141,336	-		DDA3937_RS00595	0.44	-2.2
141,336	-		DDA3937_RS00595	0.44	-0.7
141,430	-		DDA3937_RS00595	0.52	-1.4
141,463	-		DDA3937_RS00595	0.54	-0.7
141,463	-		DDA3937_RS00595	0.54	-1.8
141,463	-		DDA3937_RS00595	0.54	+0.2
141,463	-		DDA3937_RS00595	0.54	+1.0
141,482	+		DDA3937_RS00595	0.56	+0.2
141,483	-		DDA3937_RS00595	0.56	-1.2
141,535	+		DDA3937_RS00595	0.60	-0.6
141,535	+		DDA3937_RS00595	0.60	-1.3
141,536	-		DDA3937_RS00595	0.60	-0.4
141,536	-		DDA3937_RS00595	0.60	-1.8
141,536	-		DDA3937_RS00595	0.60	-0.0
141,549	-		DDA3937_RS00595	0.61	-0.7
141,848	+		DDA3937_RS00595	0.86	+0.6
141,848	+		DDA3937_RS00595	0.86	+1.3
141,848	+		DDA3937_RS00595	0.86	-0.0
141,849	-		DDA3937_RS00595	0.86	+0.1
141,849	-		DDA3937_RS00595	0.86	-2.1
141,849	-		DDA3937_RS00595	0.86	+0.9
141,849	-		DDA3937_RS00595	0.86	-0.0
141,849	-		DDA3937_RS00595	0.86	+1.9
141,911	+				+1.5
141,911	+				+0.2
141,911	+				+0.3
141,911	+				-1.5
141,911	+				-3.1
141,912	-				-0.3
141,914	-				-0.9
141,933	-				-1.2
141,986	+				+0.5
141,986	+				+0.2
141,986	+				-1.2
141,987	-				-0.4
142,287	+		DDA3937_RS00600	0.37	-4.5
142,412	-		DDA3937_RS00600	0.59	-0.7
142,620	-				-2.3
142,621	+				-1.9
142,621	+				-2.5
142,622	-				-1.8
142,622	-				-1.0
142,630	-				-2.2
142,655	+				-1.0
142,807	+				-1.2
142,808	-				-2.1
142,824	+				+1.1
142,825	-				-0.6
142,845	+				-1.2
142,891	+				+0.1
142,892	-				-1.2
142,905	+		DDA3937_RS00605	0.12	+1.0
142,905	+		DDA3937_RS00605	0.12	+0.3
142,950	+		DDA3937_RS00605	0.18	-0.3
142,951	-		DDA3937_RS00605	0.19	+0.3
143,007	+		DDA3937_RS00605	0.27	-0.7
143,007	+		DDA3937_RS00605	0.27	-0.4
143,008	-		DDA3937_RS00605	0.27	+1.3
143,008	-		DDA3937_RS00605	0.27	-0.5