Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00370

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
85,386	+		DDA3937_RS00365	0.19	-0.2
85,422	+		DDA3937_RS00365	0.24	-0.7
85,423	-		DDA3937_RS00365	0.24	+0.9
85,423	-		DDA3937_RS00365	0.24	-2.6
85,423	-		DDA3937_RS00365	0.24	-1.3
85,506	+		DDA3937_RS00365	0.34	-1.3
85,570	-		DDA3937_RS00365	0.42	-0.8
85,570	-				-0.3
85,570	-		DDA3937_RS00365	0.42	-1.2
85,602	+		DDA3937_RS00365	0.46	-0.6
85,602	+		DDA3937_RS00365	0.46	+0.5
85,603	-		DDA3937_RS00365	0.46	-0.6
85,605	-		DDA3937_RS00365	0.46	-0.5
85,605	-		DDA3937_RS00365	0.46	-1.2
85,762	-		DDA3937_RS00365	0.65	-0.7
85,788	+		DDA3937_RS00365	0.68	+0.1
85,789	-		DDA3937_RS00365	0.69	-0.1
85,943	+		DDA3937_RS00365	0.87	+0.5
85,982	+				-1.7
86,013	+				-1.6
86,013	+				-1.7
86,063	+				-0.4
86,064	-				+0.7
86,064	-				+1.4
86,064	-				+0.6
86,064	-				-1.9
86,064	-				-0.7
86,064	-				+0.3
86,064	-				-0.9
86,064	-				-1.0
86,064	-				-1.6
86,064	-				-1.3
86,064	-				-0.4
86,064	-				-0.9
86,064	-				-0.2
86,064	-				-0.6
86,064	-				+0.3
86,064	-				-0.0
86,064	-				-0.2
86,064	-				-0.9
86,064	-				+0.2
86,064	-				-0.0
86,064	-				-0.0
86,064	-				+1.2
86,065	+				-0.1
86,065	+				-1.5
86,065	+				-0.5
86,065	+				-0.4
86,065	+				+0.8
86,065	+				-0.5
86,065	+				-0.8
86,065	+				-0.4
86,065	+				+0.1
86,065	+				-1.5
86,065	+				-0.9
86,065	+				+1.3
86,065	+				+0.5
86,065	+				-1.4
86,065	+				+0.5
86,065	+				-0.6
86,065	+				-0.2
86,065	+				-0.6
86,065	+				+1.3
86,065	+				-1.0
86,065	+				+0.0
86,065	+				-0.1
86,065	+				-1.2
86,065	+				+0.9
86,065	+				+1.3
86,066	-				-0.1
86,066	-				+0.3
86,066	-				+2.3
86,066	-				-1.8
86,066	-				+0.4
86,066	-				-0.3
86,066	-				-0.3
86,066	-				-0.9
86,066	-				-2.2
86,066	-				-1.2
86,066	-				-0.6
86,066	-				-1.2
86,066	-				+0.5
86,066	-				-0.7
86,066	-				+0.3
86,066	-				-0.3
86,066	-				+0.3
86,066	-				-0.9
86,066	-				-0.3
86,066	-				-0.4
86,066	-				+0.0
86,066	-				+0.2
86,068	-				-1.7
86,068	-				-1.7
86,076	+				-0.1
86,076	+				-1.7
86,077	-				-0.5
86,106	+				-0.8
86,208	-				+0.3
86,324	+				-1.4
86,324	+				-1.2
86,324	+				+1.8
86,325	-				-1.4
86,325	-				-0.3
86,328	+				+4.9
86,333	+				-0.3
86,334	-				-0.2
86,335	+				+0.6
86,336	-				-0.7
86,532	+		DDA3937_RS00370	0.15	-0.1
86,713	-		DDA3937_RS00370	0.31	-1.1
86,777	-		DDA3937_RS00370	0.36	-0.1
86,902	+		DDA3937_RS00370	0.46	-0.9
86,902	+		DDA3937_RS00370	0.46	-0.2
86,902	+		DDA3937_RS00370	0.46	-0.6
86,902	+		DDA3937_RS00370	0.46	+1.0
86,903	-		DDA3937_RS00370	0.47	-0.5
86,937	+		DDA3937_RS00370	0.49	+1.3
86,938	-		DDA3937_RS00370	0.50	-0.1
86,973	+		DDA3937_RS00370	0.52	-1.1
86,974	-		DDA3937_RS00370	0.53	-1.8
87,007	+		DDA3937_RS00370	0.55	-1.0
87,007	+		DDA3937_RS00370	0.55	-0.3
87,088	-		DDA3937_RS00370	0.62	-1.5
87,187	-		DDA3937_RS00370	0.71	-0.0
87,223	+		DDA3937_RS00370	0.74	-0.4
87,223	+		DDA3937_RS00370	0.74	-0.6
87,224	-		DDA3937_RS00370	0.74	-0.0
87,231	+		DDA3937_RS00370	0.74	-1.0
87,232	-		DDA3937_RS00370	0.74	-0.0
87,232	-		DDA3937_RS00370	0.74	+0.0
87,232	-		DDA3937_RS00370	0.74	+0.4
87,283	-		DDA3937_RS00370	0.79	-2.2
87,283	-		DDA3937_RS00370	0.79	+0.1
87,283	-		DDA3937_RS00370	0.79	-0.6
87,294	+		DDA3937_RS00370	0.80	+0.5
87,294	+		DDA3937_RS00370	0.80	-0.9
87,294	+		DDA3937_RS00370	0.80	+1.6
87,295	-		DDA3937_RS00370	0.80	-0.5
87,295	-		DDA3937_RS00370	0.80	-1.0
87,295	-		DDA3937_RS00370	0.80	-1.8
87,295	-		DDA3937_RS00370	0.80	-0.3
87,295	-		DDA3937_RS00370	0.80	-1.0
87,303	+		DDA3937_RS00370	0.80	-0.1
87,335	+		DDA3937_RS00370	0.83	-0.7
87,400	+		DDA3937_RS00370	0.89	+1.1
87,400	+		DDA3937_RS00370	0.89	-2.3
87,400	+		DDA3937_RS00370	0.89	+1.9
87,513	+				+0.2
87,536	-				-0.3
87,549	-				-0.9
87,553	+				+0.1
87,553	+				-1.9
87,553	+				-0.0
87,553	+				+1.0
87,555	+				-0.2
87,555	+				-1.5
87,556	-				-1.6
87,568	+				-1.2
87,568	+				-0.7
87,578	-				-2.0
87,578	-				-0.9
87,661	-				+0.3
87,697	+				-0.4
87,697	+				-0.0
87,697	+				+1.3
87,698	-				+0.2
87,698	-				+1.0
87,736	-				-0.4
87,740	+				-3.3
87,740	+				+1.0
87,740	+				+0.3
87,741	-				+0.7
87,741	-				-0.7
87,759	+				+0.3
87,760	-				-1.0
87,760	-				-0.3
87,760	-				-1.2
87,760	-				-0.3
87,760	-				-1.5
87,761	+				-0.4
87,761	+				-0.0
87,761	+				-0.8
87,761	+				-1.3
87,762	-				-0.5
87,762	-				-1.0
87,794	-				-0.8
87,853	+				-0.2
87,853	+				+3.4
87,854	-				-0.4
87,854	-				-1.2
87,854	-				-0.9
87,854	-				-0.6
88,010	+		DDA3937_RS00375	0.31	-1.0
88,010	+		DDA3937_RS00375	0.31	-0.3
88,010	+		DDA3937_RS00375	0.31	-0.1
88,011	-		DDA3937_RS00375	0.31	-0.0
88,011	-		DDA3937_RS00375	0.31	-0.5
88,011	-		DDA3937_RS00375	0.31	-1.2
88,082	-		DDA3937_RS00375	0.41	-1.1
88,082	-		DDA3937_RS00375	0.41	-0.4
88,100	+		DDA3937_RS00375	0.44	+0.5
88,101	-		DDA3937_RS00375	0.44	+0.9
88,131	+		DDA3937_RS00375	0.48	+2.8
88,132	-		DDA3937_RS00375	0.49	-0.7
88,289	+		DDA3937_RS00375	0.71	-0.5
88,289	+		DDA3937_RS00375	0.71	+0.2
88,289	+		DDA3937_RS00375	0.71	-1.3
88,289	+		DDA3937_RS00375	0.71	-1.1
88,290	-		DDA3937_RS00375	0.71	+0.3
88,340	+		DDA3937_RS00375	0.78	+0.3
88,460	+				+2.7
88,460	+				-0.2
88,460	+				-0.5
88,460	+				-0.4
88,460	+				+1.8
88,461	-				+0.4
88,483	+				-0.3
88,484	-				+0.1
88,487	+				-0.0
88,487	+				-1.1
88,487	+				-0.2
88,488	-				+0.7
88,488	-				-0.6
88,488	-				-1.6
88,488	-				+0.3
88,488	-				-0.7
88,488	-				-0.2
88,488	-				-0.1
88,488	-				-0.0
88,488	-				+0.7
88,488	-				-0.0
88,517	-				-0.6