Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00045

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
8,650	+				-0.4
8,650	+				+0.1
8,651	-				-1.3
8,651	-				-1.4
8,862	+		DDA3937_RS00040	0.23	-1.3
8,938	-		DDA3937_RS00040	0.31	-0.8
9,065	+		DDA3937_RS00040	0.44	-0.5
9,066	-				+1.3
9,151	-		DDA3937_RS00040	0.53	+0.7
9,180	+		DDA3937_RS00040	0.56	-1.7
9,180	+		DDA3937_RS00040	0.56	+1.6
9,197	+		DDA3937_RS00040	0.58	-0.5
9,197	+		DDA3937_RS00040	0.58	-0.6
9,197	+		DDA3937_RS00040	0.58	-0.5
9,197	+		DDA3937_RS00040	0.58	-2.3
9,197	+		DDA3937_RS00040	0.58	-0.8
9,197	+		DDA3937_RS00040	0.58	-0.7
9,198	-		DDA3937_RS00040	0.58	+0.6
9,212	-		DDA3937_RS00040	0.59	-0.8
9,212	-		DDA3937_RS00040	0.59	+0.3
9,227	+		DDA3937_RS00040	0.61	-1.0
9,227	+		DDA3937_RS00040	0.61	-0.3
9,227	+		DDA3937_RS00040	0.61	-0.8
9,227	+		DDA3937_RS00040	0.61	-1.3
9,227	+		DDA3937_RS00040	0.61	-0.5
9,228	-		DDA3937_RS00040	0.61	-2.2
9,228	-		DDA3937_RS00040	0.61	+1.1
9,228	-		DDA3937_RS00040	0.61	-0.8
9,229	+		DDA3937_RS00040	0.61	-0.8
9,229	+		DDA3937_RS00040	0.61	-1.0
9,229	+		DDA3937_RS00040	0.61	-1.3
9,229	+		DDA3937_RS00040	0.61	+0.1
9,229	+		DDA3937_RS00040	0.61	-0.6
9,229	+		DDA3937_RS00040	0.61	+0.4
9,229	+		DDA3937_RS00040	0.61	-1.4
9,229	+		DDA3937_RS00040	0.61	-0.3
9,229	+		DDA3937_RS00040	0.61	-1.2
9,229	+		DDA3937_RS00040	0.61	-0.7
9,230	-		DDA3937_RS00040	0.61	-0.2
9,230	-		DDA3937_RS00040	0.61	-0.4
9,230	-		DDA3937_RS00040	0.61	+0.3
9,230	-		DDA3937_RS00040	0.61	-0.4
9,230	-		DDA3937_RS00040	0.61	-0.7
9,230	-		DDA3937_RS00040	0.61	-0.1
9,230	-		DDA3937_RS00040	0.61	+0.7
9,230	-				-0.0
9,230	-		DDA3937_RS00040	0.61	-0.8
9,230	-		DDA3937_RS00040	0.61	-0.6
9,233	+		DDA3937_RS00040	0.62	-0.0
9,233	+		DDA3937_RS00040	0.62	+0.3
9,233	+		DDA3937_RS00040	0.62	+0.6
9,233	+		DDA3937_RS00040	0.62	+0.8
9,233	+		DDA3937_RS00040	0.62	-0.0
9,233	+		DDA3937_RS00040	0.62	-1.1
9,233	+		DDA3937_RS00040	0.62	-0.7
9,234	-		DDA3937_RS00040	0.62	-1.3
9,234	-				+1.7
9,286	+		DDA3937_RS00040	0.67	+0.7
9,287	-		DDA3937_RS00040	0.67	-0.9
9,287	-		DDA3937_RS00040	0.67	+0.1
9,287	-		DDA3937_RS00040	0.67	-0.5
9,287	-		DDA3937_RS00040	0.67	-0.9
9,305	+		DDA3937_RS00040	0.69	-0.9
9,305	+		DDA3937_RS00040	0.69	-1.0
9,305	+		DDA3937_RS00040	0.69	-2.3
9,306	-		DDA3937_RS00040	0.69	-2.4
9,351	+		DDA3937_RS00040	0.74	-1.1
9,351	+		DDA3937_RS00040	0.74	-0.7
9,352	-		DDA3937_RS00040	0.74	-1.1
9,352	-		DDA3937_RS00040	0.74	-0.2
9,352	-		DDA3937_RS00040	0.74	-1.4
9,352	-		DDA3937_RS00040	0.74	-1.0
9,392	+		DDA3937_RS00040	0.78	-1.3
9,471	+		DDA3937_RS00040	0.86	-0.7
9,511	+				+1.7
9,511	+				-0.5
9,512	-				+0.7
9,533	+				-1.3
9,533	+				-1.6
9,533	+				+3.4
9,534	-				-0.5
9,534	-				-1.5
9,534	-				+0.0
9,534	-				-1.9
9,534	-				-0.1
9,536	+				-0.3
9,536	+				-0.6
9,537	-				+0.6
9,537	-				+0.5
9,583	-				-0.8
9,586	+				+1.0
9,586	+				-0.4
9,586	+				-0.3
9,587	-				-0.1
9,587	-				-0.3
9,598	+				-1.4
9,599	-				+0.1
9,599	-				-0.8
9,599	-				-0.9
9,599	-				+0.7
9,603	-				-1.0
9,603	-				-0.3
9,651	+				-0.7
9,651	+				-1.6
9,651	+				-0.2
9,651	+				-1.0
9,652	-				+0.7
9,652	-				+0.7
9,652	-				-1.6
9,712	-				-1.2
9,799	+		DDA3937_RS00045	0.19	-1.2
9,799	+		DDA3937_RS00045	0.19	-1.1
9,799	+		DDA3937_RS00045	0.19	-1.3
9,800	-		DDA3937_RS00045	0.19	-0.0
9,828	+		DDA3937_RS00045	0.22	-0.6
9,838	-		DDA3937_RS00045	0.23	-0.7
9,917	+		DDA3937_RS00045	0.32	+0.7
9,918	-		DDA3937_RS00045	0.32	+0.5
9,922	-		DDA3937_RS00045	0.33	-0.1
10,083	+		DDA3937_RS00045	0.51	-1.0
10,084	-		DDA3937_RS00045	0.51	-1.3
10,255	-		DDA3937_RS00045	0.70	+1.3
10,337	+		DDA3937_RS00045	0.80	-1.7
10,516	+				+0.4
10,516	+				+1.2
10,516	+				-0.8
10,516	+				-0.5
10,517	-				-0.0
10,517	-				+0.7
10,517	-				-0.3
10,517	-				+1.9
10,519	+				-0.0
10,519	+				-0.2
10,520	-				-1.9
10,520	-				+1.2
10,535	+				-0.9
10,535	+				-1.1
10,536	-				+0.5
10,539	-				+1.6
10,539	-				-1.5
10,539	-				-1.0
10,549	+				-1.4
10,549	+				-0.6
10,549	+				-1.7
10,550	-				-1.1
10,550	-				+0.6
10,550	-				-0.3
10,550	-				-1.4
10,550	-				-0.2
10,550	-				-0.6
10,550	-				+0.5
10,550	-				-0.0
10,550	-				-0.1
10,552	+				-0.9
10,552	+				-0.5
10,552	+				+0.7
10,553	-				-1.1
10,553	-				-2.6
10,580	+				-1.2
10,581	-				-0.0
10,624	-				-0.8
10,624	-				+1.9
10,624	-				-1.5
10,651	+				+0.8
10,651	+				-0.7
10,652	-				-1.0
10,652	-				-1.4
10,652	-				-1.9
10,652	-				-1.5
10,706	+		DDA3937_RS00050	0.11	-2.0
10,706	+		DDA3937_RS00050	0.11	-1.5
10,706	+		DDA3937_RS00050	0.11	-1.7
10,706	+		DDA3937_RS00050	0.11	-2.3
10,707	-		DDA3937_RS00050	0.11	-1.8
10,707	-		DDA3937_RS00050	0.11	+0.8
10,707	-		DDA3937_RS00050	0.11	-1.5
10,707	-		DDA3937_RS00050	0.11	-0.9
10,707	-		DDA3937_RS00050	0.11	-0.0
10,707	-		DDA3937_RS00050	0.11	-1.2
10,707	-		DDA3937_RS00050	0.11	-1.3
10,707	-		DDA3937_RS00050	0.11	-0.8
10,781	-		DDA3937_RS00050	0.19	-0.3
10,816	+		DDA3937_RS00050	0.23	+0.3
10,817	-		DDA3937_RS00050	0.23	-0.6
10,834	+		DDA3937_RS00050	0.25	-1.4
10,970	+		DDA3937_RS00050	0.39	-1.6
10,971	-		DDA3937_RS00050	0.40	-0.9
10,971	-		DDA3937_RS00050	0.40	-1.7
10,971	-		DDA3937_RS00050	0.40	-2.1
10,996	+		DDA3937_RS00050	0.42	+1.7
11,242	+		DDA3937_RS00050	0.69	-2.3
11,243	-		DDA3937_RS00050	0.69	-2.1
11,243	-		DDA3937_RS00050	0.69	+1.3
11,243	-		DDA3937_RS00050	0.69	-1.2
11,260	-		DDA3937_RS00050	0.71	-0.5
11,260	-		DDA3937_RS00050	0.71	-1.0
11,266	+		DDA3937_RS00050	0.71	+1.1
11,266	+		DDA3937_RS00050	0.71	-1.5
11,266	+		DDA3937_RS00050	0.71	-1.5
11,266	+		DDA3937_RS00050	0.71	-0.5
11,266	+		DDA3937_RS00050	0.71	-1.4
11,267	-		DDA3937_RS00050	0.72	-0.3
11,267	-		DDA3937_RS00050	0.72	-2.4
11,267	-		DDA3937_RS00050	0.72	-0.9
11,267	-		DDA3937_RS00050	0.72	-2.1
11,267	-		DDA3937_RS00050	0.72	+0.7
11,267	-		DDA3937_RS00050	0.72	-1.4
11,267	-		DDA3937_RS00050	0.72	-0.9
11,267	-		DDA3937_RS00050	0.72	+0.7
11,267	-		DDA3937_RS00050	0.72	+1.2
11,317	+		DDA3937_RS00050	0.77	+0.2
11,317	+		DDA3937_RS00050	0.77	+1.0
11,317	+		DDA3937_RS00050	0.77	+0.7
11,317	+		DDA3937_RS00050	0.77	-0.3
11,318	-		DDA3937_RS00050	0.77	-0.9
11,318	-		DDA3937_RS00050	0.77	+4.2
11,318	-		DDA3937_RS00050	0.77	-1.1
11,318	-		DDA3937_RS00050	0.77	-0.7
11,318	-		DDA3937_RS00050	0.77	+0.0