Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS23485

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,528,294	+		DDA3937_RS06825	0.72	+0.4
1,528,295	-		DDA3937_RS06825	0.72	-0.3
1,528,304	+		DDA3937_RS06825	0.73	+0.9
1,528,304	+		DDA3937_RS06825	0.73	-1.4
1,528,304	+		DDA3937_RS06825	0.73	-0.6
1,528,304	+		DDA3937_RS06825	0.73	-1.9
1,528,304	+		DDA3937_RS06825	0.73	+1.9
1,528,304	+		DDA3937_RS06825	0.73	+1.9
1,528,304	+		DDA3937_RS06825	0.73	-0.7
1,528,305	-		DDA3937_RS06825	0.73	-0.3
1,528,305	-		DDA3937_RS06825	0.73	-0.6
1,528,305	-		DDA3937_RS06825	0.73	-0.6
1,528,305	-				+0.6
1,528,376	+		DDA3937_RS06825	0.76	-1.2
1,528,376	+		DDA3937_RS06825	0.76	-0.1
1,528,377	-		DDA3937_RS06825	0.76	-1.1
1,528,378	+		DDA3937_RS06825	0.76	-0.8
1,528,397	+		DDA3937_RS06825	0.77	+0.4
1,528,412	+		DDA3937_RS06825	0.78	-1.2
1,528,412	+		DDA3937_RS06825	0.78	-0.1
1,528,412	+		DDA3937_RS06825	0.78	+0.4
1,528,412	+		DDA3937_RS06825	0.78	+0.9
1,528,413	-		DDA3937_RS06825	0.78	+1.6
1,528,480	+		DDA3937_RS06825	0.81	-1.2
1,528,480	+		DDA3937_RS06825	0.81	-0.6
1,528,480	+		DDA3937_RS06825	0.81	+1.0
1,528,480	+		DDA3937_RS06825	0.81	-1.1
1,528,481	-				+0.5
1,528,481	-		DDA3937_RS06825	0.81	-1.5
1,528,481	-		DDA3937_RS06825	0.81	+0.1
1,528,484	+		DDA3937_RS06825	0.81	-1.9
1,528,484	+		DDA3937_RS06825	0.81	-0.9
1,528,484	+		DDA3937_RS06825	0.81	+0.5
1,528,485	-		DDA3937_RS06825	0.81	-2.7
1,528,485	-		DDA3937_RS06825	0.81	+0.0
1,528,485	-		DDA3937_RS06825	0.81	-1.0
1,528,485	-		DDA3937_RS06825	0.81	-0.5
1,528,485	-		DDA3937_RS06825	0.81	-0.4
1,528,530	-		DDA3937_RS06825	0.83	+0.1
1,528,559	+		DDA3937_RS06825	0.85	+0.1
1,528,559	+		DDA3937_RS06825	0.85	-0.5
1,528,560	-		DDA3937_RS06825	0.85	+1.3
1,528,560	-		DDA3937_RS06825	0.85	-0.1
1,528,748	+				+1.9
1,528,748	+				-0.6
1,528,748	+				-0.8
1,528,749	-				-1.1
1,528,749	-				-0.4
1,528,749	-				-1.6
1,528,865	+				-0.1
1,528,865	+				+4.5
1,528,865	+				+0.3
1,528,865	+				-3.2
1,528,865	+				-0.7
1,528,865	+				-0.4
1,528,866	-				-0.9
1,528,866	-				-1.1
1,528,866	-				+0.3
1,528,866	-				+1.2
1,528,866	-				-0.9
1,528,866	-				-1.2
1,528,866	-				-0.6
1,528,867	+				-0.1
1,528,868	-				+2.3
1,528,887	-				-0.0
1,528,902	+				-0.7
1,529,094	+				+0.5
1,529,149	-				-0.5
1,529,190	+				-0.9
1,529,191	-				+0.9
1,529,254	-				-1.7
1,529,333	+		DDA3937_RS23485	0.30	-1.5
1,529,333	+		DDA3937_RS23485	0.30	-0.9
1,529,497	-				-1.1
1,529,574	+				-0.9
1,529,575	-				-0.8
1,529,575	-				-0.7
1,529,578	+				-0.7
1,529,585	-				-0.2
1,529,612	+				-0.4
1,529,613	-				+0.1
1,529,613	-				+0.1
1,529,627	+				-0.3
1,529,627	+				-0.7
1,529,627	+				+0.1
1,529,627	+				+0.2
1,529,627	+				-1.0
1,529,627	+				+1.8
1,529,627	+				+0.9
1,529,628	-				-0.0
1,529,628	-				+1.3
1,529,628	-				-0.4
1,529,628	-				-0.9
1,529,628	-				+2.8
1,529,628	-				-0.9
1,529,648	-				-1.9
1,529,653	-				+0.4
1,529,705	+				-0.3
1,529,705	+				-2.3
1,529,705	+				-0.1
1,529,705	+				+0.1
1,529,706	-				-0.5
1,529,740	+				+2.1
1,529,776	+				-0.1
1,529,777	-				+0.4
1,529,777	-				-0.4
1,529,778	+				-0.6
1,529,778	+				+0.1
1,529,778	+				+0.9
1,529,778	+				-0.4
1,529,778	+				+0.3
1,529,778	+				-0.5
1,529,778	+				-0.8
1,529,778	+				-1.0
1,529,779	-				-0.7
1,529,779	-				+0.6
1,529,779	-				+0.8
1,529,779	-				-1.1
1,529,779	-				+0.7
1,529,779	-				-0.8
1,529,779	-				-1.4
1,529,797	+				-0.1
1,529,797	+				-2.5
1,529,797	+				-1.4
1,529,797	+				-0.6
1,529,798	-				+0.2
1,529,798	-				-1.6
1,529,798	-				-0.6
1,529,798	-				-1.4
1,529,869	+				-1.1
1,529,869	+				+0.6
1,529,869	+				+1.0
1,529,870	-				-1.9
1,529,883	+				-1.2
1,529,927	-		DDA3937_RS06830	0.12	+0.5
1,530,147	+		DDA3937_RS06830	0.33	-0.1
1,530,147	+		DDA3937_RS06830	0.33	-1.0
1,530,216	+		DDA3937_RS06830	0.40	+1.1
1,530,217	-		DDA3937_RS06830	0.40	-0.8
1,530,217	-		DDA3937_RS06830	0.40	-0.3
1,530,268	+		DDA3937_RS06830	0.45	-0.4
1,530,268	+		DDA3937_RS06830	0.45	-1.0
1,530,268	+		DDA3937_RS06830	0.45	-1.0
1,530,268	+		DDA3937_RS06830	0.45	-0.0
1,530,268	+		DDA3937_RS06830	0.45	-0.8
1,530,268	+		DDA3937_RS06830	0.45	-0.1
1,530,268	+		DDA3937_RS06830	0.45	-1.1
1,530,269	-		DDA3937_RS06830	0.45	-0.0
1,530,269	-		DDA3937_RS06830	0.45	+0.4
1,530,269	-		DDA3937_RS06830	0.45	+1.0
1,530,287	+		DDA3937_RS06830	0.46	+0.9
1,530,287	+		DDA3937_RS06830	0.46	+1.1
1,530,287	+		DDA3937_RS06830	0.46	-0.5
1,530,287	+		DDA3937_RS06830	0.46	+0.6
1,530,287	+		DDA3937_RS06830	0.46	-0.4
1,530,288	-		DDA3937_RS06830	0.46	+0.3
1,530,288	-		DDA3937_RS06830	0.46	-0.7
1,530,288	-		DDA3937_RS06830	0.46	-1.4
1,530,288	-		DDA3937_RS06830	0.46	+0.9
1,530,291	+		DDA3937_RS06830	0.47	+1.8
1,530,291	+		DDA3937_RS06830	0.47	-2.1
1,530,291	+		DDA3937_RS06830	0.47	-0.2
1,530,291	+		DDA3937_RS06830	0.47	-0.5
1,530,291	+		DDA3937_RS06830	0.47	-0.1
1,530,291	+		DDA3937_RS06830	0.47	-0.1
1,530,291	+		DDA3937_RS06830	0.47	+0.3
1,530,291	+		DDA3937_RS06830	0.47	-0.7
1,530,291	+		DDA3937_RS06830	0.47	-1.0
1,530,291	+		DDA3937_RS06830	0.47	-0.5
1,530,291	+		DDA3937_RS06830	0.47	+0.4
1,530,291	+		DDA3937_RS06830	0.47	-0.8
1,530,291	+		DDA3937_RS06830	0.47	-0.7
1,530,291	+		DDA3937_RS06830	0.47	-1.3
1,530,292	-		DDA3937_RS06830	0.47	-1.2
1,530,292	-		DDA3937_RS06830	0.47	-0.3
1,530,292	-		DDA3937_RS06830	0.47	+0.1
1,530,292	-		DDA3937_RS06830	0.47	-0.2
1,530,292	-		DDA3937_RS06830	0.47	-1.3
1,530,292	-		DDA3937_RS06830	0.47	-0.7
1,530,292	-		DDA3937_RS06830	0.47	+0.2
1,530,292	-		DDA3937_RS06830	0.47	-0.8
1,530,296	-		DDA3937_RS06830	0.47	+0.1
1,530,296	-		DDA3937_RS06830	0.47	-0.6
1,530,296	-		DDA3937_RS06830	0.47	+0.9
1,530,323	-		DDA3937_RS06830	0.50	-1.4
1,530,323	-		DDA3937_RS06830	0.50	+0.5
1,530,387	+		DDA3937_RS06830	0.56	-1.9
1,530,387	+		DDA3937_RS06830	0.56	+0.2
1,530,388	-				-1.1
1,530,400	+		DDA3937_RS06830	0.57	+0.3
1,530,400	+		DDA3937_RS06830	0.57	-1.9
1,530,400	+		DDA3937_RS06830	0.57	-1.1
1,530,400	+		DDA3937_RS06830	0.57	-1.4
1,530,400	+		DDA3937_RS06830	0.57	-1.6
1,530,412	+		DDA3937_RS06830	0.58	-0.3