Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS23115

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,888,854	+				+1.8
1,888,854	+				-0.2
1,888,854	+				-1.2
1,888,855	-				-1.2
1,888,863	+				-1.6
1,888,863	+				-0.3
1,888,863	+				-0.2
1,888,964	+				+0.4
1,888,994	-				-2.1
1,889,014	+				-2.8
1,889,015	-				+0.2
1,889,015	-				+0.9
1,889,015	-				-0.8
1,889,022	+				-0.1
1,889,022	+				-0.0
1,889,023	-				+0.6
1,889,023	-				+0.2
1,889,023	-				-0.9
1,889,036	-				-0.2
1,889,087	+				-0.0
1,889,088	-				-2.6
1,889,120	+				-0.1
1,889,128	+				-1.1
1,889,128	+				+0.7
1,889,128	+				-1.6
1,889,129	-				-0.2
1,889,129	-				-0.1
1,889,129	-				+0.5
1,889,129	-				+0.3
1,889,192	+				-0.7
1,889,192	+				+2.5
1,889,193	-				+1.3
1,889,242	+				-1.8
1,889,243	-				+0.6
1,889,245	+				+0.0
1,889,296	+				-1.2
1,889,296	+				-1.7
1,889,297	-				-0.2
1,889,297	-				-0.9
1,889,324	+				+0.4
1,889,324	+				-0.7
1,889,325	-				-1.8
1,889,325	-				-0.5
1,889,373	+				-0.5
1,889,373	+				-0.2
1,889,373	+				-1.2
1,889,373	+				+0.9
1,889,373	+				+0.8
1,889,373	+				-0.1
1,889,374	-				+1.1
1,889,374	-				+0.0
1,889,374	-				-1.1
1,889,374	-				+0.1
1,889,532	+				-0.5
1,889,532	+				+0.1
1,889,532	+				+0.2
1,889,532	+				+0.6
1,889,581	-				-0.5
1,889,581	-				-0.1
1,889,805	+				+0.2
1,889,805	+				+0.3
1,889,805	+				-0.5
1,889,805	+				-0.1
1,889,805	+				+0.8
1,889,805	+				-0.1
1,889,805	+				+0.5
1,889,805	+				+0.3
1,889,805	+				+0.5
1,889,805	+				-0.8
1,889,805	+				-3.3
1,889,807	+				+0.4
1,889,807	+				-1.1
1,889,807	+				-0.6
1,889,807	+				+0.1
1,889,807	+				-0.8
1,889,807	+				-1.1
1,889,807	+				-0.2
1,889,807	+				-1.3
1,889,807	+				+0.3
1,889,807	+				-1.2
1,889,807	+				-2.5
1,889,807	+				-0.2
1,889,807	+				-0.2
1,889,807	+				-0.1
1,889,807	+				+0.1
1,889,807	+				-1.6
1,889,807	+				-0.1
1,889,807	+				-1.4
1,889,807	+				-0.6
1,889,807	+				-0.2
1,889,807	+				-1.2
1,889,807	+				-0.8
1,889,920	-		DDA3937_RS23115	0.37	-2.5
1,890,034	+		DDA3937_RS23115	0.75	+0.4
1,890,034	+		DDA3937_RS23115	0.75	-0.9
1,890,034	+		DDA3937_RS23115	0.75	+2.3
1,890,035	-		DDA3937_RS23115	0.76	-1.5
1,890,059	+		DDA3937_RS23115	0.84	-1.7
1,890,060	-		DDA3937_RS23115	0.84	-0.8
1,890,097	+				+0.1
1,890,098	-				-0.2
1,890,152	+				-0.2
1,890,179	+				+0.6
1,890,180	-				-0.0
1,890,180	-				-1.2
1,890,193	+				-0.5
1,890,194	-				+0.0
1,890,194	-				-0.3
1,890,220	+				-0.1
1,890,229	+				+0.2
1,890,230	-				+0.3
1,890,230	-				-0.6
1,890,258	+				+0.9
1,890,277	+				-0.6
1,890,278	-				+0.5
1,890,278	-				+0.6
1,890,292	+				+1.6
1,890,301	-				-2.4
1,890,301	-				+0.8
1,890,304	+				+0.0
1,890,304	+				-1.6
1,890,304	+				-0.4
1,890,305	-				-0.4
1,890,307	+				-0.6
1,890,307	+				+0.2
1,890,308	-				-0.5
1,890,308	-				+0.7
1,890,316	+				-0.1
1,890,316	+				+1.8
1,890,316	+				-0.2
1,890,316	+				+1.2
1,890,316	+				+0.0
1,890,316	+				+0.3
1,890,316	+				-0.4
1,890,316	+				+0.1
1,890,317	-				-0.2
1,890,317	-				+2.9
1,890,317	-				-0.1
1,890,317	-				-0.0
1,890,317	-				-0.5
1,890,317	-				-1.1
1,890,317	-				+0.2
1,890,317	-				+0.2
1,890,320	+				-0.1
1,890,321	-				+0.9
1,890,321	-				-0.5
1,890,331	+				-0.6
1,890,331	+				-0.4
1,890,331	+				-1.6
1,890,331	+				+0.2
1,890,331	+				-1.2
1,890,331	+				+0.7
1,890,331	+				-2.2
1,890,331	+				-0.9
1,890,331	+				+0.5
1,890,331	+				+1.8
1,890,332	-				+1.0
1,890,332	-				-0.2
1,890,332	-				-0.4
1,890,332	-				+0.2
1,890,335	+				-0.8
1,890,335	+				-1.1
1,890,335	+				-1.2
1,890,335	+				+0.3
1,890,335	+				-0.3
1,890,335	+				-0.8
1,890,335	+				-0.2
1,890,336	-				+0.5
1,890,336	-				+0.0
1,890,336	-				+0.2
1,890,336	-				+1.1
1,890,374	+				-1.2
1,890,440	+				+1.2
1,890,441	-				+0.1
1,890,441	-				-0.6
1,890,450	+				+0.8
1,890,457	+				-0.1
1,890,457	+				-0.3
1,890,458	-				-1.3
1,890,458	-				-2.0
1,890,463	+				-0.1
1,890,463	+				-0.2
1,890,463	+				+0.1
1,890,464	-				+0.8
1,890,464	-				+0.2
1,890,464	-				-1.2
1,890,516	+				+1.1
1,890,516	+				+0.5
1,890,516	+				-1.9
1,890,516	+				+0.0
1,890,516	+				-1.8
1,890,517	-				+2.2
1,890,517	-				-0.3
1,890,537	-				-0.6
1,890,591	-				+0.4
1,890,591	-				+0.8
1,890,591	-				+0.9
1,890,680	+				-0.1
1,890,680	+				-0.8
1,890,681	-				-0.2
1,890,681	-				-1.1
1,890,681	-				-0.8
1,890,693	+				+0.1
1,890,693	+				+0.8
1,890,707	+				+2.7
1,890,708	-				-1.1
1,890,727	+				-0.2
1,890,728	-				-0.3
1,890,730	+				+0.3
1,890,730	+				-1.6
1,890,734	+				-0.7
1,890,734	+				-1.6
1,890,734	+				+0.3
1,890,735	-				-0.7
1,890,735	-				-0.1
1,890,735	-				+0.2
1,890,735	-				+0.1
1,890,735	-				-2.3
1,890,735	-				-0.2
1,890,741	-				-0.2
1,890,767	-				-0.8
1,890,767	-				-0.6
1,890,774	+				+1.1
1,890,774	+				+0.3
1,890,774	+				-0.2
1,890,775	-				+1.8
1,890,776	+				-1.4
1,890,776	+				-0.8
1,890,776	+				+0.6
1,890,776	+				-0.6
1,890,776	+				-0.3
1,890,776	+				-0.2
1,890,776	+				+0.9
1,890,777	-				+0.5
1,890,777	-				-1.8
1,890,777	-				-2.1
1,890,777	-				+0.2
1,890,777	-				-2.1
1,890,777	-				-1.3
1,890,777	-				-0.3
1,890,777	-				-0.5
1,890,777	-				-0.6
1,890,800	+				-2.1
1,890,800	+				+0.2
1,890,801	-				+0.8
1,890,801	-				-0.5
1,890,801	-				-0.4
1,890,804	+				-1.0
1,890,804	+				+0.5
1,890,805	-				+1.0
1,890,810	+				-1.4
1,890,810	+				+1.0
1,890,810	+				+0.4
1,890,811	-				-1.1
1,890,811	-				-0.1
1,890,811	-				+0.0
1,890,811	-				+0.2
1,890,811	-				+0.4
1,890,812	+				-0.5
1,890,812	+				-1.2
1,890,812	+				+0.4
1,890,813	-				+0.8
1,890,813	-				+0.8
1,890,813	-				-0.8
1,890,813	-				+0.8
1,890,813	-				-0.8
1,890,890	+				-0.6
1,890,892	+				+0.4
1,890,929	-				-1.8
1,890,929	-				-0.0
1,890,931	+				-0.8
1,890,931	+				+1.0
1,890,931	+				-0.6
1,890,931	+				+0.6
1,890,931	+				+0.6
1,890,931	+				-0.8
1,890,931	+				-0.2
1,890,931	+				+0.6
1,890,931	+				-0.1
1,890,931	+				-1.3
1,890,931	+				-0.2
1,890,932	-				-1.0
1,890,932	-				-1.1
1,890,932	-				+1.1
1,890,932	-				-1.1
1,890,952	+				-0.3
1,890,952	+				-3.1
1,890,952	+				+0.1
1,890,953	-				+0.6
1,890,981	+				-0.2
1,890,982	-				-0.9
1,890,982	-				-0.4
1,890,982	-				-0.9
1,890,982	-				-0.4
1,890,983	+				+0.1
1,890,984	-				-0.6
1,891,038	-		DDA3937_RS23120	0.13	+0.0