Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS23045

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,022,998	+		DDA3937_RS04635	0.52	-0.1
1,023,043	+		DDA3937_RS04635	0.56	+0.7
1,023,043	+		DDA3937_RS04635	0.56	+0.3
1,023,043	+		DDA3937_RS04635	0.56	+0.1
1,023,043	+		DDA3937_RS04635	0.56	+0.4
1,023,044	-		DDA3937_RS04635	0.56	-0.3
1,023,044	-		DDA3937_RS04635	0.56	-1.4
1,023,044	-		DDA3937_RS04635	0.56	+0.7
1,023,225	+		DDA3937_RS04635	0.71	-0.9
1,023,259	+		DDA3937_RS04635	0.74	+1.0
1,023,293	+		DDA3937_RS04635	0.77	-0.6
1,023,294	-		DDA3937_RS04635	0.77	-1.0
1,023,294	-		DDA3937_RS04635	0.77	+1.2
1,023,313	+		DDA3937_RS04635	0.79	-0.7
1,023,313	+		DDA3937_RS04635	0.79	-1.0
1,023,313	+		DDA3937_RS04635	0.79	-0.3
1,023,314	-		DDA3937_RS04635	0.79	+0.5
1,023,314	-		DDA3937_RS04635	0.79	-0.2
1,023,474	+				-1.1
1,023,474	+				+0.3
1,023,475	-				+0.0
1,023,542	+				-0.9
1,023,582	-				-0.1
1,023,649	-				+0.0
1,023,682	+				-1.7
1,023,686	+				-0.6
1,023,765	+				-0.5
1,023,765	+				-0.1
1,023,766	-				-0.4
1,023,766	-				-0.5
1,023,931	+		DDA3937_RS23045	0.69	-0.8
1,023,932	-		DDA3937_RS23045	0.69	-1.3
1,023,973	+				-1.1
1,023,973	+				-0.4
1,023,973	+				+0.1
1,023,974	-				-0.1
1,023,974	-				-1.8
1,023,998	-				-1.0
1,023,998	-				+1.0
1,024,001	+				-0.1
1,024,002	-				+0.0
1,024,002	-				-0.4
1,024,002	-				-0.8
1,024,014	-				-2.6
1,024,040	+				-1.2
1,024,044	+				-1.4
1,024,044	+				-0.6
1,024,045	-				-0.1
1,024,045	-				+1.8
1,024,045	-				-1.8
1,024,045	-				-0.7
1,024,052	+				-1.1
1,024,052	+				+0.2
1,024,066	-				-0.8
1,024,078	+				-0.2
1,024,079	-				-0.4
1,024,141	+				-0.4
1,024,141	+				-0.2
1,024,141	+				+0.4
1,024,142	-				-0.8
1,024,142	-				-0.6
1,024,142	-				-2.1
1,024,142	-				-2.3
1,024,158	-				-0.7
1,024,160	+				+1.9
1,024,161	-				-0.1
1,024,183	+				+0.2
1,024,184	-				-1.0
1,024,184	-				+2.8
1,024,184	-				+0.0
1,024,192	+				-0.9
1,024,200	+				-1.3
1,024,200	+				-0.6
1,024,210	+				-1.1
1,024,211	-				-0.6
1,024,212	-				+0.0
1,024,216	+				-0.6
1,024,216	+				+1.0
1,024,216	+				+0.7
1,024,217	-				-0.7
1,024,217	-				+0.2
1,024,217	-				-0.7
1,024,217	-				-1.8
1,024,217	-				+1.3
1,024,217	-				-0.9
1,024,217	-				-1.8
1,024,277	+				+0.0
1,024,277	+				-0.6
1,024,277	+				+0.7
1,024,278	-				-1.0
1,024,278	-				-0.3
1,024,278	-				-1.8
1,024,279	+				-0.2
1,024,279	+				+0.0
1,024,279	+				+0.6
1,024,279	+				-1.3
1,024,280	-				-1.0
1,024,280	-				-0.2
1,024,280	-				-0.8
1,024,280	-				-0.9
1,024,305	-				+1.8
1,024,348	+		DDA3937_RS04640	0.15	-1.4
1,024,349	-		DDA3937_RS04640	0.15	+0.5
1,024,352	+		DDA3937_RS04640	0.15	+0.1
1,024,352	+		DDA3937_RS04640	0.15	-1.8
1,024,352	+		DDA3937_RS04640	0.15	-1.4
1,024,353	-		DDA3937_RS04640	0.16	-1.2
1,024,353	-		DDA3937_RS04640	0.16	+0.6
1,024,353	-		DDA3937_RS04640	0.16	-0.1
1,024,353	-		DDA3937_RS04640	0.16	-2.2
1,024,353	-		DDA3937_RS04640	0.16	-1.2
1,024,353	-		DDA3937_RS04640	0.16	+0.0
1,024,353	-		DDA3937_RS04640	0.16	-0.4
1,024,355	-		DDA3937_RS04640	0.16	-0.8
1,024,355	-		DDA3937_RS04640	0.16	-1.2
1,024,386	+		DDA3937_RS04640	0.21	-0.8
1,024,386	+		DDA3937_RS04640	0.21	+1.2
1,024,386	+		DDA3937_RS04640	0.21	+0.9
1,024,386	+		DDA3937_RS04640	0.21	-1.0
1,024,386	+		DDA3937_RS04640	0.21	-0.7
1,024,386	+		DDA3937_RS04640	0.21	+0.6
1,024,386	+		DDA3937_RS04640	0.21	-1.8
1,024,387	-		DDA3937_RS04640	0.21	-1.4
1,024,387	-		DDA3937_RS04640	0.21	-0.6
1,024,387	-		DDA3937_RS04640	0.21	+2.2
1,024,387	-		DDA3937_RS04640	0.21	+0.0
1,024,387	-		DDA3937_RS04640	0.21	-0.7
1,024,387	-		DDA3937_RS04640	0.21	-0.4
1,024,388	+		DDA3937_RS04640	0.21	-0.4
1,024,388	+		DDA3937_RS04640	0.21	-0.8
1,024,388	+		DDA3937_RS04640	0.21	-1.0
1,024,388	+		DDA3937_RS04640	0.21	+0.0
1,024,388	+		DDA3937_RS04640	0.21	-1.4
1,024,389	-		DDA3937_RS04640	0.21	+1.1
1,024,389	-		DDA3937_RS04640	0.21	-1.1
1,024,389	-		DDA3937_RS04640	0.21	-1.2
1,024,389	-		DDA3937_RS04640	0.21	-0.4
1,024,419	+		DDA3937_RS04640	0.26	-0.7
1,024,419	+		DDA3937_RS04640	0.26	+0.7
1,024,420	-		DDA3937_RS04640	0.26	+0.7
1,024,483	+		DDA3937_RS04640	0.36	+0.8
1,024,484	-		DDA3937_RS04640	0.37	-0.9
1,024,506	-		DDA3937_RS04640	0.40	-1.0
1,024,601	+		DDA3937_RS04640	0.55	-1.2
1,024,601	+		DDA3937_RS04640	0.55	+1.0
1,024,601	+		DDA3937_RS04640	0.55	+0.5
1,024,601	+		DDA3937_RS04640	0.55	-1.0
1,024,601	+		DDA3937_RS04640	0.55	+0.1
1,024,601	+		DDA3937_RS04640	0.55	-0.1
1,024,601	+		DDA3937_RS04640	0.55	+0.2
1,024,601	+		DDA3937_RS04640	0.55	-1.0
1,024,601	+		DDA3937_RS04640	0.55	-0.4
1,024,602	-		DDA3937_RS04640	0.55	+3.0
1,024,602	-		DDA3937_RS04640	0.55	-1.1
1,024,602	-		DDA3937_RS04640	0.55	-0.4
1,024,602	-		DDA3937_RS04640	0.55	-1.0
1,024,602	-		DDA3937_RS04640	0.55	+1.0
1,024,602	-		DDA3937_RS04640	0.55	-0.8
1,024,602	-		DDA3937_RS04640	0.55	+1.4
1,024,602	-		DDA3937_RS04640	0.55	-1.2
1,024,602	-		DDA3937_RS04640	0.55	-1.7
1,024,602	-		DDA3937_RS04640	0.55	+0.4
1,024,603	+		DDA3937_RS04640	0.56	-0.4
1,024,642	+		DDA3937_RS04640	0.62	+1.8
1,024,671	+		DDA3937_RS04640	0.67	-0.4
1,024,681	+		DDA3937_RS04640	0.68	+0.2
1,024,690	+		DDA3937_RS04640	0.70	+0.0
1,024,690	+		DDA3937_RS04640	0.70	+0.0
1,024,691	-		DDA3937_RS04640	0.70	-0.4
1,024,748	+		DDA3937_RS04640	0.79	-0.7
1,024,748	+		DDA3937_RS04640	0.79	+0.2
1,024,749	-		DDA3937_RS04640	0.79	+0.3
1,024,837	-				-0.0
1,024,837	-				-0.7
1,024,845	+				-0.2
1,024,845	+				-1.4
1,024,924	+				-0.6
1,024,924	+				-0.6
1,024,925	-				-1.9
1,024,938	+				-2.2
1,024,939	-				-0.2