Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS22235

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,521,723	+		DDA3937_RS11135	0.40	+0.3
2,521,724	-		DDA3937_RS11135	0.40	+3.1
2,521,724	-		DDA3937_RS11135	0.40	-1.5
2,521,724	-		DDA3937_RS11135	0.40	+0.3
2,521,724	-		DDA3937_RS11135	0.40	-0.9
2,521,724	-		DDA3937_RS11135	0.40	-1.0
2,521,761	-		DDA3937_RS11135	0.43	-2.2
2,521,799	-		DDA3937_RS11135	0.47	+0.2
2,521,799	-		DDA3937_RS11135	0.47	+1.4
2,521,870	+		DDA3937_RS11135	0.53	+1.0
2,521,870	+		DDA3937_RS11135	0.53	-1.3
2,521,871	-		DDA3937_RS11135	0.53	-0.8
2,521,887	+		DDA3937_RS11135	0.54	-0.6
2,521,887	+		DDA3937_RS11135	0.54	-2.4
2,521,888	-		DDA3937_RS11135	0.55	-0.2
2,521,891	+				+1.6
2,521,891	+		DDA3937_RS11135	0.55	-0.3
2,521,891	+		DDA3937_RS11135	0.55	-2.0
2,521,892	-		DDA3937_RS11135	0.55	-0.3
2,521,984	+		DDA3937_RS11135	0.63	+1.0
2,521,984	+		DDA3937_RS11135	0.63	-0.2
2,521,985	-		DDA3937_RS11135	0.63	+0.6
2,521,985	-		DDA3937_RS11135	0.63	+0.0
2,522,134	+		DDA3937_RS11135	0.76	-0.8
2,522,135	-		DDA3937_RS11135	0.77	+1.6
2,522,135	-		DDA3937_RS11135	0.77	+0.4
2,522,135	-		DDA3937_RS11135	0.77	+1.6
2,522,175	-		DDA3937_RS11135	0.80	-0.1
2,522,175	-				+0.6
2,522,175	-		DDA3937_RS11135	0.80	+0.2
2,522,221	+		DDA3937_RS11135	0.84	+0.9
2,522,221	+		DDA3937_RS11135	0.84	-1.0
2,522,222	-		DDA3937_RS11135	0.84	-0.6
2,522,222	-		DDA3937_RS11135	0.84	+0.2
2,522,222	-		DDA3937_RS11135	0.84	+0.6
2,522,222	-		DDA3937_RS11135	0.84	-1.0
2,522,223	+				-1.4
2,522,223	+		DDA3937_RS11135	0.84	-0.5
2,522,223	+		DDA3937_RS11135	0.84	-0.3
2,522,224	-		DDA3937_RS11135	0.84	-0.2
2,522,224	-		DDA3937_RS11135	0.84	+0.2
2,522,224	-		DDA3937_RS11135	0.84	-0.4
2,522,224	-				+0.3
2,522,240	-		DDA3937_RS11135	0.86	+0.6
2,522,323	+				+1.5
2,522,324	-				-0.7
2,522,324	-				+0.4
2,522,324	-				-1.8
2,522,324	-				-0.6
2,522,324	-				+0.5
2,522,324	-				-0.2
2,522,324	-				-1.0
2,522,395	+				+1.4
2,522,395	+				-1.0
2,522,395	+				-0.2
2,522,395	+				-0.5
2,522,396	-				+0.3
2,522,396	-				-0.4
2,522,396	-				-1.5
2,522,396	-				+0.3
2,522,396	-				+0.2
2,522,396	-				-0.6
2,522,438	-				+0.2
2,522,457	-				-0.1
2,522,576	+				+0.9
2,522,576	+				-0.1
2,522,576	+				-0.3
2,522,576	+				-2.4
2,522,576	+				+0.2
2,522,577	-				-2.1
2,522,577	-				-2.2
2,522,577	-				+0.6
2,522,577	-				+0.6
2,522,577	-				-1.9
2,522,587	-				-0.7
2,522,587	-				-1.0
2,522,587	-				-1.6
2,522,695	+				+0.6
2,522,696	-				+1.0
2,522,732	+				-2.2
2,522,733	-				+0.3
2,522,802	+		DDA3937_RS22235	0.26	+2.2
2,522,803	-		DDA3937_RS22235	0.26	-1.4
2,522,803	-		DDA3937_RS22235	0.26	+0.0
2,522,803	-		DDA3937_RS22235	0.26	-1.0
2,522,805	-		DDA3937_RS22235	0.27	-2.5
2,522,844	+		DDA3937_RS22235	0.38	-2.4
2,522,844	+		DDA3937_RS22235	0.38	-1.2
2,522,916	+		DDA3937_RS22235	0.59	-1.0
2,522,920	+		DDA3937_RS22235	0.60	-1.4
2,522,921	-		DDA3937_RS22235	0.60	-0.8
2,522,927	+		DDA3937_RS22235	0.62	-1.4
2,522,961	+		DDA3937_RS22235	0.72	-2.0
2,522,961	+		DDA3937_RS22235	0.72	+0.6
2,522,962	-		DDA3937_RS22235	0.72	-3.0
2,522,962	-		DDA3937_RS22235	0.72	-1.4
2,522,965	+		DDA3937_RS22235	0.73	-0.9
2,522,965	+		DDA3937_RS22235	0.73	+0.4
2,522,966	-		DDA3937_RS22235	0.73	-2.2
2,522,966	-		DDA3937_RS22235	0.73	-2.0
2,522,966	-				-1.7
2,523,089	+				-2.5
2,523,089	+				+1.2
2,523,089	+				-0.0
2,523,089	+				-0.6
2,523,090	-				-1.6
2,523,090	-				+1.6
2,523,092	+				-1.4
2,523,092	+				-1.4
2,523,093	-				+1.5
2,523,093	-				-1.1
2,523,093	-				-0.5
2,523,101	+				+0.0
2,523,102	-				+0.0
2,523,161	+		DDA3937_RS11140	0.11	-1.1
2,523,162	-		DDA3937_RS11140	0.11	+0.0
2,523,189	+		DDA3937_RS11140	0.14	-0.1
2,523,189	+				+0.3
2,523,189	+		DDA3937_RS11140	0.14	-0.8
2,523,190	-		DDA3937_RS11140	0.14	-1.4
2,523,197	+		DDA3937_RS11140	0.15	-2.7
2,523,198	-		DDA3937_RS11140	0.15	-2.2
2,523,198	-		DDA3937_RS11140	0.15	+0.4
2,523,198	-				+2.2
2,523,221	+		DDA3937_RS11140	0.17	+0.6
2,523,230	+		DDA3937_RS11140	0.18	-1.3
2,523,231	-		DDA3937_RS11140	0.18	+0.4
2,523,231	-		DDA3937_RS11140	0.18	-0.5
2,523,258	+		DDA3937_RS11140	0.21	-0.6
2,523,258	+		DDA3937_RS11140	0.21	+0.6
2,523,259	-		DDA3937_RS11140	0.21	+0.7
2,523,267	+		DDA3937_RS11140	0.22	-1.1
2,523,267	+		DDA3937_RS11140	0.22	-0.1
2,523,268	-		DDA3937_RS11140	0.22	-0.1
2,523,268	-		DDA3937_RS11140	0.22	+0.2
2,523,268	-		DDA3937_RS11140	0.22	+1.7
2,523,294	+		DDA3937_RS11140	0.25	-2.0
2,523,294	+		DDA3937_RS11140	0.25	+0.2
2,523,311	+		DDA3937_RS11140	0.27	-2.2
2,523,312	-		DDA3937_RS11140	0.27	-1.4
2,523,312	-		DDA3937_RS11140	0.27	-2.2
2,523,312	-		DDA3937_RS11140	0.27	+0.8
2,523,324	-		DDA3937_RS11140	0.29	-1.3
2,523,330	-		DDA3937_RS11140	0.29	-1.5
2,523,416	-		DDA3937_RS11140	0.39	-1.2
2,523,449	+		DDA3937_RS11140	0.42	+0.6
2,523,449	+		DDA3937_RS11140	0.42	-1.4
2,523,450	-		DDA3937_RS11140	0.42	-0.3
2,523,450	-		DDA3937_RS11140	0.42	-0.2
2,523,537	-		DDA3937_RS11140	0.52	-0.0
2,523,569	+		DDA3937_RS11140	0.55	+0.0
2,523,571	+		DDA3937_RS11140	0.56	-1.2
2,523,571	+		DDA3937_RS11140	0.56	-2.8
2,523,571	+		DDA3937_RS11140	0.56	-0.1
2,523,571	+		DDA3937_RS11140	0.56	-1.2
2,523,571	+		DDA3937_RS11140	0.56	-0.1
2,523,572	-		DDA3937_RS11140	0.56	-1.4
2,523,572	-		DDA3937_RS11140	0.56	-1.5
2,523,572	-		DDA3937_RS11140	0.56	-1.5
2,523,572	-		DDA3937_RS11140	0.56	+0.6
2,523,572	-				+0.9
2,523,572	-		DDA3937_RS11140	0.56	+0.3
2,523,624	-		DDA3937_RS11140	0.61	+0.1
2,523,624	-		DDA3937_RS11140	0.61	+0.8
2,523,635	+		DDA3937_RS11140	0.63	-0.6
2,523,635	+		DDA3937_RS11140	0.63	-0.0
2,523,635	+		DDA3937_RS11140	0.63	-0.4
2,523,635	+		DDA3937_RS11140	0.63	-0.2
2,523,635	+		DDA3937_RS11140	0.63	+0.3
2,523,635	+		DDA3937_RS11140	0.63	-1.0
2,523,635	+		DDA3937_RS11140	0.63	-0.4
2,523,635	+		DDA3937_RS11140	0.63	+0.2
2,523,635	+		DDA3937_RS11140	0.63	-1.1
2,523,635	+		DDA3937_RS11140	0.63	-0.7
2,523,635	+		DDA3937_RS11140	0.63	+0.2
2,523,636	-		DDA3937_RS11140	0.63	-0.4
2,523,636	-		DDA3937_RS11140	0.63	-0.4
2,523,636	-		DDA3937_RS11140	0.63	-3.5
2,523,636	-		DDA3937_RS11140	0.63	-0.8
2,523,636	-		DDA3937_RS11140	0.63	-0.3
2,523,636	-		DDA3937_RS11140	0.63	+0.2
2,523,636	-		DDA3937_RS11140	0.63	-1.1
2,523,636	-		DDA3937_RS11140	0.63	-0.7
2,523,636	-		DDA3937_RS11140	0.63	+0.7
2,523,636	-		DDA3937_RS11140	0.63	-0.2
2,523,636	-		DDA3937_RS11140	0.63	+0.0
2,523,636	-		DDA3937_RS11140	0.63	-0.8
2,523,636	-		DDA3937_RS11140	0.63	-3.5
2,523,636	-		DDA3937_RS11140	0.63	-1.8
2,523,636	-		DDA3937_RS11140	0.63	-1.1
2,523,637	+		DDA3937_RS11140	0.63	+0.2
2,523,637	+		DDA3937_RS11140	0.63	-0.6
2,523,637	+		DDA3937_RS11140	0.63	-0.8
2,523,637	+		DDA3937_RS11140	0.63	-2.0
2,523,637	+		DDA3937_RS11140	0.63	-2.0
2,523,638	-		DDA3937_RS11140	0.63	-1.1
2,523,638	-		DDA3937_RS11140	0.63	-0.2
2,523,638	-		DDA3937_RS11140	0.63	-0.0
2,523,702	+		DDA3937_RS11140	0.70	+0.3
2,523,711	+		DDA3937_RS11140	0.71	-0.8
2,523,712	-		DDA3937_RS11140	0.71	-1.5
2,523,712	-		DDA3937_RS11140	0.71	-0.6
2,523,767	-		DDA3937_RS11140	0.77	+0.8
2,523,806	+		DDA3937_RS11140	0.81	-1.0
2,523,830	+		DDA3937_RS11140	0.84	+0.2
2,523,831	-		DDA3937_RS11140	0.84	+0.8
2,523,931	+				-1.4
2,523,931	+				-0.4
2,523,932	-				-0.4
2,523,932	-				+0.9
2,523,932	-				-3.3
2,523,932	-				+0.6
2,523,953	+				+0.0
2,523,964	+				-0.4
2,523,964	+				-0.5
2,523,964	+				-1.0
2,523,965	-				-0.5
2,523,965	-				+0.6
2,523,965	-				-1.4
2,523,965	-				-2.0
2,523,965	-				-1.2
2,523,965	-				-2.0
2,523,965	-				-1.5
2,523,968	+				+1.8
2,523,968	+				+0.6
2,523,969	-				+0.4