Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21605

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,919,665	-				+1.3
4,919,711	-				+0.8
4,919,741	-				-0.3
4,919,748	+				-0.6
4,919,748	+				+0.4
4,919,749	-				+0.3
4,919,750	+				-1.6
4,919,750	+				-0.4
4,919,750	+				+0.6
4,919,750	+				-0.5
4,919,751	-				+1.0
4,919,751	-				+0.7
4,919,751	-				-2.7
4,919,764	-				+0.4
4,919,789	-				-1.4
4,919,800	+				-0.4
4,919,815	+				-0.3
4,919,816	-				-0.4
4,919,832	+				-1.0
4,919,838	+				-1.5
4,919,839	-				-0.5
4,919,839	-				-0.9
4,919,856	+				-0.3
4,919,856	+				-0.4
4,919,879	+				+0.3
4,919,879	+				-0.7
4,919,880	-				+0.8
4,919,880	-				-1.1
4,919,880	-				+0.4
4,920,001	+		DDA3937_RS21600	0.21	-1.7
4,920,001	+		DDA3937_RS21600	0.21	-0.6
4,920,246	+		DDA3937_RS21600	0.61	-0.4
4,920,246	+		DDA3937_RS21600	0.61	-1.3
4,920,246	+		DDA3937_RS21600	0.61	-0.9
4,920,247	-		DDA3937_RS21600	0.61	+0.6
4,920,247	-		DDA3937_RS21600	0.61	-0.5
4,920,247	-		DDA3937_RS21600	0.61	-2.6
4,920,329	+		DDA3937_RS21600	0.74	-0.6
4,920,329	+		DDA3937_RS21600	0.74	-1.2
4,920,330	-		DDA3937_RS21600	0.74	+0.3
4,920,375	-		DDA3937_RS21600	0.82	-0.8
4,920,376	+		DDA3937_RS21600	0.82	-1.6
4,920,376	+		DDA3937_RS21600	0.82	-0.9
4,920,376	+		DDA3937_RS21600	0.82	-0.3
4,920,376	+		DDA3937_RS21600	0.82	-0.0
4,920,376	+		DDA3937_RS21600	0.82	+0.1
4,920,376	+		DDA3937_RS21600	0.82	-0.4
4,920,377	-		DDA3937_RS21600	0.82	-0.7
4,920,377	-		DDA3937_RS21600	0.82	+0.6
4,920,377	-		DDA3937_RS21600	0.82	-0.6
4,920,377	-		DDA3937_RS21600	0.82	-1.7
4,920,399	+		DDA3937_RS21600	0.86	-1.3
4,920,399	+		DDA3937_RS21600	0.86	+0.0
4,920,399	+		DDA3937_RS21600	0.86	+0.1
4,920,409	+		DDA3937_RS21600	0.87	-1.0
4,920,409	+		DDA3937_RS21600	0.87	-1.7
4,920,409	+		DDA3937_RS21600	0.87	+0.2
4,920,409	+		DDA3937_RS21600	0.87	-0.6
4,920,410	-		DDA3937_RS21600	0.87	-0.7
4,920,410	-		DDA3937_RS21600	0.87	-0.2
4,920,410	-		DDA3937_RS21600	0.87	+0.5
4,920,410	-		DDA3937_RS21600	0.87	-0.8
4,920,410	-		DDA3937_RS21600	0.87	-0.6
4,920,410	-		DDA3937_RS21600	0.87	-0.6
4,920,410	-		DDA3937_RS21600	0.87	-0.1
4,920,410	-		DDA3937_RS21600	0.87	-1.3
4,920,410	-		DDA3937_RS21600	0.87	-0.1
4,920,410	-		DDA3937_RS21600	0.87	-1.0
4,920,410	-		DDA3937_RS21600	0.87	-1.8
4,920,462	+				+0.4
4,920,462	+				-1.1
4,920,463	-				-2.7
4,920,463	-				-0.2
4,920,479	+				+1.7
4,920,549	+				+0.0
4,920,549	+				-1.1
4,920,550	-				-0.2
4,920,550	-				-0.4
4,920,550	-				-1.1
4,920,550	-				-0.5
4,920,550	-				+1.8
4,920,557	-				-0.0
4,920,585	+				-1.1
4,920,586	-				-1.3
4,920,586	-				-2.3
4,920,586	-				-1.3
4,920,586	-				-1.3
4,920,586	-				+2.1
4,920,586	-				-1.2
4,920,801	+		DDA3937_RS21605	0.12	-1.6
4,920,803	+		DDA3937_RS21605	0.13	-0.7
4,920,803	+		DDA3937_RS21605	0.13	-1.6
4,920,803	+				-0.7
4,920,803	+		DDA3937_RS21605	0.13	-2.3
4,920,803	+		DDA3937_RS21605	0.13	-1.6
4,920,803	+				-1.1
4,920,804	-		DDA3937_RS21605	0.13	+0.3
4,920,896	+		DDA3937_RS21605	0.18	-0.9
4,920,980	-		DDA3937_RS21605	0.22	-1.6
4,921,229	+		DDA3937_RS21605	0.35	+0.0
4,921,230	-		DDA3937_RS21605	0.35	+0.7
4,921,230	-		DDA3937_RS21605	0.35	+0.3
4,921,230	-		DDA3937_RS21605	0.35	+0.3
4,921,230	-		DDA3937_RS21605	0.35	-0.1
4,921,415	+				-1.1
4,921,416	-		DDA3937_RS21605	0.45	-1.6
4,921,421	+		DDA3937_RS21605	0.45	-1.3
4,921,422	-		DDA3937_RS21605	0.45	-1.3
4,921,473	+		DDA3937_RS21605	0.48	-0.7
4,921,661	+		DDA3937_RS21605	0.58	-2.0
4,921,662	-		DDA3937_RS21605	0.58	-0.9
4,921,662	-		DDA3937_RS21605	0.58	-0.0
4,921,717	-		DDA3937_RS21605	0.61	+1.3
4,921,727	+		DDA3937_RS21605	0.61	+0.7
4,921,727	+				-1.1
4,921,727	+		DDA3937_RS21605	0.61	-1.3
4,921,727	+				-0.3
4,921,728	-		DDA3937_RS21605	0.62	+0.6
4,921,728	-		DDA3937_RS21605	0.62	-1.3
4,921,728	-				+0.3
4,921,728	-				+0.7
4,921,728	-				-0.3
4,921,728	-		DDA3937_RS21605	0.62	-0.7
4,921,786	-		DDA3937_RS21605	0.65	-0.6
4,921,786	-		DDA3937_RS21605	0.65	+1.6
4,921,831	-		DDA3937_RS21605	0.67	+0.0
4,921,831	-		DDA3937_RS21605	0.67	-2.0
4,921,946	+		DDA3937_RS21605	0.73	-0.7
4,921,946	+		DDA3937_RS21605	0.73	+0.3
4,921,947	-		DDA3937_RS21605	0.73	-2.7
4,921,947	-		DDA3937_RS21605	0.73	-0.2
4,921,947	-				-0.3
4,921,947	-		DDA3937_RS21605	0.73	-1.4
4,921,947	-		DDA3937_RS21605	0.73	-1.6
4,921,947	-		DDA3937_RS21605	0.73	-2.2
4,921,947	-		DDA3937_RS21605	0.73	-1.3
4,922,023	-		DDA3937_RS21605	0.77	-1.1
4,922,107	-				-0.3
4,922,107	-		DDA3937_RS21605	0.82	-0.2
4,922,172	+		DDA3937_RS21605	0.85	-1.7
4,922,276	-				-0.3
4,922,334	+				+0.2
4,922,334	+				-1.7
4,922,335	-				-2.6
4,922,340	+				-0.4
4,922,340	+				+2.8
4,922,341	-				+0.3
4,922,461	-				-1.2
4,922,461	-				-0.2
4,922,461	-				-0.7
4,922,461	-				+0.3
4,922,461	-				-0.7
4,922,461	-				-0.3
4,922,461	-				+0.3
4,922,461	-				-1.1
4,922,489	-				-0.4
4,922,489	-				-0.3
4,922,489	-				-0.6
4,922,489	-				-0.6
4,922,489	-				-0.3
4,922,489	-				-2.1
4,922,513	-				-0.7
4,922,513	-				+0.3
4,922,513	-				-0.4
4,922,513	-				-0.3
4,922,513	-				-1.1
4,922,513	-				-0.8
4,922,517	-				-2.5
4,922,517	-				+1.9
4,922,517	-				+0.7
4,922,517	-				-0.6
4,922,517	-				-0.5
4,922,517	-				+1.3
4,922,517	-				+1.8
4,922,517	-				-2.4
4,922,517	-				+0.5
4,922,517	-				+0.2
4,922,517	-				-0.6
4,922,556	-				-0.7
4,922,560	-				+0.3
4,922,560	-				-0.7