Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20775

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,720,144	-		DDA3937_RS20765	0.70	+0.7
4,720,147	+		DDA3937_RS20765	0.71	-0.2
4,720,147	+		DDA3937_RS20765	0.71	-0.1
4,720,147	+		DDA3937_RS20765	0.71	+0.4
4,720,148	-		DDA3937_RS20765	0.71	-1.0
4,720,148	-		DDA3937_RS20765	0.71	+0.2
4,720,148	-		DDA3937_RS20765	0.71	-1.1
4,720,148	-		DDA3937_RS20765	0.71	+0.1
4,720,200	+		DDA3937_RS20765	0.74	-1.0
4,720,200	+		DDA3937_RS20765	0.74	+0.6
4,720,200	+		DDA3937_RS20765	0.74	-0.8
4,720,200	+		DDA3937_RS20765	0.74	+3.9
4,720,200	+		DDA3937_RS20765	0.74	-1.1
4,720,204	-		DDA3937_RS20765	0.74	-0.9
4,720,204	-		DDA3937_RS20765	0.74	-0.1
4,720,224	+		DDA3937_RS20765	0.76	+0.3
4,720,268	+		DDA3937_RS20765	0.78	-0.2
4,720,269	-		DDA3937_RS20765	0.79	-0.8
4,720,277	+		DDA3937_RS20765	0.79	-1.7
4,720,277	+		DDA3937_RS20765	0.79	-1.3
4,720,278	-		DDA3937_RS20765	0.79	-0.6
4,720,278	-		DDA3937_RS20765	0.79	-0.4
4,720,278	-		DDA3937_RS20765	0.79	-3.3
4,720,278	-		DDA3937_RS20765	0.79	-1.0
4,720,290	-		DDA3937_RS20765	0.80	-0.1
4,720,342	+		DDA3937_RS20765	0.83	+0.4
4,720,376	+		DDA3937_RS20765	0.86	+0.6
4,720,377	-		DDA3937_RS20765	0.86	+0.2
4,720,393	+		DDA3937_RS20765	0.87	+0.5
4,720,394	-		DDA3937_RS20765	0.87	-1.9
4,720,394	-		DDA3937_RS20765	0.87	+0.2
4,720,394	-		DDA3937_RS20765	0.87	-0.9
4,720,399	+		DDA3937_RS20765	0.87	+0.4
4,720,399	+		DDA3937_RS20765	0.87	-1.0
4,720,400	-		DDA3937_RS20765	0.87	+0.5
4,720,400	-		DDA3937_RS20765	0.87	+1.0
4,720,400	-		DDA3937_RS20765	0.87	-0.2
4,720,476	+				+0.8
4,720,476	+				+0.3
4,720,476	+				-1.8
4,720,476	+				-0.8
4,720,477	-				-0.5
4,720,477	-				+0.8
4,720,477	-				-0.1
4,720,477	-				-0.6
4,720,477	-				-0.8
4,720,593	+				-0.3
4,720,594	-				-0.0
4,720,594	-				-1.1
4,720,594	-				-0.4
4,720,634	+				+0.2
4,720,657	+				-0.1
4,720,658	-				+0.1
4,720,666	-				+1.2
4,720,741	-		DDA3937_RS20770	0.11	-1.9
4,720,810	+		DDA3937_RS20770	0.27	-0.0
4,720,810	+		DDA3937_RS20770	0.27	-0.9
4,720,810	+		DDA3937_RS20770	0.27	+0.5
4,720,810	+		DDA3937_RS20770	0.27	-1.3
4,720,811	-		DDA3937_RS20770	0.27	-0.9
4,720,811	-		DDA3937_RS20770	0.27	-0.5
4,721,051	-		DDA3937_RS20770	0.83	+0.8
4,721,051	-		DDA3937_RS20770	0.83	-0.4
4,721,051	-		DDA3937_RS20770	0.83	+1.2
4,721,131	-				-0.3
4,721,131	-				-0.4
4,721,131	-				-0.3
4,721,206	+				-1.4
4,721,206	+				+0.1
4,721,206	+				-0.3
4,721,206	+				+1.2
4,721,206	+				-0.0
4,721,206	+				+0.1
4,721,207	-				+0.1
4,721,207	-				-0.9
4,721,207	-				-0.2
4,721,207	-				+0.5
4,721,207	-				-0.8
4,721,207	-				-1.8
4,721,207	-				-1.3
4,721,210	+				+0.5
4,721,210	+				+0.5
4,721,210	+				-1.8
4,721,211	-				-1.1
4,721,211	-				-2.0
4,721,245	-		DDA3937_RS20775	0.11	+0.5
4,721,267	+		DDA3937_RS20775	0.13	+0.0
4,721,268	-		DDA3937_RS20775	0.13	-0.8
4,721,268	-		DDA3937_RS20775	0.13	+0.2
4,721,365	-		DDA3937_RS20775	0.22	+0.5
4,721,365	-		DDA3937_RS20775	0.22	-0.6
4,721,379	+		DDA3937_RS20775	0.23	-0.3
4,721,379	+		DDA3937_RS20775	0.23	-0.6
4,721,379	+		DDA3937_RS20775	0.23	-0.0
4,721,379	+		DDA3937_RS20775	0.23	-1.1
4,721,379	+		DDA3937_RS20775	0.23	-0.2
4,721,379	+		DDA3937_RS20775	0.23	+0.2
4,721,380	-		DDA3937_RS20775	0.23	-0.6
4,721,380	-		DDA3937_RS20775	0.23	-0.1
4,721,380	-		DDA3937_RS20775	0.23	+3.3
4,721,608	-		DDA3937_RS20775	0.43	-0.3
4,721,608	-		DDA3937_RS20775	0.43	-3.1
4,721,608	-		DDA3937_RS20775	0.43	+0.0
4,722,198	+				+0.4
4,722,198	+				+0.7
4,722,199	-				-0.5
4,722,231	-				+0.2
4,722,252	+				-0.1
4,722,252	+				-2.3
4,722,252	+				-1.5
4,722,252	+				+0.2
4,722,252	+				+0.2
4,722,252	+				-1.2
4,722,252	+				-1.4
4,722,253	-				-1.3
4,722,253	-				-0.6
4,722,253	-				-0.6
4,722,253	-				-1.2
4,722,293	+				+2.7
4,722,504	+		DDA3937_RS20780	0.41	+0.1
4,722,504	+		DDA3937_RS20780	0.41	-1.0
4,722,517	+		DDA3937_RS20780	0.44	-0.3
4,722,517	+		DDA3937_RS20780	0.44	-1.2
4,722,517	+		DDA3937_RS20780	0.44	-0.7
4,722,518	-		DDA3937_RS20780	0.44	-0.9
4,722,523	+		DDA3937_RS20780	0.45	-0.3
4,722,574	+		DDA3937_RS20780	0.57	-0.9
4,722,575	-		DDA3937_RS20780	0.57	+0.3
4,722,575	-		DDA3937_RS20780	0.57	+0.2
4,722,652	-		DDA3937_RS20780	0.74	-0.3
4,722,682	+		DDA3937_RS20780	0.81	+0.1
4,722,705	+		DDA3937_RS20780	0.86	-0.9
4,722,783	+				+2.5
4,722,822	+				+3.1
4,722,822	+				-0.3
4,722,823	-				-0.3
4,722,823	-				-0.7
4,722,823	-				+0.4
4,722,827	-				-0.6
4,722,827	-				-1.8
4,722,827	-				-0.2
4,722,827	-				-0.8
4,722,840	+				-1.1
4,722,840	+				+1.0
4,722,841	-				+0.2
4,722,841	-				+0.8
4,722,858	+				+0.6
4,722,858	+				-1.1
4,722,859	-				+0.9
4,722,876	+				+0.8
4,722,877	-				-0.4
4,722,879	+				-0.2
4,722,879	+				-0.2
4,722,879	+				+0.7
4,722,879	+				-1.3
4,722,879	+				+1.5
4,722,880	-				+2.5
4,722,880	-				-1.0
4,722,897	+				+0.7
4,722,897	+				+0.3
4,722,898	-				+0.6
4,722,898	-				+1.7
4,722,905	-				-0.8
4,722,920	+				-0.2
4,722,921	-				+0.4
4,722,921	-				+1.8
4,722,921	-				-0.2
4,722,921	-				+1.3
4,722,921	-				-1.4
4,722,924	+				-0.1
4,722,924	+				-2.7
4,722,924	+				-0.1
4,722,925	-				+0.0
4,722,925	-				+0.9
4,722,925	-				+0.4
4,722,925	-				-1.4
4,722,925	-				-0.3
4,722,938	+				+0.2
4,722,938	+				+1.8
4,723,004	+				+0.1
4,723,004	+				-0.3
4,723,004	+				-0.5
4,723,004	+				-1.8
4,723,004	+				-1.0
4,723,005	-				-1.6
4,723,005	-				+0.6
4,723,023	-				-1.1
4,723,046	+				+0.1
4,723,046	+				-1.1
4,723,046	+				-0.2
4,723,046	+				+0.1
4,723,047	-				-1.2
4,723,047	-				+0.1
4,723,047	-				-1.0