Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20445 and DDA3937_RS20450 overlap by 4 nucleotides DDA3937_RS20450 and DDA3937_RS20455 are separated by 12 nucleotides DDA3937_RS20455 and DDA3937_RS20460 overlap by 4 nucleotides
DDA3937_RS20445: DDA3937_RS20445 - ADP-heptose--LPS heptosyltransferase RfaF, at 4,655,970 to 4,657,022
_RS20445
DDA3937_RS20450: DDA3937_RS20450 - lipopolysaccharide heptosyltransferase RfaC, at 4,657,019 to 4,657,990
_RS20450
DDA3937_RS20455: DDA3937_RS20455 - putative lipopolysaccharide heptosyltransferase III, at 4,658,003 to 4,659,088
_RS20455
DDA3937_RS20460: DDA3937_RS20460 - glycosyltransferase family 4 protein, at 4,659,085 to 4,660,203
_RS20460
Position (kb) 4658
4659
4660 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4657.977 kb on + strand at 4657.977 kb on + strand at 4657.977 kb on + strand at 4658.192 kb on + strand, within DDA3937_RS20455 at 4658.192 kb on + strand, within DDA3937_RS20455 at 4658.323 kb on - strand, within DDA3937_RS20455 at 4658.559 kb on + strand, within DDA3937_RS20455 at 4658.949 kb on + strand, within DDA3937_RS20455 at 4658.949 kb on + strand, within DDA3937_RS20455 at 4658.949 kb on + strand, within DDA3937_RS20455 at 4658.949 kb on + strand, within DDA3937_RS20455 at 4658.949 kb on + strand at 4658.950 kb on - strand, within DDA3937_RS20455 at 4658.950 kb on - strand, within DDA3937_RS20455 at 4658.950 kb on - strand, within DDA3937_RS20455 at 4658.950 kb on - strand, within DDA3937_RS20455 at 4659.497 kb on - strand, within DDA3937_RS20460
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,657,977 + -0.1 4,657,977 + +0.1 4,657,977 + -0.6 4,658,192 + DDA3937_RS20455 0.17 -0.9 4,658,192 + DDA3937_RS20455 0.17 -1.9 4,658,323 - DDA3937_RS20455 0.29 -0.9 4,658,559 + DDA3937_RS20455 0.51 -2.1 4,658,949 + DDA3937_RS20455 0.87 -1.8 4,658,949 + DDA3937_RS20455 0.87 -3.4 4,658,949 + DDA3937_RS20455 0.87 -2.2 4,658,949 + DDA3937_RS20455 0.87 -1.1 4,658,949 + -0.3 4,658,950 - DDA3937_RS20455 0.87 -1.8 4,658,950 - DDA3937_RS20455 0.87 -1.3 4,658,950 - DDA3937_RS20455 0.87 -2.8 4,658,950 - DDA3937_RS20455 0.87 -1.6 4,659,497 - DDA3937_RS20460 0.37 +1.1
Or see this region's nucleotide sequence