Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20425

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20420 and DDA3937_RS20425 are separated by 2 nucleotidesDDA3937_RS20425 and DDA3937_RS20430 are separated by 26 nucleotides DDA3937_RS20420: DDA3937_RS20420 - murein hydrolase activator EnvC, at 4,650,230 to 4,651,504 _RS20420 DDA3937_RS20425: DDA3937_RS20425 - divergent polysaccharide deacetylase family protein, at 4,651,507 to 4,652,451 _RS20425 DDA3937_RS20430: DDA3937_RS20430 - L-threonine 3-dehydrogenase, at 4,652,478 to 4,653,503 _RS20430 Position (kb) 4651 4652 4653Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4650.754 kb on + strand, within DDA3937_RS20420at 4651.067 kb on + strand, within DDA3937_RS20420at 4651.067 kb on + strand, within DDA3937_RS20420at 4651.067 kb on + strand, within DDA3937_RS20420at 4651.067 kb on + strand, within DDA3937_RS20420at 4651.067 kb on + strand, within DDA3937_RS20420at 4651.068 kb on - strand, within DDA3937_RS20420at 4651.068 kb on - strand, within DDA3937_RS20420at 4651.068 kb on - strand, within DDA3937_RS20420at 4651.068 kb on - strand, within DDA3937_RS20420at 4651.068 kb on - strand, within DDA3937_RS20420at 4651.068 kb on - strand, within DDA3937_RS20420at 4651.068 kb on - strand, within DDA3937_RS20420at 4651.068 kb on - strand, within DDA3937_RS20420at 4651.069 kb on + strand, within DDA3937_RS20420at 4651.070 kb on - strand, within DDA3937_RS20420at 4651.070 kb on - strand, within DDA3937_RS20420at 4651.070 kb on - strand, within DDA3937_RS20420at 4651.136 kb on + strand, within DDA3937_RS20420at 4651.137 kb on - strand, within DDA3937_RS20420at 4651.293 kb on - strand, within DDA3937_RS20420at 4651.341 kb on - strand, within DDA3937_RS20420at 4651.341 kb on - strand, within DDA3937_RS20420at 4651.346 kb on + strand, within DDA3937_RS20420at 4651.347 kb on - strand, within DDA3937_RS20420at 4651.445 kb on + strandat 4651.446 kb on - strandat 4651.502 kb on + strandat 4651.502 kb on + strandat 4651.503 kb on - strandat 4651.855 kb on - strand, within DDA3937_RS20425at 4651.865 kb on - strand, within DDA3937_RS20425at 4651.960 kb on + strand, within DDA3937_RS20425at 4651.961 kb on - strand, within DDA3937_RS20425at 4652.109 kb on - strand, within DDA3937_RS20425at 4652.109 kb on - strand, within DDA3937_RS20425at 4652.269 kb on + strand, within DDA3937_RS20425at 4652.269 kb on + strand, within DDA3937_RS20425at 4652.269 kb on + strand, within DDA3937_RS20425at 4652.270 kb on - strand, within DDA3937_RS20425at 4652.270 kb on - strand, within DDA3937_RS20425at 4652.354 kb on + strand, within DDA3937_RS20425at 4652.355 kb on - strand, within DDA3937_RS20425at 4652.355 kb on - strand, within DDA3937_RS20425at 4652.389 kb on - strandat 4652.416 kb on + strandat 4652.416 kb on + strandat 4652.417 kb on - strandat 4652.449 kb on + strandat 4652.479 kb on + strandat 4652.480 kb on - strandat 4652.480 kb on - strandat 4652.557 kb on + strandat 4652.617 kb on + strand, within DDA3937_RS20430at 4652.618 kb on - strand, within DDA3937_RS20430at 4652.644 kb on + strand, within DDA3937_RS20430at 4652.644 kb on + strand, within DDA3937_RS20430at 4652.644 kb on + strand, within DDA3937_RS20430at 4652.644 kb on + strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.654 kb on + strand, within DDA3937_RS20430at 4652.655 kb on - strand, within DDA3937_RS20430at 4652.714 kb on + strand, within DDA3937_RS20430at 4652.859 kb on + strand, within DDA3937_RS20430at 4652.859 kb on + strand, within DDA3937_RS20430at 4652.859 kb on + strand, within DDA3937_RS20430at 4652.860 kb on - strand, within DDA3937_RS20430at 4652.860 kb on - strand, within DDA3937_RS20430at 4653.068 kb on + strand, within DDA3937_RS20430at 4653.069 kb on - strand, within DDA3937_RS20430at 4653.113 kb on + strand, within DDA3937_RS20430at 4653.113 kb on + strand, within DDA3937_RS20430at 4653.115 kb on + strand, within DDA3937_RS20430at 4653.115 kb on + strand, within DDA3937_RS20430at 4653.115 kb on + strand, within DDA3937_RS20430at 4653.116 kb on - strand, within DDA3937_RS20430at 4653.133 kb on + strand, within DDA3937_RS20430at 4653.134 kb on - strandat 4653.176 kb on + strand, within DDA3937_RS20430at 4653.176 kb on + strand, within DDA3937_RS20430at 4653.177 kb on - strand, within DDA3937_RS20430at 4653.177 kb on - strand, within DDA3937_RS20430at 4653.177 kb on - strand, within DDA3937_RS20430at 4653.212 kb on + strand, within DDA3937_RS20430at 4653.213 kb on - strand, within DDA3937_RS20430at 4653.233 kb on + strand, within DDA3937_RS20430at 4653.233 kb on + strand, within DDA3937_RS20430at 4653.234 kb on - strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.370 kb on + strand, within DDA3937_RS20430at 4653.370 kb on + strand, within DDA3937_RS20430at 4653.370 kb on + strand, within DDA3937_RS20430at 4653.370 kb on + strand, within DDA3937_RS20430at 4653.370 kb on + strand, within DDA3937_RS20430at 4653.371 kb on - strand, within DDA3937_RS20430at 4653.371 kb on - strand, within DDA3937_RS20430at 4653.371 kb on - strand, within DDA3937_RS20430at 4653.371 kb on - strandat 4653.374 kb on + strand, within DDA3937_RS20430at 4653.374 kb on + strand, within DDA3937_RS20430at 4653.374 kb on + strand, within DDA3937_RS20430at 4653.375 kb on - strand, within DDA3937_RS20430at 4653.375 kb on - strand, within DDA3937_RS20430at 4653.375 kb on - strand, within DDA3937_RS20430at 4653.375 kb on - strand, within DDA3937_RS20430at 4653.375 kb on - strand, within DDA3937_RS20430at 4653.396 kb on - strand, within DDA3937_RS20430

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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4,650,754 + DDA3937_RS20420 0.41 +1.4
4,651,067 + DDA3937_RS20420 0.66 -0.7
4,651,067 + DDA3937_RS20420 0.66 -1.0
4,651,067 + DDA3937_RS20420 0.66 -0.6
4,651,067 + DDA3937_RS20420 0.66 -0.4
4,651,067 + DDA3937_RS20420 0.66 +0.1
4,651,068 - DDA3937_RS20420 0.66 -1.2
4,651,068 - DDA3937_RS20420 0.66 +2.2
4,651,068 - DDA3937_RS20420 0.66 +2.4
4,651,068 - DDA3937_RS20420 0.66 -0.5
4,651,068 - DDA3937_RS20420 0.66 -0.3
4,651,068 - DDA3937_RS20420 0.66 +0.4
4,651,068 - DDA3937_RS20420 0.66 -1.8
4,651,068 - DDA3937_RS20420 0.66 -1.9
4,651,069 + DDA3937_RS20420 0.66 -1.1
4,651,070 - DDA3937_RS20420 0.66 -1.6
4,651,070 - DDA3937_RS20420 0.66 -2.8
4,651,070 - DDA3937_RS20420 0.66 -0.3
4,651,136 + DDA3937_RS20420 0.71 -3.1
4,651,137 - DDA3937_RS20420 0.71 -1.4
4,651,293 - DDA3937_RS20420 0.83 -1.6
4,651,341 - DDA3937_RS20420 0.87 -0.1
4,651,341 - DDA3937_RS20420 0.87 -1.1
4,651,346 + DDA3937_RS20420 0.88 -1.5
4,651,347 - DDA3937_RS20420 0.88 -1.4
4,651,445 + -0.3
4,651,446 - -0.1
4,651,502 + -0.5
4,651,502 + -0.4
4,651,503 - -1.3
4,651,855 - DDA3937_RS20425 0.37 -0.2
4,651,865 - DDA3937_RS20425 0.38 +0.3
4,651,960 + DDA3937_RS20425 0.48 -1.3
4,651,961 - DDA3937_RS20425 0.48 -0.4
4,652,109 - DDA3937_RS20425 0.64 +0.3
4,652,109 - DDA3937_RS20425 0.64 +0.8
4,652,269 + DDA3937_RS20425 0.81 +0.5
4,652,269 + DDA3937_RS20425 0.81 +0.2
4,652,269 + DDA3937_RS20425 0.81 +0.5
4,652,270 - DDA3937_RS20425 0.81 +2.0
4,652,270 - DDA3937_RS20425 0.81 -0.1
4,652,354 + DDA3937_RS20425 0.90 -0.8
4,652,355 - DDA3937_RS20425 0.90 +0.8
4,652,355 - DDA3937_RS20425 0.90 +0.1
4,652,389 - +0.7
4,652,416 + +0.9
4,652,416 + -1.2
4,652,417 - +0.9
4,652,449 + +1.0
4,652,479 + -1.3
4,652,480 - -0.0
4,652,480 - -1.0
4,652,557 + +1.0
4,652,617 + DDA3937_RS20430 0.14 -0.3
4,652,618 - DDA3937_RS20430 0.14 -1.0
4,652,644 + DDA3937_RS20430 0.16 -1.0
4,652,644 + DDA3937_RS20430 0.16 +0.1
4,652,644 + DDA3937_RS20430 0.16 -0.7
4,652,644 + DDA3937_RS20430 0.16 -0.4
4,652,645 - DDA3937_RS20430 0.16 +3.2
4,652,645 - DDA3937_RS20430 0.16 -1.2
4,652,645 - DDA3937_RS20430 0.16 -0.3
4,652,645 - DDA3937_RS20430 0.16 -0.4
4,652,645 - DDA3937_RS20430 0.16 -0.8
4,652,645 - DDA3937_RS20430 0.16 +0.4
4,652,645 - DDA3937_RS20430 0.16 -2.2
4,652,645 - DDA3937_RS20430 0.16 +0.4
4,652,654 + DDA3937_RS20430 0.17 -1.3
4,652,655 - DDA3937_RS20430 0.17 +0.4
4,652,714 + DDA3937_RS20430 0.23 -0.3
4,652,859 + DDA3937_RS20430 0.37 +0.7
4,652,859 + DDA3937_RS20430 0.37 -1.1
4,652,859 + DDA3937_RS20430 0.37 +0.1
4,652,860 - DDA3937_RS20430 0.37 -1.3
4,652,860 - DDA3937_RS20430 0.37 -0.4
4,653,068 + DDA3937_RS20430 0.58 -0.2
4,653,069 - DDA3937_RS20430 0.58 -0.4
4,653,113 + DDA3937_RS20430 0.62 -1.0
4,653,113 + DDA3937_RS20430 0.62 -0.4
4,653,115 + DDA3937_RS20430 0.62 -1.3
4,653,115 + DDA3937_RS20430 0.62 -0.9
4,653,115 + DDA3937_RS20430 0.62 -2.1
4,653,116 - DDA3937_RS20430 0.62 -0.6
4,653,133 + DDA3937_RS20430 0.64 +0.7
4,653,134 - +0.2
4,653,176 + DDA3937_RS20430 0.68 -1.7
4,653,176 + DDA3937_RS20430 0.68 -0.8
4,653,177 - DDA3937_RS20430 0.68 +0.7
4,653,177 - DDA3937_RS20430 0.68 +0.4
4,653,177 - DDA3937_RS20430 0.68 +0.2
4,653,212 + DDA3937_RS20430 0.72 +1.2
4,653,213 - DDA3937_RS20430 0.72 -2.1
4,653,233 + DDA3937_RS20430 0.74 -0.8
4,653,233 + DDA3937_RS20430 0.74 -0.6
4,653,234 - DDA3937_RS20430 0.74 -0.4
4,653,310 + DDA3937_RS20430 0.81 -1.9
4,653,310 + DDA3937_RS20430 0.81 -0.8
4,653,310 + DDA3937_RS20430 0.81 -0.4
4,653,310 + DDA3937_RS20430 0.81 -1.7
4,653,310 + DDA3937_RS20430 0.81 -0.5
4,653,310 + DDA3937_RS20430 0.81 -1.7
4,653,310 + DDA3937_RS20430 0.81 -0.1
4,653,310 + DDA3937_RS20430 0.81 +0.1
4,653,311 - DDA3937_RS20430 0.81 -1.1
4,653,311 - DDA3937_RS20430 0.81 +0.5
4,653,311 - DDA3937_RS20430 0.81 -0.5
4,653,311 - DDA3937_RS20430 0.81 -0.3
4,653,311 - DDA3937_RS20430 0.81 -1.1
4,653,311 - DDA3937_RS20430 0.81 -0.3
4,653,311 - DDA3937_RS20430 0.81 +0.2
4,653,311 - DDA3937_RS20430 0.81 -0.3
4,653,370 + DDA3937_RS20430 0.87 -0.9
4,653,370 + DDA3937_RS20430 0.87 +0.4
4,653,370 + DDA3937_RS20430 0.87 -1.8
4,653,370 + DDA3937_RS20430 0.87 -1.2
4,653,370 + DDA3937_RS20430 0.87 -1.6
4,653,371 - DDA3937_RS20430 0.87 +0.4
4,653,371 - DDA3937_RS20430 0.87 -1.2
4,653,371 - DDA3937_RS20430 0.87 -0.1
4,653,371 - +0.5
4,653,374 + DDA3937_RS20430 0.87 -0.2
4,653,374 + DDA3937_RS20430 0.87 +0.5
4,653,374 + DDA3937_RS20430 0.87 -2.3
4,653,375 - DDA3937_RS20430 0.87 -0.2
4,653,375 - DDA3937_RS20430 0.87 -1.1
4,653,375 - DDA3937_RS20430 0.87 +1.1
4,653,375 - DDA3937_RS20430 0.87 -0.1
4,653,375 - DDA3937_RS20430 0.87 -1.7
4,653,396 - DDA3937_RS20430 0.89 +0.6

Or see this region's nucleotide sequence