Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20375

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,639,955	+		DDA3937_RS20370	0.20	-0.5
4,639,955	+		DDA3937_RS20370	0.20	+0.6
4,639,955	+		DDA3937_RS20370	0.20	-0.8
4,639,956	-		DDA3937_RS20370	0.20	-0.8
4,639,956	-		DDA3937_RS20370	0.20	-0.8
4,639,956	-		DDA3937_RS20370	0.20	-0.2
4,639,956	-		DDA3937_RS20370	0.20	-0.1
4,639,984	+		DDA3937_RS20370	0.24	-0.8
4,639,984	+		DDA3937_RS20370	0.24	-2.0
4,639,985	-		DDA3937_RS20370	0.24	+0.8
4,639,985	-		DDA3937_RS20370	0.24	-0.3
4,640,053	+		DDA3937_RS20370	0.33	-1.2
4,640,053	+		DDA3937_RS20370	0.33	-1.1
4,640,054	-		DDA3937_RS20370	0.33	-0.8
4,640,054	-		DDA3937_RS20370	0.33	+0.7
4,640,054	-		DDA3937_RS20370	0.33	+0.0
4,640,054	-		DDA3937_RS20370	0.33	+0.2
4,640,063	-		DDA3937_RS20370	0.35	-0.0
4,640,080	+		DDA3937_RS20370	0.37	-0.1
4,640,159	+		DDA3937_RS20370	0.47	-1.9
4,640,335	-		DDA3937_RS20370	0.70	-0.8
4,640,521	-				-0.6
4,640,521	-				-0.3
4,640,521	-				+0.2
4,640,551	-				-0.9
4,640,551	-				+0.5
4,640,551	-				-1.9
4,640,561	+				-0.6
4,640,562	-				+1.2
4,640,562	-				-1.2
4,640,562	-				-2.7
4,640,586	+				-0.2
4,640,587	-				-0.8
4,640,649	-				+0.1
4,640,663	+				-1.3
4,640,700	+				+0.8
4,640,700	+				+1.5
4,640,700	+				+0.5
4,640,701	-				-2.2
4,640,744	+				-0.8
4,640,767	+				-1.0
4,640,767	+				+0.2
4,640,767	+				+0.2
4,640,767	+				-1.0
4,640,768	-				+0.4
4,640,768	-				-0.8
4,640,768	-				-0.8
4,640,771	+				-0.6
4,640,772	+				+1.8
4,640,772	+				-1.9
4,640,772	+				+0.8
4,640,773	-				-2.3
4,640,773	-				-0.5
4,640,773	-				+0.5
4,640,773	-				-0.6
4,640,783	+				-2.1
4,640,783	+				+1.1
4,640,784	-				+0.1
4,640,784	-				-0.3
4,640,784	-				-1.8
4,640,784	-				-0.9
4,640,793	+				-0.3
4,640,808	+				+0.9
4,640,838	+				+0.3
4,640,867	+				-1.4
4,640,867	+				-0.1
4,640,867	+				+2.6
4,640,868	-				-0.6
4,640,868	-				+0.4
4,640,886	+				+0.1
4,640,886	+				-1.2
4,640,886	+				-1.1
4,640,887	-				-0.7
4,640,887	-				-1.0
4,640,887	-				-0.6
4,640,938	-		DDA3937_RS20375	0.11	-0.2
4,641,004	+		DDA3937_RS20375	0.18	-1.8
4,641,004	+		DDA3937_RS20375	0.18	-0.6
4,641,004	+		DDA3937_RS20375	0.18	-0.5
4,641,004	+		DDA3937_RS20375	0.18	-1.9
4,641,004	+		DDA3937_RS20375	0.18	+2.0
4,641,004	+		DDA3937_RS20375	0.18	+0.4
4,641,005	-				-1.1
4,641,005	-		DDA3937_RS20375	0.19	+0.1
4,641,005	-		DDA3937_RS20375	0.19	+1.0
4,641,074	+		DDA3937_RS20375	0.27	-0.3
4,641,074	+		DDA3937_RS20375	0.27	-0.1
4,641,075	-		DDA3937_RS20375	0.27	+0.4
4,641,075	-		DDA3937_RS20375	0.27	+2.2
4,641,075	-		DDA3937_RS20375	0.27	+0.1
4,641,112	-		DDA3937_RS20375	0.32	+1.1
4,641,121	+		DDA3937_RS20375	0.33	+0.3
4,641,121	+		DDA3937_RS20375	0.33	+0.7
4,641,121	+		DDA3937_RS20375	0.33	-0.2
4,641,122	-		DDA3937_RS20375	0.33	-0.0
4,641,145	+		DDA3937_RS20375	0.36	+2.7
4,641,145	+		DDA3937_RS20375	0.36	+0.9
4,641,145	+		DDA3937_RS20375	0.36	+0.2
4,641,146	-		DDA3937_RS20375	0.36	-0.2
4,641,146	-		DDA3937_RS20375	0.36	+3.4
4,641,172	+		DDA3937_RS20375	0.39	-0.1
4,641,172	+		DDA3937_RS20375	0.39	-2.0
4,641,172	+		DDA3937_RS20375	0.39	-0.3
4,641,172	+		DDA3937_RS20375	0.39	-0.3
4,641,173	-		DDA3937_RS20375	0.39	-0.3
4,641,233	+		DDA3937_RS20375	0.46	-0.7
4,641,327	+		DDA3937_RS20375	0.57	-0.4
4,641,327	+		DDA3937_RS20375	0.57	-0.2
4,641,327	+		DDA3937_RS20375	0.57	-2.7
4,641,337	+		DDA3937_RS20375	0.59	+0.2
4,641,469	+		DDA3937_RS20375	0.75	-0.8
4,641,483	+		DDA3937_RS20375	0.76	-0.5
4,641,483	+				+1.2
4,641,484	-		DDA3937_RS20375	0.76	-0.3
4,641,484	-		DDA3937_RS20375	0.76	-0.4
4,641,484	-		DDA3937_RS20375	0.76	-0.5
4,641,596	-				+0.2
4,641,608	-				-0.2
4,641,676	+				+0.3
4,641,677	-				-0.1
4,641,839	-				+0.2
4,641,839	-				-1.1
4,641,839	-				-0.8
4,641,843	+				-0.4
4,641,843	+				-0.7
4,641,844	-				-0.4
4,641,883	+				-0.4
4,641,967	+				+0.5
4,641,967	+				-0.3
4,641,968	-				-0.5
4,642,007	+				-1.8
4,642,007	+				-0.2
4,642,039	-				+0.6
4,642,039	-				-2.2
4,642,494	+		DDA3937_RS20380	0.29	-0.1
4,642,494	+		DDA3937_RS20380	0.29	-0.3
4,642,494	+		DDA3937_RS20380	0.29	+0.3
4,642,494	+		DDA3937_RS20380	0.29	-0.2
4,642,495	-		DDA3937_RS20380	0.29	+0.0
4,642,495	-		DDA3937_RS20380	0.29	-1.3
4,642,495	-		DDA3937_RS20380	0.29	-0.5
4,642,495	-		DDA3937_RS20380	0.29	-0.6
4,642,495	-		DDA3937_RS20380	0.29	-0.8
4,642,575	+		DDA3937_RS20380	0.32	-0.3
4,642,575	+		DDA3937_RS20380	0.32	+0.7
4,642,576	-		DDA3937_RS20380	0.32	-0.5
4,642,576	-		DDA3937_RS20380	0.32	-1.6
4,642,576	-		DDA3937_RS20380	0.32	-0.5
4,642,576	-		DDA3937_RS20380	0.32	-0.9
4,642,633	-		DDA3937_RS20380	0.35	-1.1
4,642,633	-		DDA3937_RS20380	0.35	-0.1
4,642,648	+		DDA3937_RS20380	0.36	+0.2
4,642,649	-		DDA3937_RS20380	0.36	-1.3
4,642,673	+		DDA3937_RS20380	0.37	-0.0
4,642,673	+		DDA3937_RS20380	0.37	+1.8
4,642,674	-		DDA3937_RS20380	0.37	-1.8
4,642,674	-		DDA3937_RS20380	0.37	+0.3
4,642,674	-		DDA3937_RS20380	0.37	-0.7
4,642,674	-		DDA3937_RS20380	0.37	+1.2
4,642,674	-		DDA3937_RS20380	0.37	+0.1