Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19880

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,527,706	+		DDA3937_RS19875	0.41	-1.3
4,527,796	+		DDA3937_RS19875	0.50	-1.7
4,527,796	+		DDA3937_RS19875	0.50	-1.4
4,527,815	+		DDA3937_RS19875	0.52	-1.3
4,527,815	+		DDA3937_RS19875	0.52	-0.5
4,527,815	+		DDA3937_RS19875	0.52	-2.2
4,527,815	+		DDA3937_RS19875	0.52	-1.5
4,527,816	-		DDA3937_RS19875	0.52	-2.0
4,527,816	-		DDA3937_RS19875	0.52	-0.8
4,527,816	-		DDA3937_RS19875	0.52	+0.5
4,527,816	-		DDA3937_RS19875	0.52	-0.4
4,527,816	-		DDA3937_RS19875	0.52	-2.6
4,527,881	+		DDA3937_RS19875	0.59	-2.8
4,527,963	+		DDA3937_RS19875	0.68	+0.5
4,527,963	+		DDA3937_RS19875	0.68	-1.2
4,527,964	-		DDA3937_RS19875	0.68	-0.9
4,527,964	-		DDA3937_RS19875	0.68	+0.4
4,527,964	-		DDA3937_RS19875	0.68	-0.8
4,527,965	+		DDA3937_RS19875	0.68	-0.2
4,527,966	-		DDA3937_RS19875	0.68	-0.1
4,527,966	-		DDA3937_RS19875	0.68	-0.8
4,528,005	+		DDA3937_RS19875	0.72	+1.8
4,528,032	-		DDA3937_RS19875	0.75	-1.3
4,528,269	+				-1.5
4,528,269	+				+0.3
4,528,270	-				-1.2
4,528,270	-				-0.5
4,528,436	+				-0.9
4,528,437	-				+0.2
4,528,437	-				-1.3
4,528,449	+				-1.5
4,528,449	+				-2.1
4,528,450	-				+0.8
4,528,450	-				-0.6
4,528,450	-				-1.0
4,528,456	+				-1.5
4,528,511	+				-1.8
4,528,512	-				-2.3
4,528,570	+				-1.9
4,528,570	+				-0.6
4,528,571	-				-0.6
4,528,571	-				-0.4
4,528,571	-				+0.6
4,528,571	-				+1.2
4,528,640	+				-1.6
4,528,640	+				+1.9
4,528,640	+				-0.3
4,528,640	+				-0.3
4,528,641	-				+0.1
4,528,641	-				+0.1
4,528,662	-				-0.8
4,528,791	+				+0.3
4,528,791	+				+0.8
4,528,792	-				-0.1
4,528,793	+				+0.2
4,528,794	-				-1.2
4,528,794	-				-0.3
4,528,906	-		DDA3937_RS19880	0.12	-1.1
4,528,940	+		DDA3937_RS19880	0.14	-1.1
4,528,940	+		DDA3937_RS19880	0.14	-0.5
4,528,962	-		DDA3937_RS19880	0.15	-3.3
4,528,972	+		DDA3937_RS19880	0.15	+0.6
4,529,003	+				-0.8
4,529,003	+		DDA3937_RS19880	0.17	+0.8
4,529,140	+		DDA3937_RS19880	0.23	+0.2
4,529,141	-		DDA3937_RS19880	0.23	-1.3
4,529,321	+				-1.1
4,529,321	+		DDA3937_RS19880	0.32	-1.1
4,529,322	-		DDA3937_RS19880	0.32	+0.9
4,529,322	-		DDA3937_RS19880	0.32	-1.3
4,529,322	-				+1.2
4,529,377	+		DDA3937_RS19880	0.34	-0.5
4,529,621	+		DDA3937_RS19880	0.45	-2.1
4,529,622	-		DDA3937_RS19880	0.45	-0.9
4,529,841	-		DDA3937_RS19880	0.56	-0.5
4,529,937	+		DDA3937_RS19880	0.60	-2.3
4,529,954	+		DDA3937_RS19880	0.61	-1.5
4,530,012	+		DDA3937_RS19880	0.63	-0.5
4,530,042	-		DDA3937_RS19880	0.65	-1.6
4,530,113	+				-0.8
4,530,120	+		DDA3937_RS19880	0.68	+3.2
4,530,120	+				-0.3
4,530,120	+		DDA3937_RS19880	0.68	-1.9
4,530,130	-		DDA3937_RS19880	0.69	-2.1
4,530,159	+		DDA3937_RS19880	0.70	-0.8
4,530,160	-		DDA3937_RS19880	0.70	-1.9
4,530,187	-		DDA3937_RS19880	0.72	-1.3
4,530,187	-		DDA3937_RS19880	0.72	-2.5
4,530,227	-		DDA3937_RS19880	0.73	-2.9
4,530,273	-		DDA3937_RS19880	0.76	+0.2
4,530,281	+		DDA3937_RS19880	0.76	-2.1
4,530,317	+		DDA3937_RS19880	0.78	-2.7
4,530,318	-				+1.2
4,530,368	+		DDA3937_RS19880	0.80	-1.6
4,530,368	+		DDA3937_RS19880	0.80	-3.1
4,530,369	-		DDA3937_RS19880	0.80	-1.0
4,530,369	-		DDA3937_RS19880	0.80	-2.1
4,530,639	-				-1.1
4,530,639	-				-1.1
4,530,722	-				-2.7
4,530,766	-				-1.3
4,530,766	-				-1.1
4,530,793	+				-1.6
4,530,793	+				-0.3
4,530,793	+				-0.3
4,530,794	-				-0.5
4,530,801	+				+0.6
4,530,802	-				+0.8
4,530,802	-				-0.8
4,530,866	-				+0.0
4,530,867	+				-0.6
4,530,868	-				-0.3
4,530,870	-				+0.1
4,530,875	-				-0.9
4,530,889	+				-0.5
4,530,892	-				-0.7
4,530,892	-				-0.2
4,530,892	-				+0.7
4,530,892	-				-1.8
4,530,927	+				-1.1
4,530,984	-		DDA3937_RS19885	0.13	-0.2
4,530,999	+		DDA3937_RS19885	0.15	+0.8
4,530,999	+		DDA3937_RS19885	0.15	-0.5
4,530,999	+		DDA3937_RS19885	0.15	-0.1
4,530,999	+		DDA3937_RS19885	0.15	-0.5
4,531,000	-		DDA3937_RS19885	0.16	+0.2
4,531,000	-		DDA3937_RS19885	0.16	-1.3
4,531,008	-				-0.3
4,531,099	+				+2.6
4,531,099	+		DDA3937_RS19885	0.29	-0.1
4,531,099	+		DDA3937_RS19885	0.29	-1.0
4,531,099	+		DDA3937_RS19885	0.29	+0.3
4,531,099	+		DDA3937_RS19885	0.29	-0.0
4,531,099	+		DDA3937_RS19885	0.29	-1.3
4,531,099	+		DDA3937_RS19885	0.29	+1.0
4,531,100	-		DDA3937_RS19885	0.30	+0.1
4,531,100	-		DDA3937_RS19885	0.30	-0.1
4,531,100	-		DDA3937_RS19885	0.30	-1.6
4,531,100	-		DDA3937_RS19885	0.30	-0.6
4,531,100	-		DDA3937_RS19885	0.30	-0.9
4,531,103	+		DDA3937_RS19885	0.30	-0.3
4,531,103	+		DDA3937_RS19885	0.30	-0.8
4,531,103	+		DDA3937_RS19885	0.30	+0.1
4,531,103	+		DDA3937_RS19885	0.30	-2.8
4,531,103	+		DDA3937_RS19885	0.30	+0.2
4,531,103	+		DDA3937_RS19885	0.30	-0.6
4,531,103	+		DDA3937_RS19885	0.30	-0.0
4,531,103	+		DDA3937_RS19885	0.30	-0.2
4,531,103	+		DDA3937_RS19885	0.30	-0.5
4,531,103	+		DDA3937_RS19885	0.30	-1.8
4,531,103	+		DDA3937_RS19885	0.30	-0.8
4,531,103	+		DDA3937_RS19885	0.30	-3.2
4,531,103	+		DDA3937_RS19885	0.30	+0.1
4,531,103	+		DDA3937_RS19885	0.30	+0.3
4,531,104	-		DDA3937_RS19885	0.30	-1.1
4,531,104	-		DDA3937_RS19885	0.30	+0.5
4,531,104	-		DDA3937_RS19885	0.30	+0.1
4,531,104	-		DDA3937_RS19885	0.30	+0.7
4,531,104	-				+1.2
4,531,159	+		DDA3937_RS19885	0.38	-1.1
4,531,244	+		DDA3937_RS19885	0.50	+0.6
4,531,244	+		DDA3937_RS19885	0.50	+0.4
4,531,244	+		DDA3937_RS19885	0.50	-0.8
4,531,244	+		DDA3937_RS19885	0.50	+0.9
4,531,245	-		DDA3937_RS19885	0.50	-0.6
4,531,245	-		DDA3937_RS19885	0.50	-0.5
4,531,245	-		DDA3937_RS19885	0.50	-1.8
4,531,365	+		DDA3937_RS19885	0.67	+0.4
4,531,365	+		DDA3937_RS19885	0.67	+0.1
4,531,365	+		DDA3937_RS19885	0.67	-1.1
4,531,365	+		DDA3937_RS19885	0.67	-0.3
4,531,365	+		DDA3937_RS19885	0.67	-1.1
4,531,366	-		DDA3937_RS19885	0.67	+0.1
4,531,366	-		DDA3937_RS19885	0.67	-0.9
4,531,366	-		DDA3937_RS19885	0.67	-0.0
4,531,399	+		DDA3937_RS19885	0.71	-1.8
4,531,399	+		DDA3937_RS19885	0.71	-1.1
4,531,399	+		DDA3937_RS19885	0.71	-1.6
4,531,400	-		DDA3937_RS19885	0.71	+0.7
4,531,400	-		DDA3937_RS19885	0.71	-0.8
4,531,480	+		DDA3937_RS19885	0.83	-1.0
4,531,480	+				+2.2
4,531,480	+		DDA3937_RS19885	0.83	-0.9
4,531,480	+		DDA3937_RS19885	0.83	-0.7
4,531,480	+		DDA3937_RS19885	0.83	-0.4
4,531,480	+		DDA3937_RS19885	0.83	-0.7
4,531,480	+		DDA3937_RS19885	0.83	-1.3
4,531,480	+		DDA3937_RS19885	0.83	+0.5
4,531,481	-		DDA3937_RS19885	0.83	-0.7
4,531,481	-		DDA3937_RS19885	0.83	-0.9
4,531,481	-		DDA3937_RS19885	0.83	+1.7
4,531,481	-		DDA3937_RS19885	0.83	-1.1
4,531,481	-		DDA3937_RS19885	0.83	-0.2
4,531,481	-				+1.7
4,531,531	+		DDA3937_RS19885	0.90	-0.8
4,531,531	+		DDA3937_RS19885	0.90	-0.3
4,531,531	+		DDA3937_RS19885	0.90	+0.4
4,531,531	+		DDA3937_RS19885	0.90	-1.3
4,531,531	+		DDA3937_RS19885	0.90	-0.3
4,531,531	+		DDA3937_RS19885	0.90	+0.4
4,531,531	+		DDA3937_RS19885	0.90	-0.3
4,531,532	-		DDA3937_RS19885	0.90	-0.1
4,531,532	-		DDA3937_RS19885	0.90	-0.8
4,531,532	-		DDA3937_RS19885	0.90	+0.0
4,531,532	-		DDA3937_RS19885	0.90	-1.8
4,531,532	-		DDA3937_RS19885	0.90	+0.5
4,531,532	-		DDA3937_RS19885	0.90	-0.3
4,531,532	-		DDA3937_RS19885	0.90	-0.5
4,531,532	-		DDA3937_RS19885	0.90	-0.5
4,531,536	-				+0.3
4,531,536	-				-0.8
4,531,536	-				-0.1
4,531,536	-				-0.1
4,531,540	+				-0.8
4,531,540	+				-0.3
4,531,600	+				-0.7
4,531,600	+				-0.8
4,531,600	+				-0.8
4,531,600	+				+1.2
4,531,601	-				-0.1
4,531,612	+				-0.1
4,531,613	-				-0.4
4,531,613	-				-0.3