Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19785

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,504,475	+		DDA3937_RS19775	0.83	+0.4
4,504,475	+		DDA3937_RS19775	0.83	-0.4
4,504,475	+		DDA3937_RS19775	0.83	+0.8
4,504,476	-		DDA3937_RS19775	0.83	-1.6
4,504,637	-				-0.8
4,504,801	+				-0.8
4,504,801	+				-1.8
4,504,802	-				-1.1
4,504,802	-				-1.2
4,504,838	+				-1.7
4,504,840	+				-0.5
4,504,840	+				-0.2
4,504,840	+				-2.2
4,504,840	+				-0.5
4,504,841	-				-1.6
4,504,841	-				+2.2
4,504,881	-				-1.5
4,504,915	+				-1.4
4,504,915	+				+0.0
4,504,915	+				+0.8
4,504,916	-				-1.2
4,504,944	+				+1.4
4,504,959	+				-2.8
4,504,960	-				-0.6
4,504,960	-				+0.5
4,504,962	+				-0.0
4,504,963	-				-1.2
4,505,254	+		DDA3937_RS19780	0.60	-0.4
4,505,380	-		DDA3937_RS19780	0.84	+0.2
4,505,394	+		DDA3937_RS19780	0.87	-0.5
4,505,475	+				-0.8
4,505,475	+				+0.2
4,505,833	-		DDA3937_RS19785	0.36	-0.8
4,505,886	-		DDA3937_RS19785	0.41	-0.9
4,505,916	+				+0.2
4,505,916	+		DDA3937_RS19785	0.44	-2.5
4,505,917	-		DDA3937_RS19785	0.44	-1.6
4,505,949	+				-0.8
4,505,950	-		DDA3937_RS19785	0.48	-1.5
4,506,117	+		DDA3937_RS19785	0.64	+0.6
4,506,169	-		DDA3937_RS19785	0.70	-0.9
4,506,169	-		DDA3937_RS19785	0.70	-4.2
4,506,329	+				+0.2
4,506,330	-		DDA3937_RS19785	0.86	+0.2
4,506,507	+				-1.8
4,506,507	+				-1.0
4,506,508	-				-1.8
4,506,530	+				-1.6
4,506,530	+				+0.5
4,506,530	+				-0.9
4,506,530	+				-0.4
4,506,531	-				+0.8
4,506,534	+				+0.7
4,506,535	-				-1.6
4,506,550	-				-0.4
4,506,551	+				-0.5
4,506,551	+				-0.9
4,506,566	+				-1.4
4,506,580	+				-0.4
4,506,583	+				-0.7
4,506,596	+				-0.8
4,506,601	-				-0.7
4,506,602	+				+1.0
4,506,623	-				-1.2
4,506,629	+				+0.4
4,506,651	+				-0.9
4,506,651	+				-0.3
4,506,651	+				+1.2
4,506,651	+				+0.7
4,506,652	-				+0.4
4,506,653	+				-1.9
4,506,653	+				+1.7
4,506,653	+				-0.8
4,506,653	+				+1.1
4,506,653	+				-1.5
4,506,653	+				-0.9
4,506,653	+				+0.8
4,506,653	+				-0.6
4,506,653	+				-0.4
4,506,653	+				-1.1
4,506,653	+				-1.2
4,506,653	+				-0.1
4,506,653	+				-1.0
4,506,653	+				+4.3
4,506,653	+				-0.2
4,506,653	+				-0.1
4,506,654	-				-0.4
4,506,654	-				-1.4
4,506,654	-				-0.6
4,506,654	-				+0.1
4,506,654	-				+0.4
4,506,654	-				+2.2
4,506,654	-				+0.5
4,506,654	-				-1.9
4,506,654	-				-0.8
4,506,655	+				-0.4
4,506,655	+				-1.8
4,506,656	-				-0.8
4,506,656	-				-0.2
4,506,656	-				-0.9
4,506,656	-				+2.1
4,506,656	-				+0.3
4,506,656	-				+2.6
4,506,665	-				+0.9
4,506,675	-				-0.4
4,506,675	-				+0.9
4,506,734	+				-1.1
4,506,734	+				-1.2
4,506,737	+				-1.1
4,506,773	+				-1.4
4,506,776	-				-0.7
4,506,797	+				-1.1
4,506,800	-				-2.1
4,506,802	+				-0.9
4,506,802	+				+0.6
4,506,803	-				+0.4
4,506,805	+				-0.9
4,506,805	+				+1.2
4,506,814	-				-1.5
4,506,818	-				-0.2
4,506,832	-				-1.9
4,506,834	+				-0.5
4,506,836	+				-0.1
4,506,836	+				-0.5
4,506,837	-				-1.1
4,506,840	+				-1.2
4,506,840	+				-1.6
4,506,850	+				-0.9
4,506,850	+				-0.2
4,506,851	-				-0.4
4,506,851	-				+2.2
4,506,859	+				+0.5
4,506,859	+				-1.3
4,506,859	+				-0.1
4,506,860	-				-0.3
4,506,860	-				-1.4
4,506,867	+				-1.9
4,506,868	-				+0.1
4,506,878	+				-1.6
4,506,916	-				-1.3
4,506,971	-				-0.0
4,507,002	-				+0.4
4,507,023	+				-0.6
4,507,023	+				+0.4
4,507,023	+				-1.4
4,507,023	+				-0.0
4,507,024	-				+1.7
4,507,024	-				-1.9
4,507,024	-				+1.6
4,507,024	-				-0.2
4,507,126	+				+0.9
4,507,126	+				+3.2
4,507,126	+				+0.2
4,507,127	-				+0.6
4,507,127	-				-0.4
4,507,127	-				+1.1
4,507,127	-				-0.1
4,507,127	-				-2.8
4,507,127	-				-0.7
4,507,127	-				+0.1
4,507,127	-				+0.2
4,507,127	-				+0.2
4,507,129	+				-1.8
4,507,129	+				-0.6
4,507,129	+				-0.8
4,507,300	+		DDA3937_RS19790	0.21	-1.7
4,507,304	+		DDA3937_RS19790	0.21	+1.7
4,507,304	+		DDA3937_RS19790	0.21	+0.0
4,507,305	-		DDA3937_RS19790	0.21	+1.4
4,507,313	+		DDA3937_RS19790	0.22	-0.4
4,507,313	+		DDA3937_RS19790	0.22	-0.8
4,507,313	+		DDA3937_RS19790	0.22	-0.4
4,507,313	+		DDA3937_RS19790	0.22	-0.8
4,507,313	+		DDA3937_RS19790	0.22	-0.8
4,507,313	+		DDA3937_RS19790	0.22	+0.2
4,507,314	-		DDA3937_RS19790	0.23	+0.1
4,507,314	-		DDA3937_RS19790	0.23	+0.4
4,507,314	-		DDA3937_RS19790	0.23	+0.2
4,507,314	-		DDA3937_RS19790	0.23	-0.4
4,507,314	-		DDA3937_RS19790	0.23	-0.6
4,507,314	-		DDA3937_RS19790	0.23	-1.6
4,507,314	-		DDA3937_RS19790	0.23	+0.0
4,507,315	+		DDA3937_RS19790	0.23	+0.6
4,507,315	+		DDA3937_RS19790	0.23	+0.1
4,507,315	+		DDA3937_RS19790	0.23	-0.1
4,507,315	+		DDA3937_RS19790	0.23	+0.3
4,507,315	+		DDA3937_RS19790	0.23	+2.0
4,507,316	-		DDA3937_RS19790	0.23	-1.0
4,507,316	-		DDA3937_RS19790	0.23	+0.8
4,507,316	-		DDA3937_RS19790	0.23	-0.6
4,507,316	-		DDA3937_RS19790	0.23	-0.9
4,507,343	-		DDA3937_RS19790	0.26	+2.1
4,507,343	-		DDA3937_RS19790	0.26	+0.8
4,507,343	-		DDA3937_RS19790	0.26	-0.6
4,507,343	-		DDA3937_RS19790	0.26	+0.5
4,507,360	+		DDA3937_RS19790	0.28	-0.7
4,507,360	+		DDA3937_RS19790	0.28	-0.8
4,507,361	-		DDA3937_RS19790	0.28	-0.4
4,507,361	-		DDA3937_RS19790	0.28	-0.6
4,507,361	-		DDA3937_RS19790	0.28	-0.5
4,507,361	-		DDA3937_RS19790	0.28	-0.6
4,507,438	+		DDA3937_RS19790	0.38	+1.6
4,507,438	+		DDA3937_RS19790	0.38	-1.4
4,507,439	-		DDA3937_RS19790	0.38	+0.6
4,507,461	+		DDA3937_RS19790	0.41	+0.2
4,507,462	-		DDA3937_RS19790	0.41	-0.7
4,507,462	-		DDA3937_RS19790	0.41	-0.3