Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18280

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,173,531	-				-1.9
4,173,531	-				-2.0
4,173,531	-				-3.1
4,173,531	-				-2.3
4,173,534	+				-0.6
4,173,534	+				+0.7
4,173,534	+				-2.0
4,173,534	+				+0.0
4,173,534	+				-0.8
4,173,535	-				-0.6
4,173,535	-				-1.1
4,173,535	-				-3.4
4,173,535	-				-2.4
4,173,535	-				-2.5
4,173,535	-				-2.5
4,173,535	-				-3.2
4,173,535	-				-0.8
4,173,675	+		DDA3937_RS18275	0.18	-2.5
4,173,675	+		DDA3937_RS18275	0.18	-2.3
4,173,676	-		DDA3937_RS18275	0.18	-3.0
4,173,676	-		DDA3937_RS18275	0.18	-3.0
4,173,744	+		DDA3937_RS18275	0.26	+0.9
4,173,744	+		DDA3937_RS18275	0.26	+0.2
4,173,744	+		DDA3937_RS18275	0.26	-1.7
4,173,745	-		DDA3937_RS18275	0.26	-1.3
4,173,745	-		DDA3937_RS18275	0.26	-0.6
4,173,829	+		DDA3937_RS18275	0.36	-1.6
4,173,966	+		DDA3937_RS18275	0.52	-0.7
4,173,967	-		DDA3937_RS18275	0.52	-2.1
4,173,967	-		DDA3937_RS18275	0.52	-2.2
4,173,990	+		DDA3937_RS18275	0.55	-1.2
4,173,990	+		DDA3937_RS18275	0.55	-2.3
4,173,990	+		DDA3937_RS18275	0.55	-3.6
4,173,990	+		DDA3937_RS18275	0.55	-2.4
4,173,991	-		DDA3937_RS18275	0.55	-0.6
4,173,991	-		DDA3937_RS18275	0.55	-2.2
4,173,991	-		DDA3937_RS18275	0.55	-2.4
4,173,991	-		DDA3937_RS18275	0.55	-0.9
4,174,060	+		DDA3937_RS18275	0.63	-1.2
4,174,060	+		DDA3937_RS18275	0.63	-2.0
4,174,060	+		DDA3937_RS18275	0.63	-1.2
4,174,060	+		DDA3937_RS18275	0.63	-2.0
4,174,060	+		DDA3937_RS18275	0.63	-1.4
4,174,060	+		DDA3937_RS18275	0.63	-0.8
4,174,060	+		DDA3937_RS18275	0.63	-2.3
4,174,061	-		DDA3937_RS18275	0.64	-2.2
4,174,061	-		DDA3937_RS18275	0.64	-1.4
4,174,061	-		DDA3937_RS18275	0.64	-1.9
4,174,065	-		DDA3937_RS18275	0.64	-0.8
4,174,077	+		DDA3937_RS18275	0.65	-0.8
4,174,185	+		DDA3937_RS18275	0.78	-2.9
4,174,223	+		DDA3937_RS18275	0.83	-2.0
4,174,245	+		DDA3937_RS18275	0.85	-1.3
4,174,245	+		DDA3937_RS18275	0.85	-3.2
4,174,245	+		DDA3937_RS18275	0.85	-2.2
4,174,246	-		DDA3937_RS18275	0.86	-1.5
4,174,312	-				-2.2
4,174,370	+				-0.9
4,174,415	+				-0.5
4,174,416	-				-0.3
4,174,416	-				+1.2
4,174,416	-				+0.2
4,174,423	+				-0.3
4,174,423	+				+1.2
4,174,424	-				-0.4
4,174,424	-				-0.8
4,174,424	-				+0.0
4,174,501	-				-1.5
4,174,501	-				-0.3
4,174,620	+				-0.6
4,174,634	-				+0.3
4,174,634	-				-2.7
4,174,659	+		DDA3937_RS18280	0.12	-0.0
4,174,660	-		DDA3937_RS18280	0.12	-0.1
4,174,663	+		DDA3937_RS18280	0.12	+1.8
4,174,664	-		DDA3937_RS18280	0.12	-0.7
4,174,665	-		DDA3937_RS18280	0.13	-1.2
4,174,681	-		DDA3937_RS18280	0.14	+0.3
4,174,700	-		DDA3937_RS18280	0.16	-2.0
4,174,743	-		DDA3937_RS18280	0.20	-0.8
4,174,813	+		DDA3937_RS18280	0.26	-0.4
4,174,814	-		DDA3937_RS18280	0.26	-0.1
4,174,887	+		DDA3937_RS18280	0.33	-0.6
4,174,887	+		DDA3937_RS18280	0.33	+0.6
4,174,950	+		DDA3937_RS18280	0.39	+1.5
4,174,951	-		DDA3937_RS18280	0.39	+0.7
4,174,990	-		DDA3937_RS18280	0.43	+0.2
4,175,020	-		DDA3937_RS18280	0.46	-1.4
4,175,020	-		DDA3937_RS18280	0.46	+2.7
4,175,061	+		DDA3937_RS18280	0.49	-0.2
4,175,062	-		DDA3937_RS18280	0.50	-0.6
4,175,105	+		DDA3937_RS18280	0.54	-2.2
4,175,106	-		DDA3937_RS18280	0.54	-0.0
4,175,108	+		DDA3937_RS18280	0.54	-1.4
4,175,108	+		DDA3937_RS18280	0.54	+0.8
4,175,172	-		DDA3937_RS18280	0.60	+2.4
4,175,204	+		DDA3937_RS18280	0.63	-0.2
4,175,205	-		DDA3937_RS18280	0.63	-0.7
4,175,212	+		DDA3937_RS18280	0.64	+0.5
4,175,212	+		DDA3937_RS18280	0.64	+0.6
4,175,252	+		DDA3937_RS18280	0.67	-0.2
4,175,305	-		DDA3937_RS18280	0.72	-0.7
4,175,401	-		DDA3937_RS18280	0.81	+0.3
4,175,406	+		DDA3937_RS18280	0.82	-2.9
4,175,406	+		DDA3937_RS18280	0.82	-0.1
4,175,430	+		DDA3937_RS18280	0.84	-0.7
4,175,431	-		DDA3937_RS18280	0.84	-0.3
4,175,436	-		DDA3937_RS18280	0.85	+1.2
4,175,436	-		DDA3937_RS18280	0.85	-0.2
4,175,440	-		DDA3937_RS18280	0.85	+0.7
4,175,551	+				-0.5
4,175,552	-				-0.4
4,175,602	-				-0.8
4,175,603	+				-0.3
4,175,603	+				-0.9
4,175,604	-				-0.8
4,175,604	-				-2.4
4,175,604	-				+2.7
4,175,604	-				-1.2
4,175,618	-				-0.3
4,175,632	+				+1.6
4,175,633	-				-1.4
4,175,634	+				-1.3
4,175,635	-				-0.6
4,175,643	+				+0.8
4,175,643	+				+0.8
4,175,644	-				-0.8
4,175,644	-				-0.2
4,175,687	+				+0.7
4,175,699	+				+0.5
4,175,739	-				-0.7
4,175,739	-				+0.4
4,175,775	+				+0.2
4,175,776	-				-2.3
4,175,784	-				-0.6
4,175,789	-				-0.4
4,175,789	-				-1.2
4,175,789	-				-0.4
4,175,797	+				-1.0
4,175,797	+				-0.4
4,175,798	-				-2.0
4,175,798	-				-1.6
4,175,846	+				-1.0
4,175,857	-				-1.0
4,175,871	+				+0.0
4,175,889	-				-0.4
4,175,896	+				-1.0
4,175,897	-				-1.3
4,175,956	-				+0.1
4,175,961	+				-1.6
4,175,961	+				-0.9
4,175,961	+				-0.2
4,175,961	+				-0.6
4,175,962	-				+0.1
4,175,962	-				-0.1
4,175,962	-				+0.9
4,175,962	-				-0.3
4,175,963	+				-1.6
4,175,963	+				+0.8
4,175,963	+				-0.1
4,175,963	+				-0.9
4,175,963	+				+1.5
4,175,964	-				+0.2
4,175,964	-				-0.4
4,175,964	-				+2.5
4,175,964	-				+1.2
4,175,964	-				-0.2
4,175,964	-				-0.6
4,175,964	-				-0.8
4,175,964	-				-0.6
4,175,967	+				-0.2
4,175,967	+				+0.1
4,175,967	+				-2.7
4,175,967	+				-1.1
4,175,967	+				+0.1
4,175,967	+				-1.3
4,175,968	-				+0.7
4,175,968	-				+0.0
4,175,968	-				-0.5
4,175,968	-				-0.1
4,175,968	-				-2.6
4,175,972	+				-0.4
4,175,973	-				+0.4
4,176,217	+		DDA3937_RS18285	0.39	+1.2
4,176,518	-				-1.4
4,176,532	+				+0.8
4,176,549	+				-2.6
4,176,549	+				-0.8
4,176,550	-				-0.6
4,176,550	-				+0.0
4,176,551	+				+1.0
4,176,552	-				+1.0
4,176,552	-				-0.4
4,176,576	+				-0.3
4,176,576	+				-0.5
4,176,600	+				-0.2