Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18265 and DDA3937_RS18270 are separated by 15 nucleotides DDA3937_RS18270 and DDA3937_RS18275 are separated by 6 nucleotides DDA3937_RS18275 and DDA3937_RS18280 are separated by 163 nucleotides
DDA3937_RS18265: DDA3937_RS18265 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 4,172,307 to 4,173,125
_RS18265
DDA3937_RS18270: DDA3937_RS18270 - Co2+/Mg2+ efflux protein ApaG, at 4,173,141 to 4,173,518
_RS18270
DDA3937_RS18275: DDA3937_RS18275 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 4,173,525 to 4,174,367
_RS18275
DDA3937_RS18280: DDA3937_RS18280 - acyltransferase, at 4,174,531 to 4,175,601
_RS18280
Position (kb) 4173
4174
4175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4172.652 kb on + strand, within DDA3937_RS18265 at 4172.691 kb on + strand, within DDA3937_RS18265 at 4172.691 kb on + strand, within DDA3937_RS18265 at 4172.691 kb on + strand, within DDA3937_RS18265 at 4172.694 kb on - strand, within DDA3937_RS18265 at 4172.802 kb on + strand, within DDA3937_RS18265 at 4172.805 kb on + strand, within DDA3937_RS18265 at 4172.805 kb on + strand, within DDA3937_RS18265 at 4172.984 kb on + strand, within DDA3937_RS18265 at 4173.123 kb on + strand at 4173.124 kb on - strand at 4173.164 kb on + strand at 4173.164 kb on + strand at 4173.164 kb on + strand at 4173.164 kb on + strand at 4173.165 kb on - strand at 4173.165 kb on - strand at 4173.165 kb on - strand at 4173.165 kb on - strand at 4173.166 kb on + strand at 4173.166 kb on + strand at 4173.166 kb on + strand at 4173.166 kb on + strand at 4173.166 kb on + strand at 4173.167 kb on - strand at 4173.167 kb on - strand at 4173.167 kb on - strand at 4173.184 kb on - strand, within DDA3937_RS18270 at 4173.184 kb on - strand, within DDA3937_RS18270 at 4173.231 kb on + strand, within DDA3937_RS18270 at 4173.232 kb on - strand, within DDA3937_RS18270 at 4173.232 kb on - strand, within DDA3937_RS18270 at 4173.233 kb on + strand, within DDA3937_RS18270 at 4173.233 kb on + strand, within DDA3937_RS18270 at 4173.234 kb on - strand, within DDA3937_RS18270 at 4173.243 kb on - strand, within DDA3937_RS18270 at 4173.243 kb on - strand, within DDA3937_RS18270 at 4173.297 kb on - strand, within DDA3937_RS18270 at 4173.297 kb on - strand, within DDA3937_RS18270 at 4173.297 kb on - strand, within DDA3937_RS18270 at 4173.435 kb on + strand, within DDA3937_RS18270 at 4173.479 kb on + strand, within DDA3937_RS18270 at 4173.480 kb on - strand, within DDA3937_RS18270 at 4173.485 kb on - strand at 4173.511 kb on + strand at 4173.511 kb on + strand at 4173.511 kb on + strand at 4173.512 kb on - strand at 4173.524 kb on + strand at 4173.524 kb on + strand at 4173.525 kb on - strand at 4173.525 kb on - strand at 4173.531 kb on - strand at 4173.531 kb on - strand at 4173.531 kb on - strand at 4173.531 kb on - strand at 4173.534 kb on + strand at 4173.534 kb on + strand at 4173.534 kb on + strand at 4173.534 kb on + strand at 4173.534 kb on + strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.535 kb on - strand at 4173.675 kb on + strand, within DDA3937_RS18275 at 4173.675 kb on + strand, within DDA3937_RS18275 at 4173.676 kb on - strand, within DDA3937_RS18275 at 4173.676 kb on - strand, within DDA3937_RS18275 at 4173.744 kb on + strand, within DDA3937_RS18275 at 4173.744 kb on + strand, within DDA3937_RS18275 at 4173.744 kb on + strand, within DDA3937_RS18275 at 4173.745 kb on - strand, within DDA3937_RS18275 at 4173.745 kb on - strand, within DDA3937_RS18275 at 4173.829 kb on + strand, within DDA3937_RS18275 at 4173.966 kb on + strand, within DDA3937_RS18275 at 4173.967 kb on - strand, within DDA3937_RS18275 at 4173.967 kb on - strand, within DDA3937_RS18275 at 4173.990 kb on + strand, within DDA3937_RS18275 at 4173.990 kb on + strand, within DDA3937_RS18275 at 4173.990 kb on + strand, within DDA3937_RS18275 at 4173.990 kb on + strand, within DDA3937_RS18275 at 4173.991 kb on - strand, within DDA3937_RS18275 at 4173.991 kb on - strand, within DDA3937_RS18275 at 4173.991 kb on - strand, within DDA3937_RS18275 at 4173.991 kb on - strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.060 kb on + strand, within DDA3937_RS18275 at 4174.061 kb on - strand, within DDA3937_RS18275 at 4174.061 kb on - strand, within DDA3937_RS18275 at 4174.061 kb on - strand, within DDA3937_RS18275 at 4174.065 kb on - strand, within DDA3937_RS18275 at 4174.077 kb on + strand, within DDA3937_RS18275 at 4174.185 kb on + strand, within DDA3937_RS18275 at 4174.223 kb on + strand, within DDA3937_RS18275 at 4174.245 kb on + strand, within DDA3937_RS18275 at 4174.245 kb on + strand, within DDA3937_RS18275 at 4174.245 kb on + strand, within DDA3937_RS18275 at 4174.246 kb on - strand, within DDA3937_RS18275 at 4174.312 kb on - strand at 4174.370 kb on + strand at 4174.415 kb on + strand at 4174.416 kb on - strand at 4174.416 kb on - strand at 4174.416 kb on - strand at 4174.423 kb on + strand at 4174.423 kb on + strand at 4174.424 kb on - strand at 4174.424 kb on - strand at 4174.424 kb on - strand at 4174.501 kb on - strand at 4174.501 kb on - strand at 4174.620 kb on + strand at 4174.634 kb on - strand at 4174.634 kb on - strand at 4174.659 kb on + strand, within DDA3937_RS18280 at 4174.660 kb on - strand, within DDA3937_RS18280 at 4174.663 kb on + strand, within DDA3937_RS18280 at 4174.664 kb on - strand, within DDA3937_RS18280 at 4174.665 kb on - strand, within DDA3937_RS18280 at 4174.681 kb on - strand, within DDA3937_RS18280 at 4174.700 kb on - strand, within DDA3937_RS18280 at 4174.743 kb on - strand, within DDA3937_RS18280 at 4174.813 kb on + strand, within DDA3937_RS18280 at 4174.814 kb on - strand, within DDA3937_RS18280 at 4174.887 kb on + strand, within DDA3937_RS18280 at 4174.887 kb on + strand, within DDA3937_RS18280 at 4174.950 kb on + strand, within DDA3937_RS18280 at 4174.951 kb on - strand, within DDA3937_RS18280 at 4174.990 kb on - strand, within DDA3937_RS18280 at 4175.020 kb on - strand, within DDA3937_RS18280 at 4175.020 kb on - strand, within DDA3937_RS18280 at 4175.061 kb on + strand, within DDA3937_RS18280 at 4175.062 kb on - strand, within DDA3937_RS18280 at 4175.105 kb on + strand, within DDA3937_RS18280 at 4175.106 kb on - strand, within DDA3937_RS18280 at 4175.108 kb on + strand, within DDA3937_RS18280 at 4175.108 kb on + strand, within DDA3937_RS18280 at 4175.172 kb on - strand, within DDA3937_RS18280 at 4175.204 kb on + strand, within DDA3937_RS18280 at 4175.205 kb on - strand, within DDA3937_RS18280 at 4175.212 kb on + strand, within DDA3937_RS18280 at 4175.212 kb on + strand, within DDA3937_RS18280 at 4175.252 kb on + strand, within DDA3937_RS18280 at 4175.305 kb on - strand, within DDA3937_RS18280
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,172,652 + DDA3937_RS18265 0.42 -0.4 4,172,691 + DDA3937_RS18265 0.47 +1.2 4,172,691 + DDA3937_RS18265 0.47 +0.6 4,172,691 + DDA3937_RS18265 0.47 +0.8 4,172,694 - DDA3937_RS18265 0.47 -2.9 4,172,802 + DDA3937_RS18265 0.60 +1.0 4,172,805 + DDA3937_RS18265 0.61 -0.8 4,172,805 + DDA3937_RS18265 0.61 +0.6 4,172,984 + DDA3937_RS18265 0.83 -0.9 4,173,123 + -1.0 4,173,124 - -2.0 4,173,164 + -1.6 4,173,164 + -0.6 4,173,164 + +0.7 4,173,164 + -1.5 4,173,165 - -0.8 4,173,165 - -0.5 4,173,165 - -0.4 4,173,165 - -2.0 4,173,166 + +1.0 4,173,166 + -1.1 4,173,166 + +0.2 4,173,166 + +0.5 4,173,166 + -1.8 4,173,167 - -1.6 4,173,167 - -1.5 4,173,167 - -1.2 4,173,184 - DDA3937_RS18270 0.11 -0.9 4,173,184 - DDA3937_RS18270 0.11 -1.6 4,173,231 + DDA3937_RS18270 0.24 -0.3 4,173,232 - DDA3937_RS18270 0.24 -2.8 4,173,232 - DDA3937_RS18270 0.24 +0.0 4,173,233 + DDA3937_RS18270 0.24 -1.4 4,173,233 + DDA3937_RS18270 0.24 -1.9 4,173,234 - DDA3937_RS18270 0.25 -1.2 4,173,243 - DDA3937_RS18270 0.27 -2.2 4,173,243 - DDA3937_RS18270 0.27 -1.3 4,173,297 - DDA3937_RS18270 0.41 -1.6 4,173,297 - DDA3937_RS18270 0.41 -0.6 4,173,297 - DDA3937_RS18270 0.41 -1.3 4,173,435 + DDA3937_RS18270 0.78 -0.1 4,173,479 + DDA3937_RS18270 0.89 +0.2 4,173,480 - DDA3937_RS18270 0.90 +0.6 4,173,485 - +0.0 4,173,511 + +3.2 4,173,511 + +0.7 4,173,511 + -0.6 4,173,512 - -1.4 4,173,524 + -2.0 4,173,524 + -0.6 4,173,525 - -1.2 4,173,525 - -3.2 4,173,531 - -1.9 4,173,531 - -2.0 4,173,531 - -3.1 4,173,531 - -2.3 4,173,534 + -0.6 4,173,534 + +0.7 4,173,534 + -2.0 4,173,534 + +0.0 4,173,534 + -0.8 4,173,535 - -0.6 4,173,535 - -1.1 4,173,535 - -3.4 4,173,535 - -2.4 4,173,535 - -2.5 4,173,535 - -2.5 4,173,535 - -3.2 4,173,535 - -0.8 4,173,675 + DDA3937_RS18275 0.18 -2.5 4,173,675 + DDA3937_RS18275 0.18 -2.3 4,173,676 - DDA3937_RS18275 0.18 -3.0 4,173,676 - DDA3937_RS18275 0.18 -3.0 4,173,744 + DDA3937_RS18275 0.26 +0.9 4,173,744 + DDA3937_RS18275 0.26 +0.2 4,173,744 + DDA3937_RS18275 0.26 -1.7 4,173,745 - DDA3937_RS18275 0.26 -1.3 4,173,745 - DDA3937_RS18275 0.26 -0.6 4,173,829 + DDA3937_RS18275 0.36 -1.6 4,173,966 + DDA3937_RS18275 0.52 -0.7 4,173,967 - DDA3937_RS18275 0.52 -2.1 4,173,967 - DDA3937_RS18275 0.52 -2.2 4,173,990 + DDA3937_RS18275 0.55 -1.2 4,173,990 + DDA3937_RS18275 0.55 -2.3 4,173,990 + DDA3937_RS18275 0.55 -3.6 4,173,990 + DDA3937_RS18275 0.55 -2.4 4,173,991 - DDA3937_RS18275 0.55 -0.6 4,173,991 - DDA3937_RS18275 0.55 -2.2 4,173,991 - DDA3937_RS18275 0.55 -2.4 4,173,991 - DDA3937_RS18275 0.55 -0.9 4,174,060 + DDA3937_RS18275 0.63 -1.2 4,174,060 + DDA3937_RS18275 0.63 -2.0 4,174,060 + DDA3937_RS18275 0.63 -1.2 4,174,060 + DDA3937_RS18275 0.63 -2.0 4,174,060 + DDA3937_RS18275 0.63 -1.4 4,174,060 + DDA3937_RS18275 0.63 -0.8 4,174,060 + DDA3937_RS18275 0.63 -2.3 4,174,061 - DDA3937_RS18275 0.64 -2.2 4,174,061 - DDA3937_RS18275 0.64 -1.4 4,174,061 - DDA3937_RS18275 0.64 -1.9 4,174,065 - DDA3937_RS18275 0.64 -0.8 4,174,077 + DDA3937_RS18275 0.65 -0.8 4,174,185 + DDA3937_RS18275 0.78 -2.9 4,174,223 + DDA3937_RS18275 0.83 -2.0 4,174,245 + DDA3937_RS18275 0.85 -1.3 4,174,245 + DDA3937_RS18275 0.85 -3.2 4,174,245 + DDA3937_RS18275 0.85 -2.2 4,174,246 - DDA3937_RS18275 0.86 -1.5 4,174,312 - -2.2 4,174,370 + -0.9 4,174,415 + -0.5 4,174,416 - -0.3 4,174,416 - +1.2 4,174,416 - +0.2 4,174,423 + -0.3 4,174,423 + +1.2 4,174,424 - -0.4 4,174,424 - -0.8 4,174,424 - +0.0 4,174,501 - -1.5 4,174,501 - -0.3 4,174,620 + -0.6 4,174,634 - +0.3 4,174,634 - -2.7 4,174,659 + DDA3937_RS18280 0.12 -0.0 4,174,660 - DDA3937_RS18280 0.12 -0.1 4,174,663 + DDA3937_RS18280 0.12 +1.8 4,174,664 - DDA3937_RS18280 0.12 -0.7 4,174,665 - DDA3937_RS18280 0.13 -1.2 4,174,681 - DDA3937_RS18280 0.14 +0.3 4,174,700 - DDA3937_RS18280 0.16 -2.0 4,174,743 - DDA3937_RS18280 0.20 -0.8 4,174,813 + DDA3937_RS18280 0.26 -0.4 4,174,814 - DDA3937_RS18280 0.26 -0.1 4,174,887 + DDA3937_RS18280 0.33 -0.6 4,174,887 + DDA3937_RS18280 0.33 +0.6 4,174,950 + DDA3937_RS18280 0.39 +1.5 4,174,951 - DDA3937_RS18280 0.39 +0.7 4,174,990 - DDA3937_RS18280 0.43 +0.2 4,175,020 - DDA3937_RS18280 0.46 -1.4 4,175,020 - DDA3937_RS18280 0.46 +2.7 4,175,061 + DDA3937_RS18280 0.49 -0.2 4,175,062 - DDA3937_RS18280 0.50 -0.6 4,175,105 + DDA3937_RS18280 0.54 -2.2 4,175,106 - DDA3937_RS18280 0.54 -0.0 4,175,108 + DDA3937_RS18280 0.54 -1.4 4,175,108 + DDA3937_RS18280 0.54 +0.8 4,175,172 - DDA3937_RS18280 0.60 +2.4 4,175,204 + DDA3937_RS18280 0.63 -0.2 4,175,205 - DDA3937_RS18280 0.63 -0.7 4,175,212 + DDA3937_RS18280 0.64 +0.5 4,175,212 + DDA3937_RS18280 0.64 +0.6 4,175,252 + DDA3937_RS18280 0.67 -0.2 4,175,305 - DDA3937_RS18280 0.72 -0.7
Or see this region's nucleotide sequence