Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18120

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,136,313	+		DDA3937_RS18115	0.37	-2.9
4,136,323	-		DDA3937_RS18115	0.38	-1.5
4,136,527	+		DDA3937_RS18115	0.51	-1.8
4,136,640	-		DDA3937_RS18115	0.58	-1.7
4,136,659	+		DDA3937_RS18115	0.59	-1.6
4,136,660	-		DDA3937_RS18115	0.59	-1.0
4,136,764	+		DDA3937_RS18115	0.66	-1.0
4,136,764	+		DDA3937_RS18115	0.66	-0.6
4,136,765	-		DDA3937_RS18115	0.66	-2.0
4,136,766	+				-1.2
4,136,766	+		DDA3937_RS18115	0.66	+0.8
4,136,766	+		DDA3937_RS18115	0.66	-2.6
4,136,767	-		DDA3937_RS18115	0.66	-1.7
4,136,779	+		DDA3937_RS18115	0.67	-1.3
4,136,779	+		DDA3937_RS18115	0.67	-1.8
4,136,780	-		DDA3937_RS18115	0.67	-1.7
4,136,780	-		DDA3937_RS18115	0.67	-1.4
4,136,780	-		DDA3937_RS18115	0.67	-0.7
4,136,797	+		DDA3937_RS18115	0.68	-1.9
4,136,900	-		DDA3937_RS18115	0.74	-1.2
4,136,900	-		DDA3937_RS18115	0.74	-0.9
4,136,900	-		DDA3937_RS18115	0.74	-0.1
4,136,911	+		DDA3937_RS18115	0.75	-0.1
4,136,911	+		DDA3937_RS18115	0.75	-0.9
4,136,911	+		DDA3937_RS18115	0.75	-0.0
4,136,911	+		DDA3937_RS18115	0.75	-0.7
4,136,912	-		DDA3937_RS18115	0.75	-1.6
4,136,912	-		DDA3937_RS18115	0.75	-2.6
4,137,023	+		DDA3937_RS18115	0.82	+1.1
4,137,023	+		DDA3937_RS18115	0.82	+0.9
4,137,024	-		DDA3937_RS18115	0.82	-0.9
4,137,024	-		DDA3937_RS18115	0.82	-2.4
4,137,024	-		DDA3937_RS18115	0.82	-0.4
4,137,024	-		DDA3937_RS18115	0.82	-2.1
4,137,025	+		DDA3937_RS18115	0.82	+0.0
4,137,025	+				+0.7
4,137,025	+				+2.5
4,137,026	-		DDA3937_RS18115	0.82	-2.8
4,137,026	-		DDA3937_RS18115	0.82	-1.7
4,137,026	-		DDA3937_RS18115	0.82	-2.3
4,137,073	+		DDA3937_RS18115	0.85	-1.3
4,137,074	-		DDA3937_RS18115	0.85	-2.0
4,137,074	-		DDA3937_RS18115	0.85	-2.7
4,137,137	-		DDA3937_RS18115	0.89	-0.4
4,137,212	+				-1.3
4,137,212	+				+3.2
4,137,212	+				-0.3
4,137,213	-				+0.7
4,137,213	-				-2.8
4,137,213	-				-0.7
4,137,215	+				-0.7
4,137,215	+				-0.2
4,137,216	-				-1.5
4,137,216	-				-1.4
4,137,216	-				-1.0
4,137,216	-				+0.3
4,137,216	-				-2.6
4,137,315	+				-0.4
4,137,315	+				-2.7
4,137,315	+				-2.8
4,137,316	-				-2.3
4,137,316	-				-0.7
4,137,316	-				-2.2
4,137,316	-				-4.4
4,137,316	-				+1.8
4,137,372	+				-0.3
4,137,373	-				-1.8
4,137,373	-				-2.0
4,137,373	-				-0.9
4,137,373	-				-0.1
4,137,373	-				-2.8
4,137,374	+				-1.3
4,137,375	-				-3.1
4,137,375	-				-2.2
4,137,379	+				-0.2
4,137,380	-				-2.8
4,137,430	-		DDA3937_RS18120	0.12	-2.8
4,137,430	-		DDA3937_RS18120	0.12	+0.1
4,137,430	-		DDA3937_RS18120	0.12	-0.5
4,137,437	-		DDA3937_RS18120	0.12	-2.0
4,137,437	-		DDA3937_RS18120	0.12	-0.9
4,137,642	+		DDA3937_RS18120	0.31	-2.0
4,137,642	+		DDA3937_RS18120	0.31	-3.2
4,137,643	-		DDA3937_RS18120	0.31	-2.5
4,137,735	+		DDA3937_RS18120	0.40	-0.9
4,137,735	+		DDA3937_RS18120	0.40	-1.9
4,137,736	-		DDA3937_RS18120	0.40	-2.1
4,137,764	+		DDA3937_RS18120	0.42	-3.7
4,137,774	+		DDA3937_RS18120	0.43	-1.0
4,137,774	+		DDA3937_RS18120	0.43	-2.8
4,137,774	+		DDA3937_RS18120	0.43	-1.0
4,137,774	+		DDA3937_RS18120	0.43	-1.4
4,137,775	-		DDA3937_RS18120	0.43	-4.1
4,137,775	-				+2.4
4,137,802	-		DDA3937_RS18120	0.46	-3.0
4,137,824	+		DDA3937_RS18120	0.48	-1.2
4,137,879	-		DDA3937_RS18120	0.53	-0.9
4,137,975	+		DDA3937_RS18120	0.62	-3.2
4,137,975	+		DDA3937_RS18120	0.62	-3.4
4,137,975	+		DDA3937_RS18120	0.62	-0.4
4,137,975	+		DDA3937_RS18120	0.62	-3.5
4,137,976	-		DDA3937_RS18120	0.62	-1.4
4,137,976	-		DDA3937_RS18120	0.62	-2.6
4,137,976	-		DDA3937_RS18120	0.62	-2.0
4,137,976	-		DDA3937_RS18120	0.62	-0.4
4,137,976	-		DDA3937_RS18120	0.62	-1.0
4,137,976	-		DDA3937_RS18120	0.62	-0.7
4,137,976	-		DDA3937_RS18120	0.62	-2.1
4,138,097	+		DDA3937_RS18120	0.73	-2.2
4,138,097	+		DDA3937_RS18120	0.73	-0.6
4,138,097	+		DDA3937_RS18120	0.73	-2.4
4,138,098	-		DDA3937_RS18120	0.73	-3.1
4,138,098	-		DDA3937_RS18120	0.73	-0.6
4,138,140	+		DDA3937_RS18120	0.77	-3.7
4,138,140	+		DDA3937_RS18120	0.77	-1.9
4,138,140	+		DDA3937_RS18120	0.77	-3.0
4,138,141	-		DDA3937_RS18120	0.77	-2.3
4,138,141	-		DDA3937_RS18120	0.77	+0.1
4,138,141	-		DDA3937_RS18120	0.77	-0.4
4,138,392	+				-0.6
4,138,410	+				-1.4
4,138,410	+				-1.1
4,138,410	+				-3.0
4,138,410	+				-3.1
4,138,410	+				-1.8
4,138,410	+				-3.3
4,138,410	+				-3.7
4,138,410	+				-2.1
4,138,410	+				-2.8
4,138,410	+				-1.4
4,138,411	-				-2.9
4,138,411	-				-0.9
4,138,411	-				-3.3
4,138,411	-				-3.6
4,138,411	-				-1.9
4,138,411	-				-4.4
4,138,411	-				-3.7
4,138,411	-				-2.6
4,138,411	-				-3.2
4,138,411	-				-0.9
4,138,412	+				-1.3
4,138,412	+				-2.0
4,138,441	-				-3.6
4,138,472	+				-4.0
4,138,472	+				-3.0
4,138,472	+				-5.1
4,138,472	+				-0.3
4,138,472	+				-2.9
4,138,473	-				-2.4
4,138,473	-				-1.0
4,138,473	-				-2.6
4,138,473	-				-3.7
4,138,473	-				-1.4
4,138,473	-				-2.0
4,138,473	-				-1.3
4,138,473	-				-1.9
4,138,473	-				+1.3
4,138,473	-				-2.0
4,138,474	+				-2.7
4,138,491	+				-3.9
4,138,491	+				-1.1
4,138,492	-				-0.2
4,138,585	+		DDA3937_RS18125	0.13	-0.7
4,138,585	+		DDA3937_RS18125	0.13	-2.1
4,138,586	-		DDA3937_RS18125	0.13	-3.0
4,138,688	+		DDA3937_RS18125	0.21	-2.3
4,138,688	+		DDA3937_RS18125	0.21	-2.8
4,138,688	+		DDA3937_RS18125	0.21	-2.2
4,138,688	+		DDA3937_RS18125	0.21	+0.3
4,138,689	-		DDA3937_RS18125	0.21	-1.2
4,138,842	+		DDA3937_RS18125	0.32	-3.3
4,138,842	+		DDA3937_RS18125	0.32	+0.1
4,138,843	-		DDA3937_RS18125	0.32	-2.9
4,138,843	-		DDA3937_RS18125	0.32	-1.4
4,138,964	-		DDA3937_RS18125	0.40	-0.8
4,138,995	+		DDA3937_RS18125	0.43	-3.4
4,138,996	-		DDA3937_RS18125	0.43	-2.4
4,139,060	-		DDA3937_RS18125	0.47	-4.2
4,139,060	-		DDA3937_RS18125	0.47	-2.1
4,139,172	+		DDA3937_RS18125	0.55	-3.4
4,139,177	+		DDA3937_RS18125	0.56	-3.0
4,139,177	+		DDA3937_RS18125	0.56	-1.4
4,139,178	-				-0.4
4,139,223	+		DDA3937_RS18125	0.59	-1.7
4,139,224	-		DDA3937_RS18125	0.59	-3.0
4,139,226	+		DDA3937_RS18125	0.59	-1.9
4,139,369	+		DDA3937_RS18125	0.69	-2.8
4,139,369	+		DDA3937_RS18125	0.69	-3.4
4,139,369	+		DDA3937_RS18125	0.69	-3.9
4,139,369	+		DDA3937_RS18125	0.69	-1.5
4,139,370	-		DDA3937_RS18125	0.69	-1.1
4,139,370	-		DDA3937_RS18125	0.69	-1.4
4,139,370	-		DDA3937_RS18125	0.69	-4.0
4,139,370	-		DDA3937_RS18125	0.69	-1.6