Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18065

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18060 and DDA3937_RS18065 overlap by 4 nucleotidesDDA3937_RS18065 and DDA3937_RS18070 overlap by 14 nucleotides DDA3937_RS18060: DDA3937_RS18060 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 4,121,631 to 4,122,992 _RS18060 DDA3937_RS18065: DDA3937_RS18065 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 4,122,989 to 4,124,473 _RS18065 DDA3937_RS18070: DDA3937_RS18070 - peptidoglycan glycosyltransferase FtsI, at 4,124,460 to 4,126,223 _RS18070 Position (kb) 4122 4123 4124 4125Strain fitness (log2 ratio) -1 0 1at 4124.462 kb on - strandat 4124.497 kb on - strandat 4124.497 kb on - strandat 4124.497 kb on - strandat 4124.497 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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4,124,462 - -0.9
4,124,497 - -0.1
4,124,497 - +1.1
4,124,497 - +0.8
4,124,497 - -1.5

Or see this region's nucleotide sequence