Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16625

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,784,266	+				+0.2
3,784,431	+		DDA3937_RS16620	0.16	+0.3
3,784,431	+		DDA3937_RS16620	0.16	-3.1
3,784,431	+		DDA3937_RS16620	0.16	-1.0
3,784,431	+		DDA3937_RS16620	0.16	-0.4
3,784,432	-		DDA3937_RS16620	0.16	-0.1
3,784,516	+		DDA3937_RS16620	0.30	+0.9
3,784,641	-		DDA3937_RS16620	0.50	-0.5
3,784,708	+		DDA3937_RS16620	0.61	+0.5
3,784,708	+		DDA3937_RS16620	0.61	-0.7
3,784,945	+				-0.5
3,784,946	-				-1.7
3,784,946	-				+0.9
3,784,946	-				+0.2
3,784,957	+				+4.0
3,784,958	-				-2.0
3,784,989	+				-0.0
3,784,989	+				-1.1
3,784,989	+				-0.3
3,784,990	-				-0.6
3,784,990	-				+0.0
3,784,990	-				+1.0
3,785,005	+				+0.4
3,785,005	+				-1.3
3,785,005	+				-1.8
3,785,036	+				+0.6
3,785,036	+				+0.2
3,785,037	-				-1.8
3,785,040	-				+0.6
3,785,040	-				-2.4
3,785,042	-				-0.5
3,785,042	-				-0.2
3,785,056	+				-1.8
3,785,056	+				-2.7
3,785,056	+				+0.3
3,785,059	+				-0.2
3,785,059	+				-2.4
3,785,122	+				-1.1
3,785,122	+				+0.1
3,785,123	-				+0.0
3,785,124	+				+0.4
3,785,124	+				-0.5
3,785,125	-				-0.2
3,785,125	-				+0.4
3,785,125	-				+0.0
3,785,125	-				+0.8
3,785,125	-				-1.3
3,785,125	-				-0.0
3,785,126	+				+1.7
3,785,126	+				-0.3
3,785,126	+				+0.7
3,785,126	+				-0.8
3,785,126	+				-0.6
3,785,126	+				+0.2
3,785,126	+				-0.8
3,785,126	+				+0.0
3,785,126	+				+0.2
3,785,126	+				+1.4
3,785,126	+				+0.6
3,785,126	+				+0.7
3,785,126	+				-0.5
3,785,126	+				+0.0
3,785,126	+				-1.5
3,785,126	+				-0.3
3,785,126	+				+0.0
3,785,126	+				-0.2
3,785,126	+				-0.3
3,785,126	+				+0.0
3,785,127	-				-0.7
3,785,127	-				-0.1
3,785,127	-				+0.4
3,785,127	-				-0.2
3,785,127	-				+0.1
3,785,127	-				+0.0
3,785,127	-				+0.7
3,785,138	+				-0.2
3,785,138	+				+0.7
3,785,138	+				+0.1
3,785,139	-				-0.1
3,785,302	+		DDA3937_RS16625	0.12	+0.5
3,785,303	-		DDA3937_RS16625	0.12	+1.2
3,785,323	+		DDA3937_RS16625	0.13	+0.2
3,785,351	-		DDA3937_RS16625	0.16	+0.2
3,785,414	-		DDA3937_RS16625	0.21	+0.2
3,785,414	-		DDA3937_RS16625	0.21	+0.1
3,785,475	-		DDA3937_RS16625	0.27	-0.4
3,785,536	+		DDA3937_RS16625	0.32	+0.1
3,785,536	+		DDA3937_RS16625	0.32	-0.6
3,785,537	-		DDA3937_RS16625	0.32	+1.1
3,785,537	-		DDA3937_RS16625	0.32	-0.6
3,785,537	-		DDA3937_RS16625	0.32	+0.1
3,785,577	-		DDA3937_RS16625	0.35	+1.1
3,785,639	+		DDA3937_RS16625	0.41	-0.1
3,785,639	+		DDA3937_RS16625	0.41	-0.5
3,785,640	-		DDA3937_RS16625	0.41	-0.5
3,785,640	-		DDA3937_RS16625	0.41	+0.1
3,785,682	+		DDA3937_RS16625	0.44	-3.4
3,785,751	+		DDA3937_RS16625	0.50	+0.5
3,785,751	+		DDA3937_RS16625	0.50	-0.5
3,785,752	-		DDA3937_RS16625	0.51	-1.0
3,785,755	+		DDA3937_RS16625	0.51	-1.0
3,785,755	+		DDA3937_RS16625	0.51	-0.9
3,785,755	+		DDA3937_RS16625	0.51	+0.2
3,785,755	+		DDA3937_RS16625	0.51	+0.1
3,785,756	-		DDA3937_RS16625	0.51	+0.4
3,785,756	-		DDA3937_RS16625	0.51	+0.4
3,785,777	-		DDA3937_RS16625	0.53	+0.1
3,785,868	+		DDA3937_RS16625	0.61	+2.4
3,785,875	+		DDA3937_RS16625	0.61	-1.8
3,785,875	+		DDA3937_RS16625	0.61	-1.9
3,785,875	+		DDA3937_RS16625	0.61	-1.2
3,785,876	-		DDA3937_RS16625	0.61	-0.0
3,785,876	-		DDA3937_RS16625	0.61	-0.9
3,785,876	-		DDA3937_RS16625	0.61	-0.1
3,785,902	+		DDA3937_RS16625	0.63	-0.9
3,785,903	-		DDA3937_RS16625	0.64	+0.4
3,785,954	-		DDA3937_RS16625	0.68	+0.6
3,786,046	+		DDA3937_RS16625	0.76	+1.0
3,786,121	+				-1.8
3,786,121	+		DDA3937_RS16625	0.82	+0.8
3,786,121	+		DDA3937_RS16625	0.82	-0.4
3,786,122	-		DDA3937_RS16625	0.82	-0.2
3,786,249	+				+0.4
3,786,249	+				+0.2
3,786,250	-				-0.2
3,786,250	-				-0.5
3,786,264	-				-1.1
3,786,311	+				-0.0
3,786,311	+				-1.5
3,786,338	-				-0.9
3,786,353	-				-1.1
3,786,617	-		DDA3937_RS16630	0.40	-0.2
3,786,617	-		DDA3937_RS16630	0.40	-0.9
3,786,618	+		DDA3937_RS16630	0.40	+0.2
3,786,618	+		DDA3937_RS16630	0.40	+0.2
3,786,624	+		DDA3937_RS16630	0.41	+0.5
3,786,624	+		DDA3937_RS16630	0.41	+0.7
3,786,624	+		DDA3937_RS16630	0.41	-0.2
3,786,625	-		DDA3937_RS16630	0.41	+0.1
3,786,625	-		DDA3937_RS16630	0.41	-0.3
3,786,625	-		DDA3937_RS16630	0.41	-0.3
3,786,625	-		DDA3937_RS16630	0.41	+0.1
3,786,666	+		DDA3937_RS16630	0.46	-0.5
3,786,666	+		DDA3937_RS16630	0.46	-1.8
3,786,717	-		DDA3937_RS16630	0.53	+0.9
3,786,717	-		DDA3937_RS16630	0.53	+0.6
3,786,736	-		DDA3937_RS16630	0.55	-0.1
3,786,778	-		DDA3937_RS16630	0.61	+0.1
3,786,778	-		DDA3937_RS16630	0.61	+0.3
3,786,792	+		DDA3937_RS16630	0.62	-0.0
3,786,793	-		DDA3937_RS16630	0.63	-0.2
3,786,870	+		DDA3937_RS16630	0.73	-0.0
3,786,870	+		DDA3937_RS16630	0.73	+0.6
3,786,870	+		DDA3937_RS16630	0.73	-0.5
3,786,871	-		DDA3937_RS16630	0.73	-0.4
3,786,871	-		DDA3937_RS16630	0.73	+0.5
3,786,871	-		DDA3937_RS16630	0.73	-1.6
3,786,871	-		DDA3937_RS16630	0.73	-1.8
3,786,871	-		DDA3937_RS16630	0.73	+0.8
3,786,918	+		DDA3937_RS16630	0.79	+1.6
3,786,919	-		DDA3937_RS16630	0.79	+0.6
3,786,919	-		DDA3937_RS16630	0.79	-1.0
3,786,919	-		DDA3937_RS16630	0.79	-0.6
3,786,919	-		DDA3937_RS16630	0.79	-0.3
3,787,065	-				+0.6
3,787,065	-				+0.7
3,787,065	-				-1.5
3,787,077	+				-0.7
3,787,077	+				-0.4
3,787,077	+				-0.9
3,787,078	-				+1.8
3,787,078	-				+0.4
3,787,078	-				-0.2
3,787,078	-				+0.1
3,787,080	+				-0.9
3,787,080	+				-1.8
3,787,083	+				+0.6
3,787,110	+				+1.1
3,787,111	-				-0.4
3,787,111	-				-0.1
3,787,111	-				+0.3
3,787,114	+				+2.7
3,787,114	+				-0.4
3,787,115	-				-0.5
3,787,115	-				+1.7