Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16565

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,771,158	-				-2.4
3,771,176	+				-1.2
3,771,176	+				-1.1
3,771,177	-				-0.4
3,771,255	+				-1.5
3,771,256	-				+0.5
3,771,367	+				+0.4
3,771,368	-				-2.6
3,771,368	-				+0.5
3,771,439	+		DDA3937_RS16560	0.14	+0.1
3,771,470	+		DDA3937_RS16560	0.20	+1.6
3,771,471	-		DDA3937_RS16560	0.20	-0.6
3,771,502	+		DDA3937_RS16560	0.27	-2.3
3,771,502	+		DDA3937_RS16560	0.27	+0.1
3,771,503	-		DDA3937_RS16560	0.27	-0.5
3,771,503	-		DDA3937_RS16560	0.27	-0.9
3,771,505	+		DDA3937_RS16560	0.28	-2.8
3,771,505	+		DDA3937_RS16560	0.28	-0.3
3,771,506	-		DDA3937_RS16560	0.28	+0.5
3,771,506	-		DDA3937_RS16560	0.28	-1.3
3,771,506	-		DDA3937_RS16560	0.28	-0.3
3,771,506	-		DDA3937_RS16560	0.28	-0.8
3,771,526	-		DDA3937_RS16560	0.32	-1.1
3,771,575	+		DDA3937_RS16560	0.43	-1.8
3,771,575	+		DDA3937_RS16560	0.43	-0.5
3,771,576	-		DDA3937_RS16560	0.43	-1.3
3,771,576	-		DDA3937_RS16560	0.43	+0.5
3,771,585	+		DDA3937_RS16560	0.45	-1.3
3,771,586	-		DDA3937_RS16560	0.46	-1.2
3,771,648	+		DDA3937_RS16560	0.59	-1.1
3,771,648	+		DDA3937_RS16560	0.59	+1.4
3,771,649	-		DDA3937_RS16560	0.59	+0.7
3,771,649	-		DDA3937_RS16560	0.59	-0.9
3,771,805	+				+1.5
3,771,805	+				-1.8
3,771,805	+				+0.1
3,771,805	+				-1.9
3,771,805	+				-0.9
3,771,806	-				-0.2
3,771,806	-				-0.2
3,771,823	-				-0.2
3,771,835	+				-0.5
3,771,835	+				+0.1
3,771,836	-				-0.7
3,771,868	+				-0.1
3,771,891	+				+0.1
3,771,891	+				-1.8
3,771,891	+				-0.3
3,771,891	+				-0.6
3,771,891	+				-1.5
3,771,892	-				+1.5
3,771,908	-				-1.6
3,771,908	-				+0.5
3,771,909	+				-1.1
3,771,909	+				-0.2
3,771,909	+				-1.3
3,771,909	+				-0.0
3,771,909	+				-1.3
3,771,909	+				-1.3
3,771,909	+				-1.8
3,771,910	-				-1.9
3,771,910	-				+2.5
3,771,910	-				+0.2
3,771,910	-				+2.6
3,771,913	+				+0.2
3,771,914	-				-0.2
3,771,914	-				-0.6
3,771,914	-				-0.4
3,771,914	-				-0.9
3,771,935	+				+0.5
3,771,936	-				+2.4
3,771,939	+				+0.1
3,771,939	+				+2.0
3,771,939	+				+0.4
3,771,939	+				-0.5
3,771,940	-				-0.5
3,771,940	-				+1.4
3,771,941	+				-1.1
3,771,942	-				-0.4
3,771,942	-				-0.4
3,771,942	-				-0.4
3,771,946	+				-0.9
3,771,946	+				-0.6
3,771,946	+				-0.1
3,771,946	+				-2.1
3,771,946	+				-0.7
3,771,946	+				-0.3
3,771,946	+				-0.4
3,771,946	+				+0.6
3,771,946	+				-0.3
3,771,946	+				-0.5
3,771,946	+				+0.6
3,771,946	+				-1.5
3,771,946	+				-0.3
3,771,947	-				+0.8
3,771,947	-				+2.6
3,771,947	-				-0.7
3,771,947	-				-1.3
3,771,947	-				+0.1
3,771,947	-				+3.3
3,771,947	-				-0.7
3,771,947	-				-1.2
3,771,947	-				+0.2
3,771,947	-				+0.6
3,771,957	+				+1.1
3,771,957	+				-0.1
3,771,958	-				-1.5
3,771,958	-				+0.6
3,771,962	+				-0.2
3,771,963	-				-0.3
3,771,963	-				-0.2
3,771,979	-				-1.3
3,771,979	-				-0.1
3,772,000	+				-2.9
3,772,000	+				-0.9
3,772,000	+				+1.3
3,772,005	-				-0.2
3,772,022	+				-2.2
3,772,022	+				+1.1
3,772,023	-				-0.8
3,772,023	-				+0.1
3,772,037	-				+0.2
3,772,039	+				-1.1
3,772,039	+				-0.2
3,772,052	-				-0.2
3,772,052	-				+0.2
3,772,052	-				+0.6
3,772,057	+				-0.8
3,772,057	+				-0.9
3,772,063	-				+0.4
3,772,100	+				-1.3
3,772,100	+				+1.4
3,772,100	+				+0.0
3,772,100	+				-0.7
3,772,100	+				+0.1
3,772,100	+				+1.3
3,772,100	+				-0.3
3,772,100	+				+1.1
3,772,100	+				-2.3
3,772,100	+				+1.5
3,772,101	-				-0.3
3,772,101	-				+0.8
3,772,101	-				-0.1
3,772,101	-				-1.3
3,772,101	-				-2.6
3,772,101	-				-0.1
3,772,101	-				-1.9
3,772,101	-				-0.2
3,772,101	-				+0.4
3,772,101	-				+0.1
3,772,101	-				-0.1
3,772,101	-				-0.4
3,772,101	-				-1.0
3,772,101	-				+1.5
3,772,101	-				-2.1
3,772,101	-				-0.7
3,772,101	-				+0.7
3,772,101	-				-0.7
3,772,101	-				-0.5
3,772,101	-				-2.0
3,772,101	-				-0.9
3,772,106	+				-1.2
3,772,106	+				+2.5
3,772,106	+				-0.3
3,772,174	+		DDA3937_RS16565	0.36	-2.2
3,772,174	+		DDA3937_RS16565	0.36	-1.6
3,772,175	-		DDA3937_RS16565	0.37	+0.9
3,772,175	-		DDA3937_RS16565	0.37	-0.9
3,772,293	+				-0.2
3,772,294	-				+1.1
3,772,299	+				-1.5
3,772,300	-				-0.4
3,772,361	+				-0.1
3,772,361	+				-0.4
3,772,361	+				+1.1
3,772,361	+				-0.8
3,772,361	+				-0.7
3,772,362	-				+0.3
3,772,362	-				-1.9
3,772,362	-				+0.3
3,772,363	+				-0.8
3,772,363	+				+0.6
3,772,363	+				+1.6
3,772,364	-				+0.1
3,772,364	-				-0.3
3,772,378	+				+0.6
3,772,378	+				-2.1
3,772,379	-				-0.4
3,772,391	+				+1.4
3,772,392	-				+0.6
3,772,392	-				+0.5
3,772,397	+				-2.1
3,772,397	+				+3.7
3,772,397	+				-0.0
3,772,397	+				-0.4
3,772,397	+				-0.6
3,772,397	+				-0.0
3,772,398	-				-0.4
3,772,398	-				+1.9
3,772,398	-				-0.1
3,772,398	-				-0.0
3,772,451	+				+0.8
3,772,522	+				-1.3
3,772,522	+				+0.1
3,772,522	+				-0.5
3,772,523	-				-0.9
3,772,523	-				-1.6
3,772,535	+				-0.8
3,772,535	+				+0.6
3,772,536	-				-1.9
3,772,536	-				-0.5
3,772,536	-				+0.1
3,772,536	-				-0.2
3,772,539	+				-0.9
3,772,539	+				-0.4
3,772,539	+				+0.7
3,772,539	+				-0.5
3,772,539	+				-1.9
3,772,540	-				-0.4
3,772,540	-				+0.5
3,772,540	-				-2.1
3,772,540	-				-0.3
3,772,603	+				-0.1
3,772,603	+				-0.7
3,772,620	-				+0.2
3,772,643	+				+1.1
3,772,643	+				+0.5
3,772,644	-				-0.2
3,772,644	-				+0.3
3,772,678	+				-0.9
3,772,702	+		DDA3937_RS16570	0.11	-0.0
3,772,702	+		DDA3937_RS16570	0.11	-0.6
3,772,804	-		DDA3937_RS16570	0.18	-0.2
3,772,834	+		DDA3937_RS16570	0.20	-0.4
3,772,835	+		DDA3937_RS16570	0.20	-2.1
3,772,835	+		DDA3937_RS16570	0.20	-0.9
3,772,835	+		DDA3937_RS16570	0.20	-0.2
3,772,835	+		DDA3937_RS16570	0.20	-0.7
3,772,835	+		DDA3937_RS16570	0.20	-0.3
3,772,835	+		DDA3937_RS16570	0.20	+0.6
3,772,836	-		DDA3937_RS16570	0.20	+0.3
3,772,836	-		DDA3937_RS16570	0.20	+0.9
3,772,836	-		DDA3937_RS16570	0.20	+0.1
3,772,836	-		DDA3937_RS16570	0.20	+0.5
3,773,069	+		DDA3937_RS16570	0.36	+0.0
3,773,090	-		DDA3937_RS16570	0.38	-0.2
3,773,297	-		DDA3937_RS16570	0.52	-1.2