Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16110

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,679,849	+				+0.4
3,679,915	+				+1.3
3,679,916	-				-0.1
3,679,916	-				-0.1
3,679,934	-				+0.8
3,679,934	-				-0.6
3,679,934	-				-0.8
3,679,934	-				-0.3
3,679,934	-				+0.3
3,679,945	+				-1.2
3,679,945	+				-0.2
3,679,945	+				+0.6
3,679,945	+				+1.7
3,679,945	+				+0.1
3,679,945	+				+0.0
3,679,945	+				-0.6
3,679,946	-				+0.5
3,679,946	-				-0.3
3,679,949	+				-1.0
3,679,949	+				-0.1
3,679,949	+				+0.1
3,679,950	-				-0.2
3,679,950	-				+0.0
3,679,950	-				+0.0
3,679,950	-				-0.1
3,679,950	-				-0.3
3,679,975	+				-1.1
3,679,975	+				+0.0
3,679,975	+				+1.4
3,679,975	+				-1.7
3,679,976	-				+0.4
3,680,017	+				+0.2
3,680,020	+				-0.6
3,680,020	+				+0.1
3,680,020	+				+0.5
3,680,021	-				-3.7
3,680,024	-				-0.0
3,680,066	-				+0.4
3,680,066	-				-0.4
3,680,070	+				+0.0
3,680,070	+				-2.1
3,680,071	-				-0.5
3,680,073	-				-2.0
3,680,073	-				+0.3
3,680,096	-				-3.5
3,680,153	-		DDA3937_RS16105	0.12	-0.6
3,680,153	-		DDA3937_RS16105	0.12	-1.3
3,680,221	+		DDA3937_RS16105	0.21	+1.8
3,680,221	+		DDA3937_RS16105	0.21	-1.1
3,680,237	-		DDA3937_RS16105	0.23	+0.2
3,680,284	+		DDA3937_RS16105	0.30	-2.7
3,680,284	+		DDA3937_RS16105	0.30	-0.9
3,680,384	+		DDA3937_RS16105	0.43	+0.3
3,680,385	-		DDA3937_RS16105	0.44	+3.1
3,680,524	+		DDA3937_RS16105	0.63	-2.6
3,680,572	+		DDA3937_RS16105	0.69	-1.0
3,680,591	+		DDA3937_RS16105	0.72	-1.1
3,680,591	+		DDA3937_RS16105	0.72	-1.1
3,680,591	+				-0.6
3,680,591	+		DDA3937_RS16105	0.72	-1.8
3,680,592	-		DDA3937_RS16105	0.72	+0.3
3,680,707	+		DDA3937_RS16105	0.88	-3.4
3,680,708	-		DDA3937_RS16105	0.88	+0.1
3,680,709	+		DDA3937_RS16105	0.88	+0.4
3,680,709	+		DDA3937_RS16105	0.88	-0.9
3,680,710	-		DDA3937_RS16105	0.88	-1.0
3,680,710	-		DDA3937_RS16105	0.88	-0.8
3,680,710	-		DDA3937_RS16105	0.88	-0.9
3,680,710	-		DDA3937_RS16105	0.88	-1.2
3,680,746	+				-2.0
3,680,746	+				+0.3
3,680,746	+				-0.3
3,680,786	+				-1.4
3,680,786	+				+0.0
3,680,786	+				+1.7
3,680,786	+				-0.6
3,680,787	-				-0.8
3,680,874	+				-0.8
3,680,874	+				+1.0
3,680,874	+				-1.0
3,680,874	+				-1.3
3,680,875	-				-0.9
3,680,875	-				-0.6
3,680,875	-				-1.8
3,680,875	-				-0.8
3,680,875	-				+0.0
3,680,875	-				-1.0
3,680,879	+				-2.7
3,680,879	+				-1.8
3,680,880	-				-2.1
3,680,924	+		DDA3937_RS16110	0.11	-0.9
3,680,925	-		DDA3937_RS16110	0.11	-3.6
3,680,925	-				+1.0
3,680,932	+		DDA3937_RS16110	0.12	-0.8
3,680,932	+		DDA3937_RS16110	0.12	-2.6
3,680,932	+		DDA3937_RS16110	0.12	-1.2
3,680,932	+		DDA3937_RS16110	0.12	-0.6
3,680,932	+		DDA3937_RS16110	0.12	-1.0
3,680,932	+		DDA3937_RS16110	0.12	-1.3
3,680,932	+				+1.0
3,680,932	+		DDA3937_RS16110	0.12	-1.3
3,680,933	-		DDA3937_RS16110	0.12	-1.4
3,680,933	-		DDA3937_RS16110	0.12	-0.8
3,680,933	-		DDA3937_RS16110	0.12	-2.1
3,680,933	-		DDA3937_RS16110	0.12	-3.1
3,680,933	-		DDA3937_RS16110	0.12	-1.9
3,680,933	-		DDA3937_RS16110	0.12	-0.7
3,680,933	-		DDA3937_RS16110	0.12	+0.0
3,680,933	-				-1.3
3,680,933	-		DDA3937_RS16110	0.12	-3.9
3,680,933	-		DDA3937_RS16110	0.12	-0.7
3,680,933	-		DDA3937_RS16110	0.12	-1.7
3,680,933	-		DDA3937_RS16110	0.12	-2.0
3,680,933	-		DDA3937_RS16110	0.12	-1.2
3,680,933	-		DDA3937_RS16110	0.12	-1.0
3,680,933	-		DDA3937_RS16110	0.12	-0.1
3,680,933	-		DDA3937_RS16110	0.12	-2.6
3,680,933	-		DDA3937_RS16110	0.12	-1.3
3,680,933	-		DDA3937_RS16110	0.12	-0.8
3,680,991	-		DDA3937_RS16110	0.18	-2.8
3,681,034	+		DDA3937_RS16110	0.22	-2.6
3,681,035	-		DDA3937_RS16110	0.23	-2.7
3,681,129	-		DDA3937_RS16110	0.32	-1.7
3,681,129	-		DDA3937_RS16110	0.32	-0.3
3,681,129	-		DDA3937_RS16110	0.32	-1.1
3,681,129	-		DDA3937_RS16110	0.32	-2.3
3,681,280	+		DDA3937_RS16110	0.48	-3.1
3,681,281	-		DDA3937_RS16110	0.48	-2.3
3,681,344	+		DDA3937_RS16110	0.54	-0.4
3,681,344	+		DDA3937_RS16110	0.54	-0.7
3,681,344	+		DDA3937_RS16110	0.54	-0.9
3,681,344	+		DDA3937_RS16110	0.54	-1.8
3,681,344	+		DDA3937_RS16110	0.54	-0.9
3,681,345	-		DDA3937_RS16110	0.54	-0.7
3,681,345	-		DDA3937_RS16110	0.54	-0.6
3,681,345	-		DDA3937_RS16110	0.54	-0.6
3,681,345	-		DDA3937_RS16110	0.54	-0.3
3,681,345	-		DDA3937_RS16110	0.54	-1.0
3,681,345	-		DDA3937_RS16110	0.54	-1.3
3,681,345	-		DDA3937_RS16110	0.54	-0.6
3,681,345	-		DDA3937_RS16110	0.54	-0.3
3,681,345	-		DDA3937_RS16110	0.54	-2.1
3,681,348	+		DDA3937_RS16110	0.55	-0.8
3,681,349	-		DDA3937_RS16110	0.55	-0.7
3,681,349	-		DDA3937_RS16110	0.55	-0.2
3,681,349	-		DDA3937_RS16110	0.55	-1.2
3,681,424	+		DDA3937_RS16110	0.62	-1.7
3,681,500	+		DDA3937_RS16110	0.70	-1.1
3,681,500	+		DDA3937_RS16110	0.70	+0.7
3,681,500	+		DDA3937_RS16110	0.70	-1.1
3,681,500	+		DDA3937_RS16110	0.70	-1.1
3,681,515	+		DDA3937_RS16110	0.72	-2.4
3,681,515	+		DDA3937_RS16110	0.72	-3.1
3,681,529	+		DDA3937_RS16110	0.73	-2.7
3,681,529	+		DDA3937_RS16110	0.73	-0.8
3,681,529	+		DDA3937_RS16110	0.73	-0.1
3,681,530	-		DDA3937_RS16110	0.73	-1.3
3,681,530	-		DDA3937_RS16110	0.73	+0.1
3,681,657	+		DDA3937_RS16110	0.86	-0.9
3,681,684	+		DDA3937_RS16110	0.89	-1.4
3,681,684	+		DDA3937_RS16110	0.89	-1.5
3,681,685	-		DDA3937_RS16110	0.89	-1.7
3,681,732	+				-1.5
3,681,732	+				-2.0
3,681,732	+				-1.5
3,681,733	-				-1.9
3,681,733	-				+1.0
3,681,777	+				-3.2
3,681,777	+				+1.5
3,681,777	+				-1.2
3,681,778	-				-0.6
3,681,778	-				-3.0
3,681,778	-				+1.2
3,681,778	-				-1.3
3,681,778	-				-1.1
3,681,778	-				-1.3
3,681,778	-				-0.6
3,681,791	+				-2.0
3,681,791	+				-1.0
3,681,791	+				-2.1
3,681,791	+				-2.0
3,681,791	+				-2.7
3,681,791	+				+0.4
3,681,791	+				-1.8
3,681,791	+				-1.2
3,681,791	+				-1.2
3,681,791	+				-1.3
3,681,791	+				-1.1
3,681,792	-				-0.8
3,681,792	-				-0.6
3,681,792	-				-1.0
3,681,792	-				-0.6
3,681,792	-				-0.3
3,681,792	-				-1.3
3,681,792	-				+0.4
3,681,792	-				+0.8
3,681,792	-				+0.0
3,681,792	-				-0.7
3,681,792	-				-0.6
3,681,792	-				-1.0
3,681,792	-				-2.3
3,681,792	-				+0.5
3,681,792	-				-0.1
3,681,792	-				+0.1
3,681,792	-				+0.0
3,681,792	-				-2.3
3,681,794	+				-2.8
3,681,794	+				-0.4
3,681,794	+				-2.0
3,681,794	+				-3.2
3,681,794	+				-2.5
3,681,794	+				-0.9
3,681,794	+				-0.7
3,681,794	+				-1.0
3,681,794	+				-2.1
3,681,794	+				-0.6
3,681,794	+				-2.3
3,681,794	+				-2.1
3,681,794	+				-3.0
3,681,794	+				-2.4
3,681,794	+				-1.2
3,681,794	+				-1.8
3,681,794	+				-2.2
3,681,794	+				-1.9
3,681,794	+				-0.8
3,681,795	-				-0.6
3,681,795	-				-2.6
3,681,795	-				-1.8
3,681,795	-				+2.0
3,681,795	-				+0.4
3,681,795	-				+1.0
3,681,795	-				+1.0
3,681,795	-				-0.2
3,681,795	-				-1.6
3,681,795	-				+0.0
3,681,806	+				-1.1
3,681,806	+				-0.3
3,681,806	+				-1.3
3,681,807	-				-0.2
3,681,807	-				-0.5
3,681,807	-				-1.1
3,681,810	-				-1.0
3,681,843	+				+0.0
3,681,843	+				+0.4
3,681,843	+				+0.8
3,681,843	+				-1.4
3,681,843	+				+1.0
3,681,843	+				-2.1
3,681,848	+				-0.4
3,681,848	+				+0.3
3,681,856	+				-0.3
3,681,856	+				+0.2
3,681,856	+				+0.8
3,681,856	+				-2.4
3,681,856	+				-1.0
3,681,856	+				-1.9
3,681,856	+				-0.5
3,681,856	+				-0.4
3,681,866	+				-1.4
3,682,678	-				-1.9
3,682,680	+				-1.0
3,682,680	+				+0.0
3,682,680	+				+0.5
3,682,681	-				+1.0
3,682,681	-				-0.0
3,682,683	+				-1.8
3,682,740	+				-0.6
3,682,740	+				+2.8
3,682,740	+				+0.0
3,682,741	-				-0.6
3,682,741	-				-1.2
3,682,741	-				+1.5
3,682,741	-				+0.7
3,682,741	-				+2.7
3,682,762	-				-0.6
3,682,782	-				-0.2
3,682,782	-				+1.7
3,682,790	+				-0.6
3,682,790	+				-0.6
3,682,790	+				+0.0