Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16030

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,661,970	+		DDA3937_RS16015	0.85	-0.6
3,661,970	+		DDA3937_RS16015	0.85	+0.4
3,661,970	+		DDA3937_RS16015	0.85	-3.0
3,661,971	-		DDA3937_RS16015	0.85	-0.5
3,661,971	-		DDA3937_RS16015	0.85	-0.2
3,662,020	+				-1.8
3,662,021	-				-0.0
3,662,021	-				-0.4
3,662,021	-				-1.6
3,662,037	-				-0.6
3,662,058	-				+0.6
3,662,058	-				+1.3
3,662,166	-				-1.0
3,662,168	-				-0.9
3,662,169	+				-1.1
3,662,169	+				-1.0
3,662,170	-				-0.3
3,662,183	+				+0.4
3,662,198	+				-0.6
3,662,199	-				-0.1
3,662,199	-				+1.6
3,662,199	-				+0.4
3,662,199	-				+0.6
3,662,202	+				-1.2
3,662,203	-				+0.5
3,662,205	+				-0.5
3,662,205	+				-0.3
3,662,241	+				+0.0
3,662,242	-				-0.1
3,662,259	-				+0.8
3,662,277	+				+0.0
3,662,307	+				-0.6
3,662,307	+				-1.8
3,662,307	+				+0.4
3,662,308	-				-0.9
3,662,310	+				-1.1
3,662,311	-				-0.7
3,662,311	-				-0.3
3,662,317	+				+1.1
3,662,317	+				-1.1
3,662,367	+		DDA3937_RS16020	0.28	+0.1
3,662,371	+		DDA3937_RS16020	0.29	-1.3
3,662,371	+		DDA3937_RS16020	0.29	-0.2
3,662,371	+		DDA3937_RS16020	0.29	-1.7
3,662,371	+		DDA3937_RS16020	0.29	-1.6
3,662,371	+		DDA3937_RS16020	0.29	-1.2
3,662,371	+		DDA3937_RS16020	0.29	-1.6
3,662,371	+		DDA3937_RS16020	0.29	-2.6
3,662,372	-		DDA3937_RS16020	0.30	+0.2
3,662,372	-		DDA3937_RS16020	0.30	+1.0
3,662,372	-		DDA3937_RS16020	0.30	-0.4
3,662,372	-		DDA3937_RS16020	0.30	-2.8
3,662,398	-		DDA3937_RS16020	0.41	-0.6
3,662,539	+				+0.1
3,662,540	-				+1.0
3,662,540	-				-0.2
3,662,561	+				-0.5
3,662,561	+				-0.7
3,662,561	+				+0.4
3,662,562	-				-0.3
3,662,562	-				+0.6
3,662,614	-		DDA3937_RS16025	0.17	-0.7
3,662,672	+		DDA3937_RS16025	0.31	-2.0
3,662,672	+		DDA3937_RS16025	0.31	+0.2
3,662,910	+		DDA3937_RS16025	0.89	-2.0
3,662,910	+		DDA3937_RS16025	0.89	+0.2
3,662,910	+		DDA3937_RS16025	0.89	-1.3
3,662,910	+		DDA3937_RS16025	0.89	-0.5
3,662,910	+		DDA3937_RS16025	0.89	-0.2
3,662,911	-		DDA3937_RS16025	0.89	+0.0
3,662,938	-				-0.8
3,662,938	-				+0.1
3,662,981	-				+1.3
3,663,010	+				+0.1
3,663,010	+				+1.6
3,663,010	+				-0.8
3,663,010	+				-2.2
3,663,011	-				-0.3
3,663,011	-				-0.2
3,663,011	-				+0.6
3,663,123	-				+0.6
3,663,145	+				+0.0
3,663,146	-				+0.3
3,663,148	+				+0.0
3,663,148	+		DDA3937_RS16030	0.10	-1.0
3,663,259	+		DDA3937_RS16030	0.15	-0.8
3,663,259	+		DDA3937_RS16030	0.15	-0.2
3,663,259	+		DDA3937_RS16030	0.15	+0.1
3,663,260	-		DDA3937_RS16030	0.15	-0.4
3,663,268	+		DDA3937_RS16030	0.16	-1.3
3,663,268	+		DDA3937_RS16030	0.16	-1.0
3,663,268	+		DDA3937_RS16030	0.16	-0.6
3,663,268	+		DDA3937_RS16030	0.16	+0.1
3,663,269	-		DDA3937_RS16030	0.16	-1.1
3,663,269	-		DDA3937_RS16030	0.16	-0.1
3,663,269	-		DDA3937_RS16030	0.16	-0.2
3,663,269	-		DDA3937_RS16030	0.16	+1.3
3,663,299	-		DDA3937_RS16030	0.17	-0.3
3,663,310	+		DDA3937_RS16030	0.18	+0.2
3,663,310	+		DDA3937_RS16030	0.18	-0.6
3,663,311	-		DDA3937_RS16030	0.18	+0.1
3,663,476	+		DDA3937_RS16030	0.25	+0.7
3,663,477	-		DDA3937_RS16030	0.25	-1.5
3,663,477	-		DDA3937_RS16030	0.25	-1.0
3,663,477	-		DDA3937_RS16030	0.25	-0.3
3,663,480	+		DDA3937_RS16030	0.26	+0.3
3,663,480	+		DDA3937_RS16030	0.26	+0.2
3,663,481	-		DDA3937_RS16030	0.26	+0.5
3,663,554	+		DDA3937_RS16030	0.29	+0.3
3,663,561	+		DDA3937_RS16030	0.29	+0.3
3,663,561	+		DDA3937_RS16030	0.29	-0.7
3,663,561	+		DDA3937_RS16030	0.29	-0.5
3,663,562	-		DDA3937_RS16030	0.29	-0.3
3,663,562	-		DDA3937_RS16030	0.29	-0.5
3,663,707	-		DDA3937_RS16030	0.36	-0.2
3,663,729	+		DDA3937_RS16030	0.37	+0.2
3,663,730	-		DDA3937_RS16030	0.37	-0.1
3,663,819	+		DDA3937_RS16030	0.41	-0.6
3,663,820	-		DDA3937_RS16030	0.41	+1.0
3,663,850	-		DDA3937_RS16030	0.43	+0.0
3,663,868	+		DDA3937_RS16030	0.44	-0.3
3,663,868	+		DDA3937_RS16030	0.44	+0.1
3,663,869	-		DDA3937_RS16030	0.44	+0.5
3,663,886	+		DDA3937_RS16030	0.44	-0.2
3,663,887	-		DDA3937_RS16030	0.44	-0.8
3,663,887	-		DDA3937_RS16030	0.44	+0.1
3,663,887	-		DDA3937_RS16030	0.44	-1.1
3,663,887	-		DDA3937_RS16030	0.44	+0.0
3,663,887	-		DDA3937_RS16030	0.44	-0.1
3,663,925	+		DDA3937_RS16030	0.46	+0.2
3,663,926	-		DDA3937_RS16030	0.46	-0.2
3,664,027	+		DDA3937_RS16030	0.51	+1.4
3,664,028	-		DDA3937_RS16030	0.51	-0.1
3,664,133	-		DDA3937_RS16030	0.56	-0.9
3,664,150	+		DDA3937_RS16030	0.57	+1.3
3,664,150	+		DDA3937_RS16030	0.57	+0.4
3,664,151	-		DDA3937_RS16030	0.57	+0.0
3,664,151	-		DDA3937_RS16030	0.57	+1.6
3,664,151	-		DDA3937_RS16030	0.57	+1.0
3,664,318	-		DDA3937_RS16030	0.65	+1.7
3,664,363	+		DDA3937_RS16030	0.67	-0.2
3,664,364	-		DDA3937_RS16030	0.67	+0.0
3,664,364	-		DDA3937_RS16030	0.67	-0.1
3,664,387	+		DDA3937_RS16030	0.68	-0.7
3,664,387	+		DDA3937_RS16030	0.68	+0.1
3,664,388	-		DDA3937_RS16030	0.68	-0.3
3,664,413	+		DDA3937_RS16030	0.69	-1.0
3,664,424	-		DDA3937_RS16030	0.69	-0.9
3,664,441	+		DDA3937_RS16030	0.70	-2.5
3,664,442	-		DDA3937_RS16030	0.70	-0.1
3,664,482	+		DDA3937_RS16030	0.72	+0.2
3,664,517	-		DDA3937_RS16030	0.74	-0.6
3,664,543	+		DDA3937_RS16030	0.75	+0.7
3,664,544	-				-0.6
3,664,544	-		DDA3937_RS16030	0.75	-2.1
3,664,589	+		DDA3937_RS16030	0.77	-1.6
3,664,590	-		DDA3937_RS16030	0.77	+1.6
3,664,640	+		DDA3937_RS16030	0.80	-0.7
3,664,669	+		DDA3937_RS16030	0.81	-0.6
3,664,669	+		DDA3937_RS16030	0.81	-0.3
3,664,670	-		DDA3937_RS16030	0.81	+1.3
3,664,714	+		DDA3937_RS16030	0.83	+0.0
3,664,714	+		DDA3937_RS16030	0.83	-1.4
3,664,714	+		DDA3937_RS16030	0.83	+0.4
3,664,714	+		DDA3937_RS16030	0.83	-0.3
3,664,717	-		DDA3937_RS16030	0.83	-0.1
3,664,795	+		DDA3937_RS16030	0.87	+0.2
3,664,795	+		DDA3937_RS16030	0.87	+0.6
3,664,796	-		DDA3937_RS16030	0.87	-0.1
3,664,796	-		DDA3937_RS16030	0.87	+0.0
3,664,810	+		DDA3937_RS16030	0.87	+0.2
3,664,810	+		DDA3937_RS16030	0.87	+1.0
3,664,810	+		DDA3937_RS16030	0.87	-1.1
3,664,811	-		DDA3937_RS16030	0.87	-0.0
3,664,811	-		DDA3937_RS16030	0.87	-0.3
3,664,811	-		DDA3937_RS16030	0.87	+2.2
3,664,849	+		DDA3937_RS16030	0.89	-1.0
3,664,849	+		DDA3937_RS16030	0.89	-0.8
3,664,882	+				-0.6
3,664,882	+				+0.6
3,664,883	-				-1.0
3,664,883	-				-0.4
3,664,929	-				-1.8
3,664,929	-				-0.7
3,664,978	+				+0.5
3,664,978	+				-2.2
3,664,978	+				-0.6
3,664,979	-				-0.2
3,665,008	+				+0.2
3,665,008	+				+0.6
3,665,008	+				-0.9
3,665,008	+				-0.6
3,665,009	-				-1.6
3,665,009	-				-1.1
3,665,011	+				+2.0
3,665,011	+				-0.2
3,665,011	+				-0.1
3,665,011	+				-0.4
3,665,012	-				-1.0
3,665,012	-				-0.6
3,665,012	-				-1.0
3,665,077	+				+0.2
3,665,077	+				-0.7
3,665,078	-				+0.0
3,665,078	-				+1.0
3,665,080	+				+0.1
3,665,080	+				-1.6
3,665,081	-				+1.0
3,665,081	-				-0.6
3,665,096	+				-1.0
3,665,096	+				+0.1
3,665,096	+				+0.2
3,665,097	-				+0.4
3,665,097	-				+0.6
3,665,102	+				+0.7
3,665,102	+				+2.0
3,665,110	+				-0.7
3,665,110	+				-1.3
3,665,110	+				-1.0
3,665,110	+				+0.2
3,665,110	+				-0.7
3,665,110	+				-1.3
3,665,110	+				-0.1
3,665,110	+				-0.9
3,665,110	+				-0.2
3,665,111	-				+0.2
3,665,111	-				-0.8
3,665,111	-				-2.0
3,665,111	-				+1.0
3,665,111	-				+0.2
3,665,112	+				-2.4
3,665,112	+				-0.1
3,665,112	+				+1.0
3,665,112	+				-1.6
3,665,112	+				+0.6
3,665,112	+				-0.7
3,665,112	+				-0.7
3,665,112	+				-0.3
3,665,113	-				-0.5
3,665,113	-				-0.4
3,665,113	-				-1.8
3,665,113	-				+1.1
3,665,113	-				+0.3
3,665,113	-				-0.4
3,665,113	-				-1.1
3,665,113	-				+0.4
3,665,113	-				+1.5
3,665,127	+				-0.5
3,665,127	+				-0.8
3,665,128	-				-1.8
3,665,201	+				-1.7
3,665,201	+				-0.5
3,665,202	-				-0.6
3,665,349	+		DDA3937_RS16035	0.22	-1.3
3,665,349	+		DDA3937_RS16035	0.22	+0.2
3,665,449	+		DDA3937_RS16035	0.33	-1.6
3,665,450	-		DDA3937_RS16035	0.33	-2.4
3,665,450	-		DDA3937_RS16035	0.33	-1.1
3,665,450	-		DDA3937_RS16035	0.33	-0.1
3,665,500	+		DDA3937_RS16035	0.38	+2.5
3,665,500	+		DDA3937_RS16035	0.38	-0.4
3,665,500	+		DDA3937_RS16035	0.38	-0.8
3,665,500	+		DDA3937_RS16035	0.38	+1.0
3,665,500	+		DDA3937_RS16035	0.38	+1.8
3,665,501	-		DDA3937_RS16035	0.38	+0.0
3,665,502	+		DDA3937_RS16035	0.38	+1.2
3,665,502	+		DDA3937_RS16035	0.38	+0.2
3,665,503	-		DDA3937_RS16035	0.38	+0.7
3,665,503	-		DDA3937_RS16035	0.38	-0.8
3,665,503	-		DDA3937_RS16035	0.38	-1.5
3,665,503	-		DDA3937_RS16035	0.38	-0.6
3,665,547	-		DDA3937_RS16035	0.43	-1.4
3,665,547	-		DDA3937_RS16035	0.43	-0.8
3,665,561	-		DDA3937_RS16035	0.44	-1.2
3,665,623	+		DDA3937_RS16035	0.51	-0.9
3,665,636	-		DDA3937_RS16035	0.52	+1.4
3,665,648	-		DDA3937_RS16035	0.53	+0.0
3,665,698	-		DDA3937_RS16035	0.59	-0.9
3,665,728	+		DDA3937_RS16035	0.62	+0.7
3,665,728	+		DDA3937_RS16035	0.62	-1.3
3,665,728	+		DDA3937_RS16035	0.62	-0.5
3,665,728	+		DDA3937_RS16035	0.62	-2.1
3,665,728	+		DDA3937_RS16035	0.62	+1.2
3,665,728	+		DDA3937_RS16035	0.62	-2.0
3,665,728	+		DDA3937_RS16035	0.62	-0.4
3,665,729	-		DDA3937_RS16035	0.62	-0.2
3,665,729	-		DDA3937_RS16035	0.62	-2.4
3,665,729	-		DDA3937_RS16035	0.62	-0.1
3,665,729	-				-0.6
3,665,729	-		DDA3937_RS16035	0.62	-1.6
3,665,739	+		DDA3937_RS16035	0.63	-0.2
3,665,739	+		DDA3937_RS16035	0.63	+1.1
3,665,739	+		DDA3937_RS16035	0.63	+0.6
3,665,739	+		DDA3937_RS16035	0.63	-0.1
3,665,739	+		DDA3937_RS16035	0.63	+1.3
3,665,739	+		DDA3937_RS16035	0.63	-1.0
3,665,739	+		DDA3937_RS16035	0.63	-0.1
3,665,739	+		DDA3937_RS16035	0.63	-1.2
3,665,740	-		DDA3937_RS16035	0.63	+0.0
3,665,740	-		DDA3937_RS16035	0.63	+0.0
3,665,743	+		DDA3937_RS16035	0.63	-1.2
3,665,743	+		DDA3937_RS16035	0.63	-0.1
3,665,744	-		DDA3937_RS16035	0.63	+0.4
3,665,744	-		DDA3937_RS16035	0.63	+1.2
3,665,744	-		DDA3937_RS16035	0.63	-0.9
3,665,744	-		DDA3937_RS16035	0.63	-2.0
3,665,756	+		DDA3937_RS16035	0.65	+1.8
3,665,803	+		DDA3937_RS16035	0.69	-0.3
3,665,842	+		DDA3937_RS16035	0.74	+0.4
3,665,843	-		DDA3937_RS16035	0.74	-0.2
3,665,843	-		DDA3937_RS16035	0.74	-0.7
3,665,857	+		DDA3937_RS16035	0.75	-0.1
3,665,857	+		DDA3937_RS16035	0.75	-1.1
3,665,858	-		DDA3937_RS16035	0.75	-0.2
3,665,858	-		DDA3937_RS16035	0.75	-1.3
3,665,858	-		DDA3937_RS16035	0.75	-0.0
3,665,886	-		DDA3937_RS16035	0.78	+1.4
3,665,902	+		DDA3937_RS16035	0.80	-1.2
3,665,902	+		DDA3937_RS16035	0.80	-0.9
3,665,902	+		DDA3937_RS16035	0.80	-0.6
3,665,902	+		DDA3937_RS16035	0.80	+2.0
3,665,902	+		DDA3937_RS16035	0.80	-1.4
3,665,902	+		DDA3937_RS16035	0.80	+0.3
3,665,902	+		DDA3937_RS16035	0.80	+0.0
3,665,903	-		DDA3937_RS16035	0.80	-0.1
3,665,903	-		DDA3937_RS16035	0.80	+1.1
3,665,904	+		DDA3937_RS16035	0.80	-0.8
3,665,904	+		DDA3937_RS16035	0.80	-0.0
3,665,904	+		DDA3937_RS16035	0.80	-0.3
3,665,904	+		DDA3937_RS16035	0.80	+1.4
3,665,905	-		DDA3937_RS16035	0.80	+0.3
3,665,905	-		DDA3937_RS16035	0.80	+1.0
3,666,046	+				+0.3
3,666,046	+				+0.5
3,666,046	+				+2.0
3,666,046	+				+0.5
3,666,046	+				-0.5
3,666,046	+				+0.8
3,666,046	+				+0.2
3,666,047	-				-0.7
3,666,047	-				-1.6
3,666,047	-				+0.9
3,666,047	-				-1.8