Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15700

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,597,305	+				-0.3
3,597,306	-				+1.4
3,597,306	-				+0.3
3,597,306	-				+0.1
3,597,342	+				-0.6
3,597,343	-				-1.3
3,597,343	-				+0.2
3,597,343	-				-1.9
3,597,602	+		DDA3937_RS15695	0.33	-1.0
3,597,602	+		DDA3937_RS15695	0.33	-0.7
3,597,602	+		DDA3937_RS15695	0.33	+1.8
3,597,602	+		DDA3937_RS15695	0.33	-0.4
3,597,602	+		DDA3937_RS15695	0.33	+0.5
3,597,602	+		DDA3937_RS15695	0.33	+1.0
3,597,602	+		DDA3937_RS15695	0.33	-2.0
3,597,602	+		DDA3937_RS15695	0.33	-1.0
3,597,602	+		DDA3937_RS15695	0.33	-0.3
3,597,602	+		DDA3937_RS15695	0.33	-1.0
3,597,602	+		DDA3937_RS15695	0.33	-4.4
3,597,602	+		DDA3937_RS15695	0.33	-3.0
3,597,602	+		DDA3937_RS15695	0.33	+1.0
3,597,602	+		DDA3937_RS15695	0.33	-0.3
3,597,602	+		DDA3937_RS15695	0.33	-0.4
3,597,602	+		DDA3937_RS15695	0.33	-1.2
3,597,602	+		DDA3937_RS15695	0.33	-0.1
3,597,602	+		DDA3937_RS15695	0.33	-0.1
3,597,602	+		DDA3937_RS15695	0.33	+1.0
3,597,602	+				+1.0
3,597,602	+		DDA3937_RS15695	0.33	-0.3
3,597,602	+		DDA3937_RS15695	0.33	-2.3
3,597,603	-		DDA3937_RS15695	0.33	-0.2
3,597,603	-		DDA3937_RS15695	0.33	+0.1
3,597,603	-		DDA3937_RS15695	0.33	+0.3
3,597,603	-		DDA3937_RS15695	0.33	-1.3
3,597,603	-		DDA3937_RS15695	0.33	-0.7
3,597,603	-		DDA3937_RS15695	0.33	+1.0
3,597,603	-		DDA3937_RS15695	0.33	+0.8
3,597,603	-		DDA3937_RS15695	0.33	-0.0
3,597,603	-		DDA3937_RS15695	0.33	-1.1
3,597,603	-		DDA3937_RS15695	0.33	-0.6
3,597,603	-		DDA3937_RS15695	0.33	-0.0
3,597,603	-		DDA3937_RS15695	0.33	-1.6
3,597,603	-		DDA3937_RS15695	0.33	-0.6
3,597,603	-		DDA3937_RS15695	0.33	-0.1
3,597,603	-		DDA3937_RS15695	0.33	+0.1
3,597,603	-		DDA3937_RS15695	0.33	+2.1
3,597,603	-		DDA3937_RS15695	0.33	-0.9
3,597,603	-		DDA3937_RS15695	0.33	+1.1
3,597,604	+		DDA3937_RS15695	0.33	-0.2
3,597,604	+		DDA3937_RS15695	0.33	-0.2
3,597,605	-		DDA3937_RS15695	0.33	-1.3
3,597,658	+				+0.3
3,597,659	-		DDA3937_RS15695	0.40	+1.6
3,597,673	+		DDA3937_RS15695	0.41	+0.6
3,597,750	-		DDA3937_RS15695	0.50	+0.4
3,597,750	-		DDA3937_RS15695	0.50	-0.7
3,597,793	+		DDA3937_RS15695	0.56	-0.6
3,597,835	-		DDA3937_RS15695	0.61	+0.6
3,597,859	+		DDA3937_RS15695	0.63	-0.2
3,597,860	-		DDA3937_RS15695	0.63	-0.7
3,597,860	-		DDA3937_RS15695	0.63	-0.4
3,597,860	-		DDA3937_RS15695	0.63	+0.3
3,597,866	+		DDA3937_RS15695	0.64	+0.2
3,597,867	-		DDA3937_RS15695	0.64	+3.8
3,597,867	-		DDA3937_RS15695	0.64	-0.6
3,597,867	-		DDA3937_RS15695	0.64	+0.8
3,597,867	-		DDA3937_RS15695	0.64	-0.6
3,597,908	+		DDA3937_RS15695	0.69	-0.6
3,597,919	+		DDA3937_RS15695	0.70	+0.6
3,597,920	-		DDA3937_RS15695	0.71	-1.6
3,597,920	-		DDA3937_RS15695	0.71	-1.1
3,597,920	-		DDA3937_RS15695	0.71	-0.6
3,597,942	-		DDA3937_RS15695	0.73	+2.1
3,597,943	+		DDA3937_RS15695	0.73	+0.1
3,597,943	+		DDA3937_RS15695	0.73	-0.1
3,597,943	+		DDA3937_RS15695	0.73	-0.1
3,597,956	-		DDA3937_RS15695	0.75	+0.3
3,597,965	-		DDA3937_RS15695	0.76	-2.2
3,597,988	+		DDA3937_RS15695	0.79	-0.3
3,597,989	-		DDA3937_RS15695	0.79	+1.4
3,597,995	+		DDA3937_RS15695	0.79	+0.3
3,598,025	+		DDA3937_RS15695	0.83	-2.5
3,598,025	+		DDA3937_RS15695	0.83	-1.2
3,598,025	+		DDA3937_RS15695	0.83	+1.0
3,598,026	-		DDA3937_RS15695	0.83	+0.1
3,598,036	+		DDA3937_RS15695	0.84	+1.0
3,598,084	+				-1.0
3,598,084	+				-0.3
3,598,085	-				-0.4
3,598,085	-				-2.8
3,598,085	-				-0.0
3,598,085	-				+0.2
3,598,107	+				+1.2
3,598,107	+				-0.2
3,598,116	-				+0.1
3,598,166	+				-0.4
3,598,207	+				+1.4
3,598,207	+				+1.0
3,598,207	+				-0.0
3,598,246	+				-0.8
3,598,246	+				+0.8
3,598,246	+				-1.6
3,598,247	-				+0.7
3,598,332	-				+0.4
3,598,353	-		DDA3937_RS15700	0.11	-0.0
3,598,354	+		DDA3937_RS15700	0.11	+0.5
3,598,354	+		DDA3937_RS15700	0.11	+0.9
3,598,354	+		DDA3937_RS15700	0.11	+0.3
3,598,354	+		DDA3937_RS15700	0.11	+0.3
3,598,354	+		DDA3937_RS15700	0.11	-1.8
3,598,354	+		DDA3937_RS15700	0.11	+1.4
3,598,355	-		DDA3937_RS15700	0.11	+1.0
3,598,355	-		DDA3937_RS15700	0.11	+0.7
3,598,355	-		DDA3937_RS15700	0.11	-0.9
3,598,355	-		DDA3937_RS15700	0.11	-0.2
3,598,355	-		DDA3937_RS15700	0.11	-0.4
3,598,396	+		DDA3937_RS15700	0.14	+1.0
3,598,396	+		DDA3937_RS15700	0.14	+1.1
3,598,396	+		DDA3937_RS15700	0.14	+0.6
3,598,396	+		DDA3937_RS15700	0.14	-2.3
3,598,396	+		DDA3937_RS15700	0.14	-0.4
3,598,396	+		DDA3937_RS15700	0.14	-0.2
3,598,397	-		DDA3937_RS15700	0.14	-0.8
3,598,397	-		DDA3937_RS15700	0.14	+0.6
3,598,397	-		DDA3937_RS15700	0.14	-0.1
3,598,397	-		DDA3937_RS15700	0.14	-3.3
3,598,397	-		DDA3937_RS15700	0.14	+5.3
3,598,397	-		DDA3937_RS15700	0.14	-0.3
3,598,397	-		DDA3937_RS15700	0.14	+0.6
3,598,397	-		DDA3937_RS15700	0.14	+0.1
3,598,397	-		DDA3937_RS15700	0.14	-1.8
3,598,403	+		DDA3937_RS15700	0.15	+0.2
3,598,404	-		DDA3937_RS15700	0.15	+0.1
3,598,464	+		DDA3937_RS15700	0.19	-0.1
3,598,464	+		DDA3937_RS15700	0.19	+0.6
3,598,464	+		DDA3937_RS15700	0.19	+0.1
3,598,464	+		DDA3937_RS15700	0.19	+1.6
3,598,464	+		DDA3937_RS15700	0.19	+0.4
3,598,464	+		DDA3937_RS15700	0.19	+0.5
3,598,465	-		DDA3937_RS15700	0.19	+1.1
3,598,465	-		DDA3937_RS15700	0.19	+0.6
3,598,465	-		DDA3937_RS15700	0.19	+0.6
3,598,465	-		DDA3937_RS15700	0.19	-0.3
3,598,465	-		DDA3937_RS15700	0.19	+2.3
3,598,547	+		DDA3937_RS15700	0.24	-2.5
3,598,727	+		DDA3937_RS15700	0.36	+0.3
3,598,727	+		DDA3937_RS15700	0.36	+0.7
3,598,727	+				+2.0
3,598,727	+				-0.6
3,598,727	+		DDA3937_RS15700	0.36	+0.4
3,598,728	-		DDA3937_RS15700	0.36	-0.5
3,598,728	-		DDA3937_RS15700	0.36	+0.3
3,598,728	-		DDA3937_RS15700	0.36	+0.6
3,598,728	-		DDA3937_RS15700	0.36	+0.4
3,598,728	-		DDA3937_RS15700	0.36	-0.6
3,598,813	+				-0.6
3,598,904	-		DDA3937_RS15700	0.48	+1.0
3,598,904	-		DDA3937_RS15700	0.48	+1.7
3,598,904	-		DDA3937_RS15700	0.48	-0.8
3,598,904	-		DDA3937_RS15700	0.48	+1.2
3,598,904	-		DDA3937_RS15700	0.48	+2.4
3,598,904	-		DDA3937_RS15700	0.48	+1.2
3,598,919	+		DDA3937_RS15700	0.49	+1.1
3,598,922	-		DDA3937_RS15700	0.49	-1.2
3,598,922	-		DDA3937_RS15700	0.49	+0.6
3,598,962	-		DDA3937_RS15700	0.51	+0.1
3,598,979	-		DDA3937_RS15700	0.53	-0.7
3,599,024	+		DDA3937_RS15700	0.55	-0.6
3,599,024	+		DDA3937_RS15700	0.55	-0.7
3,599,024	+		DDA3937_RS15700	0.55	-0.3
3,599,024	+		DDA3937_RS15700	0.55	+1.0
3,599,024	+		DDA3937_RS15700	0.55	+0.3
3,599,024	+		DDA3937_RS15700	0.55	+0.1
3,599,026	+		DDA3937_RS15700	0.56	+0.7
3,599,026	+		DDA3937_RS15700	0.56	+0.2
3,599,027	-		DDA3937_RS15700	0.56	+0.1
3,599,027	-		DDA3937_RS15700	0.56	-2.0
3,599,027	-		DDA3937_RS15700	0.56	-0.7
3,599,027	-		DDA3937_RS15700	0.56	-0.6
3,599,027	-		DDA3937_RS15700	0.56	-0.0
3,599,027	-		DDA3937_RS15700	0.56	+1.0
3,599,031	-		DDA3937_RS15700	0.56	-1.3
3,599,168	+		DDA3937_RS15700	0.65	-1.7
3,599,216	-		DDA3937_RS15700	0.68	+0.4
3,599,243	+		DDA3937_RS15700	0.70	+0.2
3,599,244	-		DDA3937_RS15700	0.70	-1.1
3,599,244	-		DDA3937_RS15700	0.70	+1.0
3,599,244	-		DDA3937_RS15700	0.70	-0.7
3,599,244	-		DDA3937_RS15700	0.70	+1.0
3,599,266	-		DDA3937_RS15700	0.71	-0.4
3,599,275	+		DDA3937_RS15700	0.72	+1.8
3,599,275	+		DDA3937_RS15700	0.72	+0.4
3,599,275	+		DDA3937_RS15700	0.72	+0.6
3,599,276	-		DDA3937_RS15700	0.72	-0.0
3,599,300	+		DDA3937_RS15700	0.74	+0.3
3,599,300	+		DDA3937_RS15700	0.74	+1.0
3,599,301	-		DDA3937_RS15700	0.74	-0.6
3,599,302	+		DDA3937_RS15700	0.74	+1.0
3,599,303	-		DDA3937_RS15700	0.74	-1.8
3,599,304	+				+1.4
3,599,305	-		DDA3937_RS15700	0.74	-0.6
3,599,305	-		DDA3937_RS15700	0.74	-1.5
3,599,333	-		DDA3937_RS15700	0.76	+2.0
3,599,333	-		DDA3937_RS15700	0.76	+0.3
3,599,334	+		DDA3937_RS15700	0.76	-0.2
3,599,334	+		DDA3937_RS15700	0.76	+0.4
3,599,334	+		DDA3937_RS15700	0.76	-1.2
3,599,335	-		DDA3937_RS15700	0.76	-0.3
3,599,335	-		DDA3937_RS15700	0.76	-0.9
3,599,335	-		DDA3937_RS15700	0.76	+0.6
3,599,361	-		DDA3937_RS15700	0.78	-1.1
3,599,387	+		DDA3937_RS15700	0.79	-1.6
3,599,413	+		DDA3937_RS15700	0.81	+1.0
3,599,414	-		DDA3937_RS15700	0.81	-0.3
3,599,414	-		DDA3937_RS15700	0.81	+0.5
3,599,414	-		DDA3937_RS15700	0.81	-1.3
3,599,414	-		DDA3937_RS15700	0.81	-0.0
3,599,420	+		DDA3937_RS15700	0.82	-1.4
3,599,420	+		DDA3937_RS15700	0.82	+0.5
3,599,421	-		DDA3937_RS15700	0.82	+0.2
3,599,442	+		DDA3937_RS15700	0.83	+0.9
3,599,442	+		DDA3937_RS15700	0.83	+0.8
3,599,442	+		DDA3937_RS15700	0.83	+0.0
3,599,442	+		DDA3937_RS15700	0.83	+0.1
3,599,443	-		DDA3937_RS15700	0.83	+3.0
3,599,443	-		DDA3937_RS15700	0.83	-0.7
3,599,443	-		DDA3937_RS15700	0.83	+0.1
3,599,445	+		DDA3937_RS15700	0.83	+0.4
3,599,445	+		DDA3937_RS15700	0.83	-1.8
3,599,445	+		DDA3937_RS15700	0.83	-1.3
3,599,445	+		DDA3937_RS15700	0.83	-1.8
3,599,445	+		DDA3937_RS15700	0.83	-0.6
3,599,446	-		DDA3937_RS15700	0.83	-0.2
3,599,446	-		DDA3937_RS15700	0.83	-3.5
3,599,446	-		DDA3937_RS15700	0.83	-0.4
3,599,447	+		DDA3937_RS15700	0.83	-1.6
3,599,447	+		DDA3937_RS15700	0.83	+0.8
3,599,447	+		DDA3937_RS15700	0.83	-0.2
3,599,448	-		DDA3937_RS15700	0.83	-1.0
3,599,482	+		DDA3937_RS15700	0.86	-0.0
3,599,515	+		DDA3937_RS15700	0.88	+0.5
3,599,515	+		DDA3937_RS15700	0.88	-0.0
3,599,547	-		DDA3937_RS15700	0.90	+2.2
3,599,661	+				-1.0
3,599,667	+				-0.4
3,599,667	+				+0.9
3,599,667	+				-0.5
3,599,668	-				+1.6
3,599,668	-				-0.4
3,599,668	-				-0.1
3,599,670	+				+1.0
3,599,670	+				-0.7
3,599,670	+				-1.0
3,599,670	+				+1.8
3,599,671	-				+0.1
3,599,671	-				+0.2
3,599,671	-				+0.2
3,599,674	-				+0.7
3,599,676	+				-0.3
3,599,685	+				-1.0
3,599,685	+				+2.5
3,599,688	-				+0.3
3,599,702	+				-1.8
3,599,774	+				+0.7
3,599,774	+				-0.0
3,599,774	+				-0.4
3,599,774	+				+0.4
3,599,774	+				+0.3
3,599,774	+				-0.5
3,599,775	-				+2.6
3,599,775	-				+3.1
3,599,775	-				+4.1
3,599,775	-				+2.1
3,599,775	-				+6.3
3,599,820	+				-0.1
3,599,820	+				+1.1
3,599,821	-				+1.9
3,599,821	-				-0.1
3,599,843	-				+0.8
3,599,843	-				-1.6
3,599,843	-				+0.4
3,599,843	-				+1.3
3,599,873	+				+0.8
3,599,887	+				-0.8
3,599,887	+				-1.2
3,599,887	+				-0.3
3,599,887	+				+0.1
3,599,899	+				-1.2
3,599,900	-				+0.6
3,599,900	-				+1.0
3,599,919	+				+0.4
3,599,920	-				+0.1
3,599,924	-				-0.8
3,599,924	-				-0.5
3,599,927	-				+0.8
3,599,941	+				-0.6
3,599,957	-				-0.6
3,599,959	+				-0.6
3,599,959	+				+1.0
3,599,966	-				+0.3
3,599,966	-				-0.2
3,599,969	+				-0.2
3,599,977	+				-0.6
3,599,977	+				-1.2
3,599,977	+				-1.0
3,599,978	-				+0.3
3,599,978	-				-0.0
3,599,978	-				-0.2
3,599,987	+				+0.5
3,599,990	+				-0.6
3,599,998	+				-0.0
3,600,062	+				+1.3
3,600,100	-				+1.5
3,600,197	+				-0.6
3,600,198	-				+0.1
3,600,233	-				+0.7
3,600,233	-				-0.0
3,600,273	+				-0.4
3,600,274	-				+1.8
3,600,274	-				+0.4
3,600,340	+				+0.7
3,600,345	+				+0.9
3,600,346	-				+1.8
3,600,461	+				+0.7
3,600,461	+				+0.2
3,600,477	+				+0.6
3,600,477	+				+0.0
3,600,477	+				-0.0
3,600,478	-				-0.2
3,600,478	-				-0.1
3,600,478	-				-0.2
3,600,478	-				-0.8
3,600,478	-				+0.7
3,600,478	-				-2.2
3,600,556	+		DDA3937_RS15705	0.10	+1.9
3,600,556	+		DDA3937_RS15705	0.10	+4.4
3,600,556	+		DDA3937_RS15705	0.10	+4.5
3,600,556	+		DDA3937_RS15705	0.10	+4.2
3,600,556	+		DDA3937_RS15705	0.10	+4.5
3,600,557	-		DDA3937_RS15705	0.10	+3.0
3,600,557	-		DDA3937_RS15705	0.10	+4.2
3,600,557	-		DDA3937_RS15705	0.10	+3.5
3,600,586	+		DDA3937_RS15705	0.14	+4.2
3,600,616	+		DDA3937_RS15705	0.18	+4.5
3,600,616	+		DDA3937_RS15705	0.18	+3.7
3,600,616	+		DDA3937_RS15705	0.18	+4.4
3,600,617	-		DDA3937_RS15705	0.18	+4.0
3,600,617	-		DDA3937_RS15705	0.18	+3.4
3,600,617	-		DDA3937_RS15705	0.18	+3.5
3,600,617	-		DDA3937_RS15705	0.18	+2.7
3,600,621	+		DDA3937_RS15705	0.18	+5.1
3,600,621	+		DDA3937_RS15705	0.18	+4.2
3,600,621	+		DDA3937_RS15705	0.18	+3.7
3,600,622	-		DDA3937_RS15705	0.18	+3.9
3,600,685	+		DDA3937_RS15705	0.26	+2.9
3,600,685	+		DDA3937_RS15705	0.26	+4.9
3,600,686	-		DDA3937_RS15705	0.27	+2.8