Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15690

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,594,166	+		DDA3937_RS15680	0.24	+0.1
3,594,166	+		DDA3937_RS15680	0.24	-1.8
3,594,166	+		DDA3937_RS15680	0.24	-0.4
3,594,166	+		DDA3937_RS15680	0.24	-0.5
3,594,167	-		DDA3937_RS15680	0.25	+2.3
3,594,167	-		DDA3937_RS15680	0.25	+0.1
3,594,167	-		DDA3937_RS15680	0.25	+0.5
3,594,200	-		DDA3937_RS15680	0.34	-1.0
3,594,242	+		DDA3937_RS15680	0.46	+0.3
3,594,243	-		DDA3937_RS15680	0.47	+0.2
3,594,243	-		DDA3937_RS15680	0.47	+0.2
3,594,249	-		DDA3937_RS15680	0.49	+0.8
3,594,249	-		DDA3937_RS15680	0.49	-0.6
3,594,249	-		DDA3937_RS15680	0.49	+0.4
3,594,381	-		DDA3937_RS15680	0.87	+0.6
3,594,415	+				-0.3
3,594,416	-				+0.4
3,594,417	+				+2.2
3,594,418	-				-1.3
3,594,424	+				-0.0
3,594,424	+				+2.1
3,594,425	-				-0.4
3,594,425	-				+0.8
3,594,425	-				-1.5
3,594,425	-				-0.3
3,594,477	+				+1.3
3,594,478	-				-1.3
3,594,520	+				-0.5
3,594,520	+				+0.2
3,594,521	-				+1.3
3,594,521	-				-0.6
3,594,521	-				-0.5
3,594,521	-				+1.0
3,594,571	+				+0.4
3,594,571	+				-0.3
3,594,571	+				+0.1
3,594,571	+				-0.8
3,594,571	+				-0.4
3,594,571	+				-0.4
3,594,571	+				-1.2
3,594,571	+				+0.1
3,594,571	+				-1.9
3,594,571	+				-1.0
3,594,571	+				+0.3
3,594,571	+				+1.0
3,594,571	+				-0.9
3,594,571	+				-1.1
3,594,571	+				+1.9
3,594,571	+				-0.3
3,594,571	+				+0.1
3,594,572	-				+0.9
3,594,572	-				+0.1
3,594,572	-				+0.1
3,594,572	-				+1.0
3,594,572	-				+2.6
3,594,572	-				+1.9
3,594,572	-				+0.2
3,594,575	+				+1.0
3,594,575	+				+0.3
3,594,575	+				-2.4
3,594,576	-				+0.7
3,594,576	-				-0.1
3,594,576	-				+1.9
3,594,576	-				+0.3
3,594,576	-				+0.7
3,594,576	-				-0.5
3,594,693	+				+0.4
3,594,694	-				+0.9
3,594,792	+				-0.3
3,594,792	+				+0.5
3,594,793	-				+1.0
3,594,793	-				-0.2
3,594,852	+				-1.6
3,594,856	-				+4.1
3,594,858	+				-1.0
3,594,858	+				-0.1
3,594,858	+				-0.5
3,594,858	+				-1.3
3,594,858	+				+0.5
3,594,859	-				+0.7
3,594,859	-				+0.9
3,594,859	-				+1.0
3,594,859	-				-1.3
3,594,859	-				+0.3
3,594,871	-				+0.8
3,594,871	-				+0.6
3,594,879	+				-0.6
3,594,879	+				-2.2
3,594,879	+				-0.0
3,594,879	+				-0.4
3,594,880	-				+1.2
3,594,880	-				+1.6
3,594,880	-				+1.0
3,594,880	-				-1.6
3,594,882	+				+0.7
3,594,882	+				-2.1
3,594,883	-				-0.4
3,594,904	+				-0.6
3,594,904	+				+1.2
3,594,904	+				-0.2
3,594,904	+				-1.3
3,594,904	+				-1.0
3,594,904	+				-0.5
3,594,905	-				+2.3
3,594,905	-				-0.0
3,594,906	+				-0.4
3,594,906	+				-0.3
3,594,906	+				+0.1
3,594,906	+				-0.2
3,594,907	-				+0.6
3,594,918	+				-1.3
3,594,919	-				-0.4
3,594,919	-				+0.3
3,594,968	+				-0.5
3,594,968	+				-0.2
3,594,968	+				-0.4
3,594,968	+				-2.0
3,594,969	-				+1.1
3,594,969	-				-1.6
3,595,025	+				-0.2
3,595,026	-				-0.6
3,595,026	-				+5.6
3,595,026	-				-0.0
3,595,071	-				-0.8
3,595,071	-				+0.4
3,595,094	+				+0.4
3,595,095	-				-0.0
3,595,133	-				+1.4
3,595,155	+				-0.4
3,595,155	+				-1.6
3,595,156	-				+0.1
3,595,156	-				+1.0
3,595,156	-				-0.0
3,595,190	-				+2.5
3,595,545	+		DDA3937_RS15690	0.18	-1.3
3,595,546	-		DDA3937_RS15690	0.18	+0.6
3,595,548	+		DDA3937_RS15690	0.18	-1.0
3,595,548	+		DDA3937_RS15690	0.18	+1.0
3,595,548	+		DDA3937_RS15690	0.18	+2.3
3,595,549	-		DDA3937_RS15690	0.18	+0.1
3,595,549	-		DDA3937_RS15690	0.18	+0.3
3,595,549	-		DDA3937_RS15690	0.18	-1.2
3,595,549	-		DDA3937_RS15690	0.18	+0.8
3,595,549	-		DDA3937_RS15690	0.18	+0.5
3,595,549	-		DDA3937_RS15690	0.18	+0.9
3,595,565	-		DDA3937_RS15690	0.19	+1.0
3,595,565	-		DDA3937_RS15690	0.19	+0.2
3,595,680	-		DDA3937_RS15690	0.24	-0.7
3,595,680	-		DDA3937_RS15690	0.24	+0.2
3,595,713	+		DDA3937_RS15690	0.26	-0.0
3,595,716	+		DDA3937_RS15690	0.26	+0.7
3,595,716	+		DDA3937_RS15690	0.26	-0.0
3,595,717	-		DDA3937_RS15690	0.26	-0.0
3,595,757	-		DDA3937_RS15690	0.28	-0.0
3,595,785	+		DDA3937_RS15690	0.29	-1.3
3,595,786	-		DDA3937_RS15690	0.29	+0.3
3,595,841	+		DDA3937_RS15690	0.32	-0.2
3,595,851	-		DDA3937_RS15690	0.32	+0.2
3,595,851	-		DDA3937_RS15690	0.32	-0.3
3,595,853	+		DDA3937_RS15690	0.32	-0.6
3,595,853	+		DDA3937_RS15690	0.32	+1.0
3,595,853	+		DDA3937_RS15690	0.32	+0.4
3,595,853	+		DDA3937_RS15690	0.32	-0.7
3,595,854	-		DDA3937_RS15690	0.32	-1.3
3,595,854	-		DDA3937_RS15690	0.32	-0.5
3,595,896	+		DDA3937_RS15690	0.34	-1.6
3,596,254	-		DDA3937_RS15690	0.50	-1.0
3,596,254	-		DDA3937_RS15690	0.50	+1.9
3,596,336	+		DDA3937_RS15690	0.54	+0.8
3,596,336	+				+2.3
3,596,337	-		DDA3937_RS15690	0.54	-1.0
3,596,408	+		DDA3937_RS15690	0.58	-0.6
3,596,408	+		DDA3937_RS15690	0.58	+0.8
3,596,408	+		DDA3937_RS15690	0.58	-1.6
3,596,408	+		DDA3937_RS15690	0.58	-2.8
3,596,409	-		DDA3937_RS15690	0.58	+0.4
3,596,409	-		DDA3937_RS15690	0.58	-2.7
3,596,409	-		DDA3937_RS15690	0.58	-0.0
3,596,410	+		DDA3937_RS15690	0.58	-1.0
3,596,410	+		DDA3937_RS15690	0.58	-0.4
3,596,410	+		DDA3937_RS15690	0.58	-1.4
3,596,410	+		DDA3937_RS15690	0.58	-1.3
3,596,410	+		DDA3937_RS15690	0.58	+0.5
3,596,411	-		DDA3937_RS15690	0.58	-1.0
3,596,411	-		DDA3937_RS15690	0.58	-1.1
3,596,411	-		DDA3937_RS15690	0.58	+1.7
3,596,411	-				-1.0
3,596,411	-				-0.6
3,596,432	+		DDA3937_RS15690	0.59	-0.3
3,596,433	-		DDA3937_RS15690	0.59	-0.4
3,596,459	-		DDA3937_RS15690	0.60	+0.3
3,596,459	-		DDA3937_RS15690	0.60	+0.1
3,596,459	-		DDA3937_RS15690	0.60	-0.6
3,596,567	+				-0.6
3,596,623	-		DDA3937_RS15690	0.67	-0.1
3,596,623	-		DDA3937_RS15690	0.67	-0.5
3,596,685	+		DDA3937_RS15690	0.70	-1.8
3,596,688	+		DDA3937_RS15690	0.70	-1.3
3,596,689	-		DDA3937_RS15690	0.70	-0.6
3,596,689	-		DDA3937_RS15690	0.70	-0.4
3,596,689	-		DDA3937_RS15690	0.70	-2.0
3,596,779	+		DDA3937_RS15690	0.74	-0.2
3,596,779	+		DDA3937_RS15690	0.74	-1.3
3,596,780	-		DDA3937_RS15690	0.75	-0.4
3,596,816	+		DDA3937_RS15690	0.76	-0.3
3,596,816	+		DDA3937_RS15690	0.76	-0.5
3,596,817	-		DDA3937_RS15690	0.76	+0.3
3,596,817	-		DDA3937_RS15690	0.76	-0.1
3,596,863	+		DDA3937_RS15690	0.78	+1.1
3,596,929	+		DDA3937_RS15690	0.81	+2.2
3,596,930	-		DDA3937_RS15690	0.81	-0.7
3,596,930	-		DDA3937_RS15690	0.81	+0.1
3,596,933	+		DDA3937_RS15690	0.82	-0.3
3,596,933	+		DDA3937_RS15690	0.82	-0.5
3,596,933	+		DDA3937_RS15690	0.82	+1.0
3,596,933	+		DDA3937_RS15690	0.82	-0.9
3,596,934	-		DDA3937_RS15690	0.82	-0.7
3,596,934	-		DDA3937_RS15690	0.82	-0.0
3,596,934	-		DDA3937_RS15690	0.82	+0.3
3,596,934	-		DDA3937_RS15690	0.82	+0.5
3,597,007	+		DDA3937_RS15690	0.85	+1.5
3,597,007	+		DDA3937_RS15690	0.85	+0.3
3,597,008	-		DDA3937_RS15690	0.85	-0.3
3,597,009	+		DDA3937_RS15690	0.85	-0.1
3,597,010	-		DDA3937_RS15690	0.85	-2.6
3,597,010	-		DDA3937_RS15690	0.85	-1.7
3,597,157	-				+0.6
3,597,157	-				-0.3
3,597,175	+				-0.7
3,597,175	+				-0.3
3,597,175	+				-0.5
3,597,176	-				+0.4
3,597,176	-				-0.7
3,597,176	-				-0.8
3,597,176	-				+1.0
3,597,305	+				-0.3
3,597,306	-				+1.4
3,597,306	-				+0.3
3,597,306	-				+0.1
3,597,342	+				-0.6
3,597,343	-				-1.3
3,597,343	-				+0.2
3,597,343	-				-1.9
3,597,602	+		DDA3937_RS15695	0.33	-1.0
3,597,602	+		DDA3937_RS15695	0.33	-0.7
3,597,602	+		DDA3937_RS15695	0.33	+1.8
3,597,602	+		DDA3937_RS15695	0.33	-0.4
3,597,602	+		DDA3937_RS15695	0.33	+0.5
3,597,602	+		DDA3937_RS15695	0.33	+1.0
3,597,602	+		DDA3937_RS15695	0.33	-2.0
3,597,602	+		DDA3937_RS15695	0.33	-1.0
3,597,602	+		DDA3937_RS15695	0.33	-0.3
3,597,602	+		DDA3937_RS15695	0.33	-1.0
3,597,602	+		DDA3937_RS15695	0.33	-4.4
3,597,602	+		DDA3937_RS15695	0.33	-3.0
3,597,602	+		DDA3937_RS15695	0.33	+1.0
3,597,602	+		DDA3937_RS15695	0.33	-0.3
3,597,602	+		DDA3937_RS15695	0.33	-0.4
3,597,602	+		DDA3937_RS15695	0.33	-1.2
3,597,602	+		DDA3937_RS15695	0.33	-0.1
3,597,602	+		DDA3937_RS15695	0.33	-0.1
3,597,602	+		DDA3937_RS15695	0.33	+1.0
3,597,602	+				+1.0
3,597,602	+		DDA3937_RS15695	0.33	-0.3
3,597,602	+		DDA3937_RS15695	0.33	-2.3
3,597,603	-		DDA3937_RS15695	0.33	-0.2
3,597,603	-		DDA3937_RS15695	0.33	+0.1
3,597,603	-		DDA3937_RS15695	0.33	+0.3
3,597,603	-		DDA3937_RS15695	0.33	-1.3
3,597,603	-		DDA3937_RS15695	0.33	-0.7
3,597,603	-		DDA3937_RS15695	0.33	+1.0
3,597,603	-		DDA3937_RS15695	0.33	+0.8
3,597,603	-		DDA3937_RS15695	0.33	-0.0
3,597,603	-		DDA3937_RS15695	0.33	-1.1
3,597,603	-		DDA3937_RS15695	0.33	-0.6
3,597,603	-		DDA3937_RS15695	0.33	-0.0
3,597,603	-		DDA3937_RS15695	0.33	-1.6
3,597,603	-		DDA3937_RS15695	0.33	-0.6
3,597,603	-		DDA3937_RS15695	0.33	-0.1
3,597,603	-		DDA3937_RS15695	0.33	+0.1
3,597,603	-		DDA3937_RS15695	0.33	+2.1
3,597,603	-		DDA3937_RS15695	0.33	-0.9
3,597,603	-		DDA3937_RS15695	0.33	+1.1
3,597,604	+		DDA3937_RS15695	0.33	-0.2
3,597,604	+		DDA3937_RS15695	0.33	-0.2
3,597,605	-		DDA3937_RS15695	0.33	-1.3
3,597,658	+				+0.3
3,597,659	-		DDA3937_RS15695	0.40	+1.6
3,597,673	+		DDA3937_RS15695	0.41	+0.6
3,597,750	-		DDA3937_RS15695	0.50	+0.4
3,597,750	-		DDA3937_RS15695	0.50	-0.7
3,597,793	+		DDA3937_RS15695	0.56	-0.6
3,597,835	-		DDA3937_RS15695	0.61	+0.6
3,597,859	+		DDA3937_RS15695	0.63	-0.2
3,597,860	-		DDA3937_RS15695	0.63	-0.7
3,597,860	-		DDA3937_RS15695	0.63	-0.4
3,597,860	-		DDA3937_RS15695	0.63	+0.3
3,597,866	+		DDA3937_RS15695	0.64	+0.2
3,597,867	-		DDA3937_RS15695	0.64	+3.8
3,597,867	-		DDA3937_RS15695	0.64	-0.6
3,597,867	-		DDA3937_RS15695	0.64	+0.8
3,597,867	-		DDA3937_RS15695	0.64	-0.6
3,597,908	+		DDA3937_RS15695	0.69	-0.6
3,597,919	+		DDA3937_RS15695	0.70	+0.6
3,597,920	-		DDA3937_RS15695	0.71	-1.6
3,597,920	-		DDA3937_RS15695	0.71	-1.1
3,597,920	-		DDA3937_RS15695	0.71	-0.6
3,597,942	-		DDA3937_RS15695	0.73	+2.1
3,597,943	+		DDA3937_RS15695	0.73	+0.1
3,597,943	+		DDA3937_RS15695	0.73	-0.1
3,597,943	+		DDA3937_RS15695	0.73	-0.1
3,597,956	-		DDA3937_RS15695	0.75	+0.3
3,597,965	-		DDA3937_RS15695	0.76	-2.2
3,597,988	+		DDA3937_RS15695	0.79	-0.3
3,597,989	-		DDA3937_RS15695	0.79	+1.4
3,597,995	+		DDA3937_RS15695	0.79	+0.3
3,598,025	+		DDA3937_RS15695	0.83	-2.5
3,598,025	+		DDA3937_RS15695	0.83	-1.2
3,598,025	+		DDA3937_RS15695	0.83	+1.0
3,598,026	-		DDA3937_RS15695	0.83	+0.1
3,598,036	+		DDA3937_RS15695	0.84	+1.0
3,598,084	+				-1.0
3,598,084	+				-0.3
3,598,085	-				-0.4
3,598,085	-				-2.8
3,598,085	-				-0.0
3,598,085	-				+0.2
3,598,107	+				+1.2
3,598,107	+				-0.2
3,598,116	-				+0.1
3,598,166	+				-0.4
3,598,207	+				+1.4
3,598,207	+				+1.0
3,598,207	+				-0.0
3,598,246	+				-0.8
3,598,246	+				+0.8
3,598,246	+				-1.6
3,598,247	-				+0.7
3,598,332	-				+0.4