Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS15450 and DDA3937_RS15455 are separated by 10 nucleotides DDA3937_RS15455 and DDA3937_RS15460 are separated by 13 nucleotides DDA3937_RS15460 and DDA3937_RS15465 are separated by 152 nucleotides
DDA3937_RS15450: DDA3937_RS15450 - outer membrane protein assembly factor BamB, at 3,542,083 to 3,543,264
_RS15450
DDA3937_RS15455: DDA3937_RS15455 - YfgM family protein, at 3,543,275 to 3,543,895
_RS15455
DDA3937_RS15460: DDA3937_RS15460 - histidine--tRNA ligase, at 3,543,909 to 3,545,183
_RS15460
DDA3937_RS15465: DDA3937_RS15465 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 3,545,336 to 3,546,457
_RS15465
Position (kb) 3543
3544
3545
3546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3543.048 kb on - strand, within DDA3937_RS15450 at 3543.087 kb on - strand, within DDA3937_RS15450 at 3543.253 kb on - strand at 3543.277 kb on - strand at 3543.277 kb on - strand at 3543.277 kb on - strand at 3543.353 kb on - strand, within DDA3937_RS15455 at 3543.353 kb on - strand, within DDA3937_RS15455 at 3543.353 kb on - strand, within DDA3937_RS15455 at 3543.355 kb on - strand, within DDA3937_RS15455 at 3543.355 kb on - strand, within DDA3937_RS15455 at 3543.494 kb on + strand, within DDA3937_RS15455 at 3543.886 kb on - strand at 3543.886 kb on - strand at 3545.242 kb on - strand at 3545.242 kb on - strand at 3545.242 kb on - strand at 3545.242 kb on - strand at 3545.242 kb on - strand at 3545.341 kb on + strand at 3545.342 kb on - strand at 3545.351 kb on - strand at 3545.351 kb on - strand at 3545.351 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 3,543,048 - DDA3937_RS15450 0.82 -1.8 3,543,087 - DDA3937_RS15450 0.85 -3.0 3,543,253 - -2.0 3,543,277 - -0.6 3,543,277 - +0.7 3,543,277 - -0.3 3,543,353 - DDA3937_RS15455 0.13 +0.6 3,543,353 - DDA3937_RS15455 0.13 +1.0 3,543,353 - DDA3937_RS15455 0.13 -0.9 3,543,355 - DDA3937_RS15455 0.13 +0.2 3,543,355 - DDA3937_RS15455 0.13 +4.5 3,543,494 + DDA3937_RS15455 0.35 -2.7 3,543,886 - -0.4 3,543,886 - +0.2 3,545,242 - -0.4 3,545,242 - +0.9 3,545,242 - -1.2 3,545,242 - +0.4 3,545,242 - -0.9 3,545,341 + -1.0 3,545,342 - -0.9 3,545,351 - -2.1 3,545,351 - -0.2 3,545,351 - +0.4
Or see this region's nucleotide sequence