Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14440

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,308,079	-		DDA3937_RS14435	0.46	-2.5
3,308,097	+		DDA3937_RS14435	0.47	-2.4
3,308,120	+		DDA3937_RS14435	0.49	-1.8
3,308,120	+		DDA3937_RS14435	0.49	-1.8
3,308,120	+		DDA3937_RS14435	0.49	-0.6
3,308,121	-		DDA3937_RS14435	0.49	-3.7
3,308,121	-		DDA3937_RS14435	0.49	-2.8
3,308,121	-		DDA3937_RS14435	0.49	-1.2
3,308,121	-		DDA3937_RS14435	0.49	-0.8
3,308,121	-		DDA3937_RS14435	0.49	-1.1
3,308,126	+		DDA3937_RS14435	0.49	-1.2
3,308,126	+		DDA3937_RS14435	0.49	-1.4
3,308,126	+		DDA3937_RS14435	0.49	-1.1
3,308,126	+		DDA3937_RS14435	0.49	-2.3
3,308,126	+		DDA3937_RS14435	0.49	-2.2
3,308,127	-		DDA3937_RS14435	0.49	-2.4
3,308,127	-		DDA3937_RS14435	0.49	-1.1
3,308,127	-		DDA3937_RS14435	0.49	+1.6
3,308,127	-		DDA3937_RS14435	0.49	-2.4
3,308,127	-		DDA3937_RS14435	0.49	-2.8
3,308,127	-		DDA3937_RS14435	0.49	-2.0
3,308,201	+		DDA3937_RS14435	0.54	-3.3
3,308,201	+		DDA3937_RS14435	0.54	-2.2
3,308,201	+		DDA3937_RS14435	0.54	-2.2
3,308,201	+		DDA3937_RS14435	0.54	-1.5
3,308,201	+		DDA3937_RS14435	0.54	-0.9
3,308,201	+		DDA3937_RS14435	0.54	-1.1
3,308,201	+		DDA3937_RS14435	0.54	-1.7
3,308,201	+		DDA3937_RS14435	0.54	-1.9
3,308,201	+		DDA3937_RS14435	0.54	-1.4
3,308,201	+		DDA3937_RS14435	0.54	-1.9
3,308,201	+		DDA3937_RS14435	0.54	-2.3
3,308,201	+		DDA3937_RS14435	0.54	-0.9
3,308,201	+		DDA3937_RS14435	0.54	-2.6
3,308,201	+		DDA3937_RS14435	0.54	-1.6
3,308,201	+		DDA3937_RS14435	0.54	-2.4
3,308,201	+		DDA3937_RS14435	0.54	-1.8
3,308,201	+		DDA3937_RS14435	0.54	-2.0
3,308,202	-		DDA3937_RS14435	0.54	-1.4
3,308,202	-		DDA3937_RS14435	0.54	-1.3
3,308,202	-		DDA3937_RS14435	0.54	-1.3
3,308,202	-		DDA3937_RS14435	0.54	-1.2
3,308,202	-		DDA3937_RS14435	0.54	-2.8
3,308,202	-		DDA3937_RS14435	0.54	-2.8
3,308,202	-		DDA3937_RS14435	0.54	-1.6
3,308,202	-		DDA3937_RS14435	0.54	-1.5
3,308,202	-		DDA3937_RS14435	0.54	-1.0
3,308,202	-		DDA3937_RS14435	0.54	+1.4
3,308,202	-		DDA3937_RS14435	0.54	-1.3
3,308,202	-		DDA3937_RS14435	0.54	-2.5
3,308,202	-		DDA3937_RS14435	0.54	-1.3
3,308,202	-		DDA3937_RS14435	0.54	-0.9
3,308,250	+		DDA3937_RS14435	0.57	-1.9
3,308,282	+		DDA3937_RS14435	0.60	-2.1
3,308,282	+		DDA3937_RS14435	0.60	-1.3
3,308,282	+		DDA3937_RS14435	0.60	-1.0
3,308,282	+		DDA3937_RS14435	0.60	-1.8
3,308,282	+		DDA3937_RS14435	0.60	-2.4
3,308,362	-		DDA3937_RS14435	0.65	-2.2
3,308,393	+		DDA3937_RS14435	0.67	-1.6
3,308,394	-		DDA3937_RS14435	0.67	-1.9
3,308,394	-		DDA3937_RS14435	0.67	-0.7
3,308,439	+		DDA3937_RS14435	0.70	-3.0
3,308,439	+		DDA3937_RS14435	0.70	-2.8
3,308,439	+		DDA3937_RS14435	0.70	-0.3
3,308,440	-		DDA3937_RS14435	0.70	-1.9
3,308,440	-		DDA3937_RS14435	0.70	-3.1
3,308,524	-		DDA3937_RS14435	0.75	-1.7
3,308,592	+		DDA3937_RS14435	0.80	-2.7
3,308,604	+		DDA3937_RS14435	0.81	-3.3
3,308,604	+		DDA3937_RS14435	0.81	-1.6
3,308,627	+		DDA3937_RS14435	0.82	-1.3
3,308,628	-		DDA3937_RS14435	0.82	-1.1
3,308,628	-		DDA3937_RS14435	0.82	-1.9
3,308,751	+				-2.2
3,308,752	-				-2.1
3,308,771	+				-2.9
3,308,772	-				-1.4
3,308,772	-				-1.0
3,308,785	-				-1.0
3,308,887	-				-1.2
3,308,927	+				-1.3
3,308,927	+				-1.0
3,308,928	-				-2.8
3,308,928	-				-2.7
3,308,966	+				-2.1
3,308,966	+				-1.8
3,308,966	+				-1.0
3,308,967	-				-0.3
3,308,967	-				-0.2
3,308,988	+		DDA3937_RS14440	0.13	-1.2
3,308,988	+		DDA3937_RS14440	0.13	-2.0
3,308,988	+		DDA3937_RS14440	0.13	-0.7
3,308,988	+		DDA3937_RS14440	0.13	-2.5
3,308,988	+		DDA3937_RS14440	0.13	-1.9
3,308,988	+		DDA3937_RS14440	0.13	-1.4
3,308,989	-		DDA3937_RS14440	0.13	-1.0
3,308,990	+		DDA3937_RS14440	0.13	-2.5
3,308,990	+		DDA3937_RS14440	0.13	-0.8
3,308,990	+		DDA3937_RS14440	0.13	-0.2
3,308,990	+		DDA3937_RS14440	0.13	-1.9
3,308,991	-		DDA3937_RS14440	0.13	-0.2
3,308,991	-		DDA3937_RS14440	0.13	-1.5
3,308,991	-		DDA3937_RS14440	0.13	-0.5
3,309,007	+		DDA3937_RS14440	0.16	-3.0
3,309,173	+		DDA3937_RS14440	0.50	-0.4
3,309,173	+		DDA3937_RS14440	0.50	-3.5
3,309,173	+		DDA3937_RS14440	0.50	-1.2
3,309,173	+		DDA3937_RS14440	0.50	-2.0
3,309,174	-		DDA3937_RS14440	0.50	-1.0
3,309,178	-		DDA3937_RS14440	0.51	-0.6
3,309,266	+		DDA3937_RS14440	0.69	-1.9
3,309,266	+		DDA3937_RS14440	0.69	-1.9
3,309,267	-		DDA3937_RS14440	0.69	+0.8
3,309,278	+		DDA3937_RS14440	0.72	-3.6
3,309,279	-		DDA3937_RS14440	0.72	-0.8
3,309,284	+		DDA3937_RS14440	0.73	-0.9
3,309,284	+		DDA3937_RS14440	0.73	-1.8
3,309,284	+		DDA3937_RS14440	0.73	-0.9
3,309,284	+		DDA3937_RS14440	0.73	-1.9
3,309,284	+		DDA3937_RS14440	0.73	-1.5
3,309,284	+		DDA3937_RS14440	0.73	-1.9
3,309,284	+		DDA3937_RS14440	0.73	-2.1
3,309,284	+		DDA3937_RS14440	0.73	-0.4
3,309,284	+		DDA3937_RS14440	0.73	-2.6
3,309,284	+		DDA3937_RS14440	0.73	-1.2
3,309,284	+		DDA3937_RS14440	0.73	-1.3
3,309,285	-		DDA3937_RS14440	0.73	-2.3
3,309,285	-		DDA3937_RS14440	0.73	-0.9
3,309,285	-		DDA3937_RS14440	0.73	-0.3
3,309,285	-		DDA3937_RS14440	0.73	-0.8
3,309,285	-		DDA3937_RS14440	0.73	-0.3
3,309,285	-		DDA3937_RS14440	0.73	-0.5
3,309,285	-		DDA3937_RS14440	0.73	-1.1
3,309,287	+		DDA3937_RS14440	0.73	-3.6
3,309,287	+		DDA3937_RS14440	0.73	-1.7
3,309,287	+		DDA3937_RS14440	0.73	-3.1
3,309,287	+		DDA3937_RS14440	0.73	+0.8
3,309,288	-				+1.1
3,309,344	-		DDA3937_RS14440	0.85	-0.3
3,309,344	-		DDA3937_RS14440	0.85	-0.0
3,309,387	+				-2.2
3,309,401	+				-0.5
3,309,401	+				-2.5
3,309,402	-				+0.4
3,309,402	-				-0.3
3,309,402	-				-0.2
3,309,402	-				+0.0
3,309,402	-				+0.4
3,309,422	+				-1.4
3,309,422	+				-1.2
3,309,423	-				-1.5
3,309,423	-				-0.2
3,309,427	+				-2.0
3,309,427	+				-2.0
3,309,428	-				-2.0
3,309,480	+				-2.8
3,309,480	+				-2.3
3,309,480	+				+0.8
3,309,481	-				-2.0
3,309,666	+				+1.0
3,309,726	-				+0.5
3,309,787	+		DDA3937_RS14445	0.12	+0.1
3,309,787	+		DDA3937_RS14445	0.12	-0.8
3,309,787	+		DDA3937_RS14445	0.12	-0.5
3,309,788	-		DDA3937_RS14445	0.12	-0.1
3,309,788	-		DDA3937_RS14445	0.12	-2.5
3,309,788	-		DDA3937_RS14445	0.12	+0.3
3,309,788	-		DDA3937_RS14445	0.12	+0.4
3,309,791	+		DDA3937_RS14445	0.13	+0.1
3,309,791	+		DDA3937_RS14445	0.13	-0.4
3,309,831	-		DDA3937_RS14445	0.17	+1.0
3,309,831	-		DDA3937_RS14445	0.17	+2.5
3,309,832	+		DDA3937_RS14445	0.17	-0.8
3,309,833	-		DDA3937_RS14445	0.18	+0.2
3,309,833	-		DDA3937_RS14445	0.18	-0.3
3,309,986	+		DDA3937_RS14445	0.36	-0.4
3,310,028	+		DDA3937_RS14445	0.41	-1.2
3,310,029	-		DDA3937_RS14445	0.41	+0.4
3,310,298	+		DDA3937_RS14445	0.73	+1.2
3,310,298	+		DDA3937_RS14445	0.73	-1.2
3,310,298	+		DDA3937_RS14445	0.73	+0.5
3,310,299	-		DDA3937_RS14445	0.73	-0.8
3,310,382	+		DDA3937_RS14445	0.83	-1.0
3,310,382	+		DDA3937_RS14445	0.83	+1.6
3,310,382	+		DDA3937_RS14445	0.83	-0.6
3,310,382	+		DDA3937_RS14445	0.83	+0.3
3,310,383	-		DDA3937_RS14445	0.83	-0.6