Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14355

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,291,307	+				-1.2
3,291,315	+				-0.1
3,291,315	+				-0.5
3,291,315	+				-2.0
3,291,316	-				-0.9
3,291,316	-				-1.8
3,291,331	+				+0.2
3,291,331	+				-0.8
3,291,331	+				+1.2
3,291,332	-				-0.1
3,291,332	-				-1.0
3,291,332	-				-0.6
3,291,332	-				-1.2
3,291,530	+		DDA3937_RS14350	0.33	-3.0
3,291,530	+		DDA3937_RS14350	0.33	-0.8
3,291,530	+		DDA3937_RS14350	0.33	-0.2
3,291,531	-		DDA3937_RS14350	0.33	-1.0
3,291,531	-		DDA3937_RS14350	0.33	+0.8
3,291,531	-		DDA3937_RS14350	0.33	+0.3
3,291,531	-		DDA3937_RS14350	0.33	+0.8
3,291,531	-		DDA3937_RS14350	0.33	-0.3
3,291,581	+		DDA3937_RS14350	0.41	-0.4
3,291,581	+		DDA3937_RS14350	0.41	-0.6
3,291,581	+		DDA3937_RS14350	0.41	-0.3
3,291,581	+		DDA3937_RS14350	0.41	+1.9
3,291,582	-		DDA3937_RS14350	0.42	-0.2
3,291,582	-		DDA3937_RS14350	0.42	-1.4
3,291,584	+		DDA3937_RS14350	0.42	-2.4
3,291,584	+		DDA3937_RS14350	0.42	-1.9
3,291,584	+		DDA3937_RS14350	0.42	-0.6
3,291,585	-		DDA3937_RS14350	0.42	+2.1
3,291,637	+		DDA3937_RS14350	0.51	-0.6
3,291,638	-		DDA3937_RS14350	0.51	+0.1
3,291,654	+		DDA3937_RS14350	0.54	-0.2
3,291,655	-		DDA3937_RS14350	0.54	-1.3
3,291,756	-		DDA3937_RS14350	0.71	-1.6
3,291,861	-		DDA3937_RS14350	0.88	+0.2
3,291,878	-				-1.0
3,291,878	-				-0.6
3,291,930	-				+0.2
3,292,121	+				-0.2
3,292,122	-				-1.5
3,292,192	+		DDA3937_RS14355	0.10	-2.2
3,292,316	+		DDA3937_RS14355	0.17	+0.6
3,292,316	+		DDA3937_RS14355	0.17	+0.8
3,292,316	+		DDA3937_RS14355	0.17	-0.8
3,292,316	+		DDA3937_RS14355	0.17	-1.1
3,292,316	+		DDA3937_RS14355	0.17	-0.8
3,292,316	+		DDA3937_RS14355	0.17	-0.5
3,292,316	+		DDA3937_RS14355	0.17	-1.2
3,292,316	+		DDA3937_RS14355	0.17	-1.9
3,292,317	-		DDA3937_RS14355	0.17	-0.9
3,292,317	-		DDA3937_RS14355	0.17	+0.1
3,292,317	-		DDA3937_RS14355	0.17	-0.8
3,292,317	-		DDA3937_RS14355	0.17	-1.5
3,292,317	-		DDA3937_RS14355	0.17	+0.1
3,292,317	-		DDA3937_RS14355	0.17	+0.4
3,292,317	-		DDA3937_RS14355	0.17	+0.8
3,292,317	-		DDA3937_RS14355	0.17	-1.2
3,292,317	-				+0.4
3,292,317	-		DDA3937_RS14355	0.17	-1.0
3,292,368	+		DDA3937_RS14355	0.20	-1.2
3,292,368	+		DDA3937_RS14355	0.20	-0.5
3,292,637	+		DDA3937_RS14355	0.35	+1.4
3,292,637	+		DDA3937_RS14355	0.35	-2.4
3,292,637	+		DDA3937_RS14355	0.35	+1.4
3,292,638	-		DDA3937_RS14355	0.35	-0.6
3,292,638	-				+1.4
3,292,660	-		DDA3937_RS14355	0.36	-1.2
3,292,670	+		DDA3937_RS14355	0.36	+0.8
3,292,671	-		DDA3937_RS14355	0.36	-1.4
3,292,695	+		DDA3937_RS14355	0.38	+1.8
3,292,696	-		DDA3937_RS14355	0.38	-0.8
3,292,696	-		DDA3937_RS14355	0.38	-0.6
3,292,696	-		DDA3937_RS14355	0.38	-0.9
3,292,888	+		DDA3937_RS14355	0.48	-3.7
3,292,888	+				+1.4
3,292,888	+		DDA3937_RS14355	0.48	-1.8
3,292,889	-		DDA3937_RS14355	0.48	-0.9
3,292,964	+		DDA3937_RS14355	0.52	-0.8
3,292,964	+		DDA3937_RS14355	0.52	+0.6
3,292,964	+		DDA3937_RS14355	0.52	-3.2
3,292,965	-		DDA3937_RS14355	0.52	-0.0
3,293,021	+		DDA3937_RS14355	0.56	-1.6
3,293,021	+		DDA3937_RS14355	0.56	-1.7
3,293,258	+				-0.5
3,293,258	+		DDA3937_RS14355	0.68	+1.3
3,293,259	-		DDA3937_RS14355	0.68	-1.7
3,293,259	-		DDA3937_RS14355	0.68	-0.5
3,293,259	-		DDA3937_RS14355	0.68	-1.8
3,293,259	-		DDA3937_RS14355	0.68	-1.4
3,293,260	+		DDA3937_RS14355	0.69	-1.5
3,293,260	+		DDA3937_RS14355	0.69	-0.9
3,293,260	+		DDA3937_RS14355	0.69	-1.5
3,293,260	+		DDA3937_RS14355	0.69	-0.3
3,293,260	+		DDA3937_RS14355	0.69	-2.1
3,293,261	-		DDA3937_RS14355	0.69	-1.5
3,293,261	-		DDA3937_RS14355	0.69	-0.5
3,293,261	-		DDA3937_RS14355	0.69	-1.0
3,293,261	-		DDA3937_RS14355	0.69	+0.2
3,293,486	+		DDA3937_RS14355	0.81	-2.9
3,293,487	-		DDA3937_RS14355	0.81	-1.3
3,293,556	-		DDA3937_RS14355	0.85	-1.2
3,293,556	-		DDA3937_RS14355	0.85	-1.3
3,293,606	-		DDA3937_RS14355	0.87	-1.2
3,293,606	-		DDA3937_RS14355	0.87	-0.4
3,293,623	-		DDA3937_RS14355	0.88	+0.9
3,293,623	-		DDA3937_RS14355	0.88	-1.0
3,293,664	+				-1.4
3,293,664	+				-0.9
3,293,665	-				-0.5
3,293,665	-				-1.6
3,293,665	-				-0.4
3,293,665	-				+0.4
3,293,665	-				-0.4
3,293,701	-				-2.0
3,293,799	+				-0.8
3,293,799	+				-2.9
3,293,863	+				-0.1
3,293,968	+				-0.2
3,293,968	+				+0.2
3,294,051	+		DDA3937_RS14360	0.10	+0.5
3,294,052	-		DDA3937_RS14360	0.10	-0.7
3,294,052	-		DDA3937_RS14360	0.10	+0.5
3,294,052	-		DDA3937_RS14360	0.10	+0.1
3,294,211	+		DDA3937_RS14360	0.34	-1.2
3,294,212	-		DDA3937_RS14360	0.35	-0.4
3,294,408	-		DDA3937_RS14360	0.64	-2.4
3,294,516	-				+1.8
3,294,633	-				-0.1
3,294,633	-				+1.0
3,294,633	-				+0.3
3,294,657	+				-0.1
3,294,657	+				-0.2
3,294,660	+				-2.4
3,294,660	+				-0.9
3,294,661	-				+1.0
3,294,664	+				-3.3
3,294,664	+				-0.7
3,294,664	+				-0.9
3,294,664	+				+1.0
3,294,664	+				-1.2
3,294,664	+				-0.4
3,294,664	+				-0.4
3,294,665	-				-0.6
3,294,665	-				-1.6
3,294,667	+				-0.7
3,294,668	-				+0.5
3,294,698	+				-0.3
3,294,698	+				+0.5
3,294,699	-				+1.8
3,294,699	-				-0.9
3,294,699	-				+1.6
3,294,699	-				+0.1
3,294,701	+				-0.3
3,294,720	-				-0.6
3,294,737	+				-0.8
3,294,737	+				-0.5
3,294,778	+				-0.8
3,294,779	-				-1.0
3,294,824	-				-0.9