Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13895

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,159,590	+				-0.3
3,159,591	-				-0.8
3,159,604	+				-0.6
3,159,610	+				-2.3
3,159,610	+				+0.2
3,159,610	+				-1.4
3,159,610	+				-2.6
3,159,611	-				+0.0
3,159,611	-				+0.1
3,159,639	+		DDA3937_RS13890	0.11	+0.4
3,159,655	+		DDA3937_RS13890	0.13	-1.8
3,159,656	-		DDA3937_RS13890	0.14	+0.1
3,159,697	-		DDA3937_RS13890	0.19	+0.2
3,159,697	-		DDA3937_RS13890	0.19	+0.6
3,159,808	+		DDA3937_RS13890	0.34	+0.9
3,159,809	-		DDA3937_RS13890	0.34	+0.3
3,159,809	-		DDA3937_RS13890	0.34	-0.2
3,159,811	+		DDA3937_RS13890	0.34	-0.1
3,159,827	+		DDA3937_RS13890	0.36	+1.5
3,160,103	+		DDA3937_RS13890	0.73	+0.8
3,160,122	+		DDA3937_RS13890	0.76	-0.2
3,160,122	+		DDA3937_RS13890	0.76	-0.7
3,160,122	+		DDA3937_RS13890	0.76	-0.0
3,160,122	+		DDA3937_RS13890	0.76	+0.1
3,160,123	-		DDA3937_RS13890	0.76	-0.9
3,160,123	-		DDA3937_RS13890	0.76	-0.8
3,160,123	-		DDA3937_RS13890	0.76	-2.2
3,160,131	+		DDA3937_RS13890	0.77	-0.5
3,160,131	+		DDA3937_RS13890	0.77	-0.2
3,160,131	+		DDA3937_RS13890	0.77	+0.7
3,160,132	-		DDA3937_RS13890	0.77	-0.1
3,160,132	-		DDA3937_RS13890	0.77	-1.5
3,160,132	-				+1.4
3,160,132	-		DDA3937_RS13890	0.77	-1.2
3,160,171	+		DDA3937_RS13890	0.82	-1.0
3,160,172	-		DDA3937_RS13890	0.83	-0.4
3,160,214	+		DDA3937_RS13890	0.88	-0.6
3,160,254	+				-0.8
3,160,254	+				+0.5
3,160,255	-				-0.8
3,160,255	-				-0.1
3,160,255	-				-1.7
3,160,256	+				-0.7
3,160,293	+				-1.5
3,160,299	+				-1.4
3,160,300	-				-1.2
3,160,325	+				+0.2
3,160,347	+				-1.2
3,160,348	-				+1.0
3,160,348	-				-1.0
3,160,349	+				+0.0
3,160,349	+				-2.0
3,160,350	-				+0.6
3,160,372	-				-0.8
3,160,376	+				-0.3
3,160,376	+				-2.6
3,160,376	+				+0.2
3,160,377	-				-0.4
3,160,377	-				+0.2
3,160,379	+				-0.6
3,160,379	+				-2.0
3,160,379	+				+0.1
3,160,379	+				-0.3
3,160,380	-				-1.2
3,160,380	-				-2.2
3,160,380	-				-0.8
3,160,380	-				+0.8
3,160,380	-				+1.0
3,160,380	-				-0.0
3,160,394	-				-0.0
3,160,409	-				+0.4
3,160,414	+				-2.2
3,160,414	+				-0.2
3,160,516	-				-1.5
3,160,518	-				-0.4
3,160,518	-				-0.1
3,160,518	-				-2.0
3,160,518	-				-2.8
3,160,518	-				-1.5
3,160,544	+				-1.3
3,160,544	+				+2.0
3,160,583	+				+1.9
3,160,593	+				+1.1
3,160,594	-				-1.5
3,160,594	-				+0.2
3,160,594	-				+0.4
3,160,602	+				+0.0
3,160,602	+				+0.1
3,160,603	-				-0.1
3,160,623	+				-0.2
3,160,637	+				+0.4
3,160,637	+				+0.8
3,160,637	+				+0.6
3,160,637	+				-0.7
3,160,637	+				-1.4
3,160,637	+				+0.8
3,160,637	+				+0.1
3,160,637	+				-1.2
3,160,637	+				-1.6
3,160,637	+				-2.2
3,160,638	-				-0.6
3,160,638	-				+0.4
3,160,638	-				-0.8
3,160,638	-				-0.5
3,160,638	-				-0.5
3,160,638	-				-0.6
3,160,638	-				+0.0
3,160,638	-				-0.8
3,160,638	-				-2.4
3,160,638	-				-0.4
3,160,650	+				-0.8
3,160,650	+				+1.2
3,160,650	+				+1.7
3,160,651	-				-1.6
3,160,687	-				+0.3
3,160,806	+		DDA3937_RS13895	0.19	-0.9
3,160,807	-		DDA3937_RS13895	0.19	-0.2
3,160,807	-		DDA3937_RS13895	0.19	-0.5
3,160,807	-		DDA3937_RS13895	0.19	-0.3
3,160,810	-		DDA3937_RS13895	0.19	-0.2
3,160,847	-		DDA3937_RS13895	0.22	-0.8
3,160,919	+		DDA3937_RS13895	0.28	-0.3
3,160,919	+		DDA3937_RS13895	0.28	+2.0
3,160,919	+		DDA3937_RS13895	0.28	+0.6
3,160,919	+		DDA3937_RS13895	0.28	-0.2
3,160,919	+				-1.6
3,160,919	+		DDA3937_RS13895	0.28	+0.8
3,160,920	-		DDA3937_RS13895	0.28	-0.2
3,160,920	-		DDA3937_RS13895	0.28	+0.2
3,160,920	-		DDA3937_RS13895	0.28	-0.3
3,160,920	-		DDA3937_RS13895	0.28	-0.6
3,160,974	-		DDA3937_RS13895	0.32	+0.3
3,160,974	-		DDA3937_RS13895	0.32	+1.4
3,161,059	+		DDA3937_RS13895	0.39	-1.6
3,161,059	+		DDA3937_RS13895	0.39	-0.7
3,161,059	+		DDA3937_RS13895	0.39	-1.2
3,161,059	+		DDA3937_RS13895	0.39	-1.1
3,161,059	+		DDA3937_RS13895	0.39	-0.8
3,161,059	+		DDA3937_RS13895	0.39	-1.5
3,161,060	-		DDA3937_RS13895	0.39	+0.6
3,161,060	-		DDA3937_RS13895	0.39	+0.1
3,161,060	-		DDA3937_RS13895	0.39	-0.2
3,161,060	-		DDA3937_RS13895	0.39	+0.2
3,161,102	+		DDA3937_RS13895	0.43	-0.0
3,161,102	+		DDA3937_RS13895	0.43	+0.8
3,161,102	+		DDA3937_RS13895	0.43	+0.3
3,161,103	-		DDA3937_RS13895	0.43	-0.8
3,161,103	-		DDA3937_RS13895	0.43	+0.0
3,161,103	-		DDA3937_RS13895	0.43	-0.3
3,161,103	-		DDA3937_RS13895	0.43	-1.2
3,161,122	-		DDA3937_RS13895	0.44	-0.2
3,161,169	+		DDA3937_RS13895	0.48	-0.9
3,161,274	+		DDA3937_RS13895	0.57	+0.9
3,161,274	+		DDA3937_RS13895	0.57	-1.0
3,161,275	-		DDA3937_RS13895	0.57	-2.0
3,161,275	-		DDA3937_RS13895	0.57	-0.7
3,161,276	+		DDA3937_RS13895	0.57	-0.2
3,161,276	+		DDA3937_RS13895	0.57	-0.2
3,161,276	+		DDA3937_RS13895	0.57	-0.7
3,161,277	-		DDA3937_RS13895	0.57	+1.6
3,161,277	-		DDA3937_RS13895	0.57	-1.0
3,161,277	-		DDA3937_RS13895	0.57	+0.4
3,161,277	-		DDA3937_RS13895	0.57	+3.0
3,161,277	-		DDA3937_RS13895	0.57	-0.1
3,161,284	-		DDA3937_RS13895	0.57	-0.5
3,161,319	+		DDA3937_RS13895	0.60	-0.2
3,161,320	-		DDA3937_RS13895	0.60	-1.0
3,161,347	+		DDA3937_RS13895	0.62	-0.5
3,161,376	+		DDA3937_RS13895	0.65	-1.6
3,161,376	+		DDA3937_RS13895	0.65	-0.3
3,161,376	+		DDA3937_RS13895	0.65	-0.5
3,161,376	+		DDA3937_RS13895	0.65	-0.6
3,161,377	-				+1.4
3,161,377	-		DDA3937_RS13895	0.65	-2.2
3,161,377	-		DDA3937_RS13895	0.65	-2.2
3,161,400	+		DDA3937_RS13895	0.67	-0.7
3,161,400	+		DDA3937_RS13895	0.67	+0.2
3,161,401	-		DDA3937_RS13895	0.67	-0.2
3,161,428	-				-1.2
3,161,439	+		DDA3937_RS13895	0.70	+0.8
3,161,439	+		DDA3937_RS13895	0.70	-0.8
3,161,439	+		DDA3937_RS13895	0.70	-0.9
3,161,439	+		DDA3937_RS13895	0.70	+0.4
3,161,440	-		DDA3937_RS13895	0.70	-1.1
3,161,440	-		DDA3937_RS13895	0.70	-0.1
3,161,440	-		DDA3937_RS13895	0.70	-0.2
3,161,460	+		DDA3937_RS13895	0.72	-0.4
3,161,475	+		DDA3937_RS13895	0.73	+0.3
3,161,476	-		DDA3937_RS13895	0.73	-0.4
3,161,476	-		DDA3937_RS13895	0.73	-0.2
3,161,500	+		DDA3937_RS13895	0.75	+0.0
3,161,509	-		DDA3937_RS13895	0.76	+1.6
3,161,549	+		DDA3937_RS13895	0.79	-0.2
3,161,549	+		DDA3937_RS13895	0.79	-0.6
3,161,626	+		DDA3937_RS13895	0.85	-0.6
3,161,626	+		DDA3937_RS13895	0.85	+0.8
3,161,627	-				+0.8
3,161,627	-		DDA3937_RS13895	0.85	-0.2
3,161,641	+		DDA3937_RS13895	0.86	+0.2
3,161,642	-		DDA3937_RS13895	0.86	-0.4
3,161,642	-		DDA3937_RS13895	0.86	-1.0
3,161,645	-		DDA3937_RS13895	0.87	-1.4
3,161,645	-		DDA3937_RS13895	0.87	-0.4
3,161,722	+				+2.7
3,161,723	-				-0.5
3,161,749	+				-0.2
3,161,750	-				+0.1
3,161,764	+				+0.1
3,161,768	+				-1.4
3,161,769	-				-0.6
3,161,809	+				-0.8
3,161,853	-				-0.8
3,161,859	+				-0.1
3,161,871	-				-0.3
3,161,871	-				+0.8
3,161,873	-				-1.2
3,161,875	+				-0.6
3,161,880	+				-1.2
3,161,933	+				-0.8
3,161,950	+				-1.8
3,161,952	+				+0.4
3,161,952	+				+0.2
3,161,953	-				-0.8
3,161,953	-				-0.6
3,161,953	-				-1.0
3,161,993	+		DDA3937_RS22350	0.12	-2.4
3,161,993	+				+0.4
3,162,006	+		DDA3937_RS22350	0.13	-1.6
3,162,007	-		DDA3937_RS22350	0.13	-1.4
3,162,007	-		DDA3937_RS22350	0.13	-0.3
3,162,007	-		DDA3937_RS22350	0.13	-0.9
3,162,007	-		DDA3937_RS22350	0.13	-0.1
3,162,007	-		DDA3937_RS22350	0.13	+2.1
3,162,184	+		DDA3937_RS22350	0.32	-0.4
3,162,189	+		DDA3937_RS22350	0.32	-0.1
3,162,252	+		DDA3937_RS22350	0.39	+0.8
3,162,252	+		DDA3937_RS22350	0.39	-0.2
3,162,264	+		DDA3937_RS22350	0.40	-1.0
3,162,265	-		DDA3937_RS22350	0.40	-1.3
3,162,280	+		DDA3937_RS22350	0.42	-1.0
3,162,281	-		DDA3937_RS22350	0.42	-0.8
3,162,328	+		DDA3937_RS22350	0.47	+0.4
3,162,329	-		DDA3937_RS22350	0.47	+0.4
3,162,329	-		DDA3937_RS22350	0.47	-0.1
3,162,397	-		DDA3937_RS22350	0.54	+0.4
3,162,546	+		DDA3937_RS22350	0.70	+0.5
3,162,561	-		DDA3937_RS22350	0.71	-0.8
3,162,726	+		DDA3937_RS22350	0.88	-2.7
3,162,726	+		DDA3937_RS22350	0.88	-0.2
3,162,739	-		DDA3937_RS22350	0.90	-1.0
3,162,784	+				-0.2